Wall clock time and date at job start Tue Mar 31 2020 11:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46952 * 2 1 4 4 C 1.53005 * 109.47127 * 240.00318 * 2 1 3 5 5 C 1.50698 * 109.47438 * 119.99731 * 2 1 3 6 6 N 1.30860 * 125.89094 * 255.28008 * 5 2 1 7 7 C 1.33685 * 109.77540 * 180.14660 * 6 5 2 8 8 S 1.76198 * 125.62134 * 179.87727 * 7 6 5 9 9 C 1.81402 * 103.00043 * 179.71663 * 8 7 6 10 10 C 1.50700 * 109.47015 * 180.02562 * 9 8 7 11 11 C 1.38629 * 119.75032 * 90.00088 * 10 9 8 12 12 C 1.37624 * 120.24653 * 180.23096 * 11 10 9 13 13 C 1.40716 * 119.74224 * 359.52057 * 12 11 10 14 14 C 1.41396 * 120.23809 * 180.23246 * 13 12 11 15 15 H 1.08004 * 119.99614 * 155.44655 * 14 13 12 16 16 C 1.39940 * 120.00247 * 335.43838 * 14 13 12 17 17 N 1.30823 * 120.00151 * 342.11422 * 16 14 13 18 18 Si 1.86806 * 119.99767 * 162.10433 * 16 14 13 19 19 H 1.48496 * 109.46866 * 94.67188 * 18 16 14 20 20 H 1.48498 * 109.46883 * 214.66477 * 18 16 14 21 21 H 1.48493 * 109.47470 * 334.66957 * 18 16 14 22 22 C 1.40712 * 119.51327 * 0.46996 * 13 12 11 23 23 C 1.37612 * 119.74657 * 359.76314 * 22 13 12 24 24 N 1.31257 * 108.76124 * 359.61118 * 7 6 5 25 25 N 1.34349 * 125.88194 * 74.99941 * 5 2 1 26 26 H 0.96996 * 126.76401 * 359.97438 * 25 5 2 27 27 H 1.08994 * 109.47316 * 299.99554 * 1 2 3 28 28 H 1.09004 * 109.47574 * 60.00076 * 1 2 3 29 29 H 1.09009 * 109.46935 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47034 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46919 * 300.00325 * 3 2 1 32 32 H 1.08995 * 109.47255 * 59.99974 * 3 2 1 33 33 H 1.09006 * 109.46492 * 299.99473 * 4 2 1 34 34 H 1.08998 * 109.47501 * 59.99757 * 4 2 1 35 35 H 1.08996 * 109.46645 * 179.97438 * 4 2 1 36 36 H 1.09002 * 109.47253 * 59.99561 * 9 8 7 37 37 H 1.09002 * 109.46892 * 300.00095 * 9 8 7 38 38 H 1.07999 * 119.87639 * 359.94983 * 11 10 9 39 39 H 1.07997 * 120.12681 * 179.71511 * 12 11 10 40 40 H 0.97002 * 120.00064 * 180.02562 * 17 16 14 41 41 H 1.08001 * 120.12762 * 179.73183 * 22 13 12 42 42 H 1.08003 * 119.88187 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2305 6 7 2.5421 -0.1390 2.2917 7 6 2.8843 -1.0711 3.1868 8 16 3.6109 -0.7633 4.7623 9 6 3.8056 -2.4288 5.4543 10 6 4.4250 -2.3340 6.8248 11 6 3.6112 -2.2152 7.9408 12 6 4.1661 -2.1231 9.1969 13 6 5.5648 -2.1601 9.3465 14 6 6.1459 -2.0713 10.6325 15 1 7.1291 -2.4814 10.8102 16 6 5.4473 -1.4518 11.6748 17 7 4.4411 -0.6594 11.4077 18 14 5.9512 -1.7565 13.4476 19 1 6.8739 -0.6811 13.8917 20 1 4.7435 -1.7606 14.3117 21 1 6.6366 -3.0699 13.5487 22 6 6.3809 -2.2811 8.2067 23 6 5.8044 -2.3668 6.9601 24 7 2.5847 -2.2531 2.7011 25 7 2.0293 -2.0390 1.4291 26 1 1.7066 -2.7171 0.8151 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1393 35 1 3.1300 -0.7208 -1.2495 36 1 4.4505 -3.0195 4.8037 37 1 2.8291 -2.9074 5.5295 38 1 2.5378 -2.1903 7.8237 39 1 3.5304 -2.0260 10.0645 40 1 3.9571 -0.2297 12.1302 41 1 7.4557 -2.3061 8.3097 42 1 6.4288 -2.4593 6.0837 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000544074676.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:11 Heat of formation + Delta-G solvation = 62.385780 kcal Electronic energy + Delta-G solvation = -22482.276145 eV Core-core repulsion = 19167.274203 eV Total energy + Delta-G solvation = -3315.001942 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.25411 -39.51361 -37.87317 -35.88316 -33.71344 -33.09512 -31.76888 -31.22063 -29.32072 -28.25824 -28.17792 -25.83526 -24.57406 -23.63472 -22.92844 -21.84118 -20.65534 -19.25136 -18.90965 -17.60656 -17.17688 -16.84354 -16.34416 -16.04759 -15.72014 -15.68586 -15.30676 -14.94628 -14.92118 -14.32382 -13.91206 -13.81140 -13.60807 -13.38356 -13.22018 -13.03316 -12.94241 -12.73873 -12.64962 -12.47160 -12.38941 -12.20206 -12.10449 -11.90519 -11.69920 -11.66257 -11.53671 -11.31035 -11.13683 -10.97020 -10.89155 -9.40880 -9.23810 -8.74640 -8.67420 -6.35877 0.00395 0.39381 0.87195 1.13059 1.28710 1.39845 1.53373 1.60880 1.62327 1.86875 2.20353 2.73215 3.07250 3.54784 3.72523 3.88158 3.98294 4.05504 4.08165 4.11815 4.49416 4.56584 4.64964 4.66532 4.70009 4.74748 4.81419 4.92062 4.95835 4.97145 5.03212 5.06933 5.13011 5.21724 5.31506 5.31856 5.40620 5.42782 5.66853 5.89664 6.06508 6.07119 6.15072 6.33352 6.65644 6.82931 6.89831 6.98488 8.28992 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.037979 B = 0.002193 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.068635 B =12765.905612 C =12984.426254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.012 3.988 3 C -0.130 4.130 4 C -0.144 4.144 5 C 0.307 3.693 6 N -0.547 5.547 7 C 0.200 3.800 8 S -0.025 6.025 9 C -0.013 4.013 10 C -0.208 4.208 11 C -0.080 4.080 12 C -0.191 4.191 13 C 0.087 3.913 14 C -0.490 4.490 15 H 0.080 0.920 16 C 0.034 3.966 17 N -0.818 5.818 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.257 1.257 22 C -0.242 4.242 23 C -0.065 4.065 24 N -0.341 5.341 25 N -0.468 5.468 26 H 0.453 0.547 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.101 0.899 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.290 0.710 41 H 0.103 0.897 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.193 0.062 -22.409 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.009 3.991 3 C -0.188 4.188 4 C -0.202 4.202 5 C 0.027 3.973 6 N -0.277 5.277 7 C -0.190 4.190 8 S 0.207 5.793 9 C -0.161 4.161 10 C -0.212 4.212 11 C -0.100 4.100 12 C -0.211 4.211 13 C 0.084 3.916 14 C -0.519 4.519 15 H 0.098 0.902 16 C -0.182 4.182 17 N -0.443 5.443 18 Si 0.804 3.196 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.181 1.181 22 C -0.262 4.262 23 C -0.085 4.085 24 N -0.175 5.175 25 N -0.188 5.188 26 H 0.302 0.698 27 H 0.066 0.934 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.072 0.928 36 H 0.110 0.890 37 H 0.104 0.896 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.942 0.941 -21.455 22.897 hybrid contribution -0.318 -1.510 0.110 1.547 sum -8.260 -0.569 -21.345 22.894 Atomic orbital electron populations 1.21946 0.90652 1.03243 1.03882 1.19569 0.97240 0.95714 0.86618 1.21739 1.01001 0.92860 1.03153 1.22001 1.01404 1.00901 0.95848 1.25127 0.93440 0.82255 0.96450 1.70542 1.22322 1.33133 1.01707 1.26345 1.01513 0.89277 1.01842 1.86402 1.74206 1.15379 1.03347 1.22094 1.03911 0.93754 0.96310 1.18604 0.93404 1.17672 0.91533 1.20757 0.98170 0.98568 0.92548 1.21260 0.95289 1.08326 0.96198 1.18037 0.92435 0.87730 0.93382 1.19929 1.03726 1.33778 0.94498 0.90167 1.26832 0.93655 0.91786 1.05932 1.69880 1.17675 1.19923 1.36793 0.85166 0.79004 0.79960 0.75450 1.18677 1.19014 1.18099 1.21168 0.98292 1.14132 0.92590 1.20698 0.93806 0.97516 0.96520 1.78307 1.22792 1.20967 0.95435 1.47703 1.48749 1.08113 1.14231 0.69780 0.93398 0.87970 0.91586 0.93321 0.88745 0.93076 0.91136 0.87976 0.92797 0.89049 0.89553 0.87591 0.87818 0.89883 0.87909 0.86409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.46 71.98 0.61 -0.78 16 2 C 0.01 0.16 0.99 -52.93 -0.05 0.11 16 3 C -0.13 -1.91 8.03 71.98 0.58 -1.34 16 4 C -0.14 -1.11 8.35 71.98 0.60 -0.51 16 5 C 0.31 7.13 6.48 138.24 0.90 8.03 16 6 N -0.55 -17.60 10.53 -188.59 -1.99 -19.58 16 7 C 0.20 7.02 8.28 180.47 1.49 8.51 16 8 S -0.02 -0.93 22.15 -56.49 -1.25 -2.18 16 9 C -0.01 -0.48 5.67 71.24 0.40 -0.08 16 10 C -0.21 -8.98 5.16 -19.67 -0.10 -9.08 16 11 C -0.08 -3.77 9.67 22.22 0.21 -3.56 16 12 C -0.19 -10.12 8.70 22.73 0.20 -9.92 16 13 C 0.09 4.73 5.57 -21.29 -0.12 4.61 16 14 C -0.49 -26.27 9.05 23.46 0.21 -26.06 16 15 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 16 C 0.03 1.70 5.14 85.26 0.44 2.14 16 17 N -0.82 -42.74 10.97 21.82 0.24 -42.50 16 18 Si 0.98 37.78 29.60 68.60 2.03 39.81 16 19 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 20 H -0.27 -9.72 7.11 99.48 0.71 -9.02 16 21 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 22 C -0.24 -11.91 9.80 22.73 0.22 -11.69 16 23 C -0.07 -2.89 9.67 22.22 0.21 -2.67 16 24 N -0.34 -10.81 12.36 -58.58 -0.72 -11.53 16 25 N -0.47 -10.50 7.27 -50.74 -0.37 -10.87 16 26 H 0.45 6.30 8.53 -213.11 -1.82 4.48 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.97 8.08 -2.39 -0.02 0.95 16 33 H 0.07 0.35 7.69 -2.38 -0.02 0.33 16 34 H 0.10 0.32 8.14 -2.39 -0.02 0.31 16 35 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.09 3.14 8.08 -2.39 -0.02 3.12 16 37 H 0.09 3.06 8.08 -2.39 -0.02 3.04 16 38 H 0.11 4.54 8.06 -2.91 -0.02 4.51 16 39 H 0.10 5.73 6.17 -2.91 -0.02 5.71 16 40 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 41 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 42 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -66.62 367.19 2.96 -63.66 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: -0.79 Total: 25.48 kcal Atomic # 6 Polarization: -48.10 SS G_CDS: 5.81 Total: -42.29 kcal Atomic # 7 Polarization: -81.65 SS G_CDS: -2.84 Total: -84.49 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Atomic # 16 Polarization: -0.93 SS G_CDS: -1.25 Total: -2.18 kcal Total: -66.62 2.96 -63.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000544074676.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.048 kcal (2) G-P(sol) polarization free energy of solvation -66.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds