Wall clock time and date at job start Tue Mar 31 2020 13:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 H 1.08998 * 109.47672 * 54.99787 * 3 2 1 5 5 C 1.50698 * 109.47131 * 175.00014 * 3 2 1 6 6 H 1.08002 * 120.00163 * 119.99417 * 5 3 2 7 7 C 1.37880 * 120.00069 * 299.99871 * 5 3 2 8 8 N 1.31517 * 119.99807 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00051 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47326 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46911 * 120.00055 * 9 7 5 12 12 H 1.48498 * 109.46818 * 239.99677 * 9 7 5 13 13 N 1.46503 * 109.47070 * 294.99587 * 3 2 1 14 14 C 1.34781 * 119.99887 * 85.00133 * 13 3 2 15 15 O 1.21657 * 119.99618 * 0.02562 * 14 13 3 16 16 C 1.46977 * 119.99946 * 180.02562 * 14 13 3 17 17 O 1.34926 * 125.12781 * 359.97375 * 16 14 13 18 18 C 1.34839 * 110.85355 * 180.02562 * 17 16 14 19 19 C 1.39016 * 133.08305 * 180.02562 * 18 17 16 20 20 C 1.37709 * 120.07014 * 179.97438 * 19 18 17 21 21 C 1.39293 * 120.69788 * 0.02562 * 20 19 18 22 22 O 1.35971 * 119.90936 * 180.02562 * 21 20 19 23 23 C 1.42908 * 117.00083 * 359.97438 * 22 21 20 24 24 C 1.38042 * 120.18205 * 359.93592 * 21 20 19 25 25 C 1.39725 * 119.55118 * 0.08461 * 24 21 20 26 26 C 1.35815 * 125.12965 * 180.02562 * 16 14 13 27 27 C 1.50695 * 126.95537 * 0.23795 * 26 16 14 28 28 H 1.09000 * 109.47024 * 300.00434 * 1 2 3 29 29 H 1.09001 * 109.46752 * 60.00080 * 1 2 3 30 30 H 1.09002 * 109.47229 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47024 * 239.99566 * 2 1 3 32 32 H 1.09000 * 109.46966 * 119.99410 * 2 1 3 33 33 H 0.96999 * 119.99709 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00503 * 265.00651 * 13 3 2 35 35 H 1.07999 * 119.96498 * 359.97204 * 19 18 17 36 36 H 1.08001 * 119.65399 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.47058 * 300.00839 * 23 22 21 38 38 H 1.09002 * 109.46889 * 59.99922 * 23 22 21 39 39 H 1.08993 * 109.47090 * 180.02562 * 23 22 21 40 40 H 1.07995 * 120.22268 * 180.02562 * 24 21 20 41 41 H 1.08996 * 109.47494 * 269.68300 * 27 26 16 42 42 H 1.08996 * 109.47514 * 29.68703 * 27 26 16 43 43 H 1.09001 * 109.46863 * 149.68453 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8784 1.2280 8 7 3.4061 0.3375 2.1734 9 14 6.0049 0.8813 1.3818 10 1 6.5988 1.5463 0.1943 11 1 6.3989 1.6168 2.6102 12 1 6.4970 -0.5174 1.4631 13 7 1.6525 2.0974 -1.2519 14 6 0.4351 2.6644 -1.3671 15 8 -0.3416 2.6326 -0.4313 16 6 0.0462 3.3210 -2.6232 17 8 0.8232 3.4168 -3.7221 18 6 0.1815 4.0767 -4.7075 19 6 0.5392 4.4289 -6.0039 20 6 -0.3466 5.1194 -6.8007 21 6 -1.6061 5.4734 -6.3226 22 8 -2.4684 6.1547 -7.1233 23 6 -2.0159 6.4739 -8.4407 24 6 -1.9820 5.1329 -5.0387 25 6 -1.0900 4.4327 -4.2223 26 6 -1.1492 3.9235 -2.8525 27 6 -2.3008 4.0479 -1.8885 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.8292 -0.0602 2.9503 34 1 2.2719 2.1231 -1.9979 35 1 1.5129 4.1608 -6.3865 36 1 -0.0619 5.3893 -7.8069 37 1 -1.1222 7.0947 -8.3775 38 1 -1.7822 5.5543 -8.9773 39 1 -2.7979 7.0163 -8.9720 40 1 -2.9585 5.4067 -4.6675 41 1 -2.9643 3.1908 -2.0025 42 1 -1.9188 4.0785 -0.8681 43 1 -2.8522 4.9646 -2.0976 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000545153579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:02 Heat of formation + Delta-G solvation = -70.346632 kcal Electronic energy + Delta-G solvation = -26177.859786 eV Core-core repulsion = 22382.056513 eV Total energy + Delta-G solvation = -3795.803274 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.57839 -40.84556 -40.42321 -37.51477 -37.13240 -34.92953 -34.33431 -32.91771 -31.62656 -30.56377 -29.27950 -28.38929 -27.85898 -25.59525 -24.60321 -23.46463 -22.30398 -21.32290 -21.18359 -19.78123 -18.92474 -18.18141 -17.88236 -17.58926 -17.24748 -16.74945 -16.58205 -16.23768 -16.04100 -15.59304 -15.16408 -14.88087 -14.59093 -14.33225 -14.10987 -14.05796 -13.90124 -13.67325 -13.52679 -13.29861 -13.26166 -13.19285 -12.89309 -12.72403 -12.67137 -12.17466 -12.09731 -11.82177 -11.78058 -11.60669 -11.09296 -11.02742 -10.97288 -10.56307 -9.83335 -9.35812 -9.01403 -8.18194 -6.35216 -0.54723 0.27804 0.75241 1.43019 1.43625 1.45993 1.56767 2.14434 2.17226 2.36690 2.55233 2.55446 3.11415 3.44157 3.50708 3.73040 3.89587 4.03225 4.09745 4.28145 4.44346 4.47698 4.48488 4.55733 4.61421 4.69234 4.72611 4.74758 4.82477 4.93535 5.03362 5.05279 5.12704 5.13771 5.22659 5.30883 5.35014 5.40877 5.47994 5.57076 5.72513 5.80885 5.95632 6.12547 6.38406 6.69010 6.79578 7.20059 7.38621 8.87471 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.002922 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.284317 B = 9579.539538 C =10451.443097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.010 0.990 5 C -0.551 4.551 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.911 5.911 9 Si 0.970 3.030 10 H -0.264 1.264 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.692 5.692 14 C 0.583 3.417 15 O -0.544 6.544 16 C -0.040 4.040 17 O -0.192 6.192 18 C 0.014 3.986 19 C -0.071 4.071 20 C -0.152 4.152 21 C 0.108 3.892 22 O -0.330 6.330 23 C 0.014 3.986 24 C -0.112 4.112 25 C -0.114 4.114 26 C -0.094 4.094 27 C -0.088 4.088 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.078 0.922 33 H 0.266 0.734 34 H 0.403 0.597 35 H 0.163 0.837 36 H 0.180 0.820 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.147 0.853 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.971 10.499 -21.968 25.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.028 0.972 5 C -0.589 4.589 6 H 0.086 0.914 7 C -0.182 4.182 8 N -0.549 5.549 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.208 1.208 12 H -0.203 1.203 13 N -0.339 5.339 14 C 0.369 3.631 15 O -0.425 6.425 16 C -0.090 4.090 17 O -0.095 6.095 18 C -0.034 4.034 19 C -0.089 4.089 20 C -0.170 4.170 21 C 0.062 3.938 22 O -0.244 6.244 23 C -0.080 4.080 24 C -0.131 4.131 25 C -0.116 4.116 26 C -0.097 4.097 27 C -0.144 4.144 28 H 0.052 0.948 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.238 0.762 35 H 0.181 0.819 36 H 0.197 0.803 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.137 0.863 40 H 0.165 0.835 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.391 10.323 -21.094 25.293 hybrid contribution 1.318 -0.213 0.208 1.351 sum -8.073 10.110 -20.886 24.568 Atomic orbital electron populations 1.21694 0.96734 0.99474 1.00346 1.21803 0.93992 0.98758 1.01505 1.18545 0.94005 0.89418 0.80530 0.97236 1.21549 0.91234 1.39266 1.06828 0.91427 1.25724 1.03296 0.94231 0.94903 1.70033 1.36967 1.38146 1.09785 0.85326 0.79115 0.77915 0.78163 1.18789 1.20802 1.20258 1.46303 1.14649 1.54695 1.18221 1.16921 0.82902 0.78800 0.84517 1.90794 1.52298 1.60968 1.38477 1.21853 0.92332 1.07018 0.87783 1.84011 1.41429 1.64128 1.19924 1.20171 0.92003 0.99427 0.91752 1.20124 1.02136 0.98982 0.87650 1.21462 0.92280 1.01134 1.02117 1.18740 0.89912 0.94441 0.90665 1.86088 1.41088 1.70398 1.26813 1.23435 1.03009 1.01804 0.79760 1.19750 1.00488 1.01237 0.91604 1.19534 0.95386 1.03052 0.93580 1.21618 0.95726 0.98059 0.94318 1.20425 0.93764 1.03349 0.96877 0.94763 0.94223 0.93322 0.94264 0.90413 0.92425 0.76216 0.81908 0.80304 0.91211 0.91178 0.86341 0.83546 0.89929 0.90936 0.89043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 8.51 71.98 0.61 -5.02 16 2 C -0.12 -6.04 5.45 30.59 0.17 -5.88 16 3 C 0.28 14.43 2.24 44.24 0.10 14.53 16 4 H 0.01 0.59 7.58 -2.39 -0.02 0.57 16 5 C -0.55 -29.57 8.73 25.60 0.22 -29.35 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.45 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -51.69 11.29 21.45 0.24 -51.45 16 9 Si 0.97 42.31 29.54 68.60 2.03 44.34 16 10 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 13 N -0.69 -30.77 5.02 -449.79 -2.26 -33.03 16 14 C 0.58 25.05 6.36 86.53 0.55 25.60 16 15 O -0.54 -25.62 11.75 -4.21 -0.05 -25.67 16 16 C -0.04 -1.48 7.07 24.00 0.17 -1.31 16 17 O -0.19 -6.50 10.28 -14.03 -0.14 -6.64 16 18 C 0.01 0.39 7.40 23.05 0.17 0.57 16 19 C -0.07 -1.40 10.05 22.33 0.22 -1.17 16 20 C -0.15 -2.35 9.01 22.40 0.20 -2.15 16 21 C 0.11 2.06 6.68 22.48 0.15 2.21 16 22 O -0.33 -5.39 10.49 -93.23 -0.98 -6.37 16 23 C 0.01 0.10 9.81 113.37 1.11 1.21 16 24 C -0.11 -2.59 10.04 22.58 0.23 -2.36 16 25 C -0.11 -3.25 6.36 -20.24 -0.13 -3.38 16 26 C -0.09 -3.05 6.39 -18.34 -0.12 -3.17 16 27 C -0.09 -2.50 9.81 71.23 0.70 -1.80 16 28 H 0.03 1.63 7.84 -2.39 -0.02 1.61 16 29 H 0.04 1.74 5.64 -2.39 -0.01 1.73 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.08 4.26 5.95 -2.39 -0.01 4.25 16 33 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 34 H 0.40 16.32 8.25 -92.71 -0.77 15.55 16 35 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.18 1.31 6.26 -2.91 -0.02 1.29 16 37 H 0.07 0.31 7.65 -2.39 -0.02 0.30 16 38 H 0.07 0.31 7.65 -2.39 -0.02 0.29 16 39 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.15 2.96 8.06 -2.91 -0.02 2.93 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.07 2.41 6.37 -2.39 -0.02 2.39 16 43 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -67.21 354.97 3.93 -63.28 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.28 Total: 25.55 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 4.81 Total: -10.01 kcal Atomic # 7 Polarization: -82.46 SS G_CDS: -2.01 Total: -84.47 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.17 Total: -38.68 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -67.21 3.93 -63.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000545153579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.069 kcal (2) G-P(sol) polarization free energy of solvation -67.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds