Wall clock time and date at job start Tue Mar 31 2020 12:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47440 * 2 1 4 4 H 1.09003 * 109.47336 * 305.64450 * 3 2 1 5 5 C 1.50700 * 109.47402 * 185.64180 * 3 2 1 6 6 H 1.08005 * 120.00175 * 239.72370 * 5 3 2 7 7 C 1.37878 * 120.00114 * 60.00379 * 5 3 2 8 8 N 1.31520 * 119.99631 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00224 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47256 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47371 * 119.99201 * 9 7 5 12 12 H 1.48492 * 109.47378 * 239.99533 * 9 7 5 13 13 N 1.46901 * 109.47513 * 65.63902 * 3 2 1 14 14 C 1.46896 * 111.00626 * 205.22674 * 13 3 2 15 15 C 1.52998 * 109.47019 * 185.19176 * 14 13 3 16 16 C 1.50704 * 109.46915 * 179.97438 * 15 14 13 17 17 C 1.38280 * 119.97493 * 269.72928 * 16 15 14 18 18 C 1.38246 * 120.11107 * 179.72322 * 17 16 15 19 19 C 1.38168 * 120.05725 * 0.55027 * 18 17 16 20 20 C 1.38712 * 119.94087 * 359.72396 * 19 18 17 21 21 O 1.35900 * 120.05639 * 179.97438 * 20 19 18 22 22 C 1.42902 * 116.99559 * 0.02562 * 21 20 19 23 23 F 1.39895 * 109.47281 * 60.00440 * 22 21 20 24 24 F 1.39902 * 109.46802 * 180.02562 * 22 21 20 25 25 F 1.39903 * 109.47418 * 299.99811 * 22 21 20 26 26 C 1.38134 * 119.96855 * 89.99917 * 16 15 14 27 27 H 1.09000 * 109.46970 * 294.41704 * 1 2 3 28 28 H 1.09003 * 109.46617 * 54.41759 * 1 2 3 29 29 H 1.08998 * 109.46988 * 174.41294 * 1 2 3 30 30 H 1.09003 * 109.47392 * 239.99613 * 2 1 3 31 31 H 1.08996 * 109.47201 * 119.99905 * 2 1 3 32 32 H 0.97000 * 119.99428 * 180.02562 * 8 7 5 33 33 H 1.00906 * 110.99334 * 329.18568 * 13 3 2 34 34 H 1.09000 * 109.46694 * 305.19195 * 14 13 3 35 35 H 1.09000 * 109.46985 * 65.19184 * 14 13 3 36 36 H 1.09000 * 109.47403 * 299.99585 * 15 14 13 37 37 H 1.09000 * 109.47235 * 60.00161 * 15 14 13 38 38 H 1.08005 * 119.94684 * 359.97438 * 17 16 15 39 39 H 1.08002 * 119.97330 * 180.25104 * 18 17 16 40 40 H 1.07998 * 120.02785 * 179.70396 * 19 18 17 41 41 H 1.08001 * 120.02516 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5966 1.9847 -0.8351 5 6 3.5406 1.4447 -0.1397 6 1 4.1539 1.8904 0.6296 7 6 4.1302 0.8830 -1.2522 8 7 3.3832 0.3448 -2.1913 9 14 5.9902 0.8852 -1.4251 10 1 6.5966 1.5459 -0.2414 11 1 6.4805 -0.5135 -1.5169 12 1 6.3723 1.6254 -2.6544 13 7 1.6647 2.0946 1.2617 14 6 1.5790 3.5517 1.0960 15 6 1.3144 4.2046 2.4542 16 6 1.2271 5.6995 2.2844 17 6 2.3659 6.4755 2.3986 18 6 2.2900 7.8465 2.2377 19 6 1.0735 8.4459 1.9734 20 6 -0.0713 7.6703 1.8640 21 8 -1.2691 8.2575 1.6047 22 6 -1.2761 9.6787 1.4558 23 9 -0.4422 10.0404 0.3924 24 9 -2.5800 10.1139 1.1953 25 9 -0.8133 10.2734 2.6345 26 6 0.0085 6.2939 2.0202 27 1 -0.3633 0.4248 0.9358 28 1 -0.3633 0.5980 -0.8358 29 1 -0.3633 -1.0228 -0.1001 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7981 -0.0507 -2.9739 33 1 0.7987 1.7196 1.6188 34 1 2.5180 3.9269 0.6892 35 1 0.7649 3.7924 0.4124 36 1 0.3753 3.8294 2.8610 37 1 2.1285 3.9639 3.1378 38 1 3.3170 6.0094 2.6099 39 1 3.1815 8.4500 2.3233 40 1 1.0139 9.5175 1.8525 41 1 -0.8813 5.6878 1.9350 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563365312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:20 Heat of formation + Delta-G solvation = -182.199194 kcal Electronic energy + Delta-G solvation = -26148.605556 eV Core-core repulsion = 21806.095251 eV Total energy + Delta-G solvation = -4342.510305 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.71520 -48.44061 -48.30431 -40.44572 -38.20118 -36.44187 -33.76611 -31.96929 -30.94774 -30.51286 -27.89795 -26.31953 -25.93823 -23.28504 -22.91865 -22.28078 -21.17561 -19.66274 -19.42485 -19.39380 -19.00576 -16.84093 -16.45816 -16.23784 -15.53471 -15.48356 -15.09381 -14.88457 -14.80302 -14.73408 -14.62451 -14.51351 -14.40609 -14.28484 -13.84099 -13.55103 -13.28102 -13.01063 -12.80248 -12.37920 -12.06439 -11.88206 -11.59706 -11.43908 -11.23943 -11.03193 -10.82676 -10.60078 -10.54469 -9.96509 -9.72832 -9.63535 -9.06434 -8.96212 -8.63701 -8.34810 -7.24818 -5.96832 -4.00904 1.07535 1.15346 1.24316 2.57085 3.31113 3.39209 3.43769 3.45534 3.51105 3.75562 4.44200 4.47663 4.55381 4.87988 4.92636 5.15553 5.26435 5.31467 5.47116 5.57574 5.74179 5.86040 5.88235 6.05071 6.15194 6.15952 6.18205 6.29162 6.32418 6.40997 6.59728 6.67704 6.82134 6.84129 7.07957 7.18766 7.49010 7.77923 7.91546 8.28809 8.39316 8.75068 9.07105 9.64101 11.08652 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.002670 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.147280 B =10486.206322 C =11066.788852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.219 3.781 4 H 0.001 0.999 5 C -0.492 4.492 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.688 5.688 14 C 0.074 3.926 15 C -0.081 4.081 16 C -0.031 4.031 17 C -0.129 4.129 18 C -0.077 4.077 19 C -0.201 4.201 20 C 0.100 3.900 21 O -0.311 6.311 22 C 0.604 3.396 23 F -0.165 7.165 24 F -0.134 7.134 25 F -0.167 7.167 26 C -0.122 4.122 27 H 0.035 0.965 28 H 0.042 0.958 29 H 0.037 0.963 30 H 0.099 0.901 31 H 0.041 0.959 32 H 0.259 0.741 33 H 0.316 0.684 34 H 0.076 0.924 35 H 0.016 0.984 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.481 17.167 9.107 21.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.019 0.981 5 C -0.531 4.531 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.213 1.213 13 N -0.319 5.319 14 C -0.056 4.056 15 C -0.119 4.119 16 C -0.032 4.032 17 C -0.147 4.147 18 C -0.096 4.096 19 C -0.219 4.219 20 C 0.059 3.941 21 O -0.231 6.231 22 C 0.513 3.487 23 F -0.147 7.147 24 F -0.115 7.115 25 F -0.149 7.149 26 C -0.141 4.141 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.034 0.966 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.985 17.039 9.134 20.917 hybrid contribution 0.092 0.508 -0.847 0.992 sum -7.894 17.548 8.287 20.950 Atomic orbital electron populations 1.21881 0.99607 0.99723 0.99529 1.21763 0.91228 1.00327 1.03089 1.19154 0.95515 0.89978 0.84216 0.98119 1.21245 0.91273 1.36303 1.04275 0.92010 1.24970 0.98107 0.95703 0.95859 1.69887 1.34576 1.39584 1.09578 0.86499 0.85808 0.77601 0.77842 1.19777 1.21142 1.21265 1.60680 1.36006 1.01986 1.33184 1.21760 1.00623 0.90090 0.93086 1.20725 1.03120 0.88208 0.99829 1.19881 0.91618 0.96657 0.95056 1.21236 0.98889 0.93395 1.01143 1.20942 0.96669 0.94943 0.96997 1.21430 0.92963 0.99948 1.07596 1.18664 0.81756 0.92753 1.00953 1.86414 1.32865 1.17092 1.86720 1.19353 0.74663 0.79893 0.74806 1.93306 1.71999 1.91846 1.57561 1.93301 1.36178 1.88206 1.93861 1.93294 1.88625 1.84440 1.48530 1.20329 0.99257 0.90226 1.04261 0.94600 0.93923 0.94380 0.88256 0.94016 0.93154 0.86689 0.90542 0.96624 0.91215 0.89618 0.84800 0.85071 0.85305 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.85 9.65 37.16 0.36 -2.49 16 2 C -0.13 -2.91 5.36 -26.73 -0.14 -3.05 16 3 C 0.22 5.33 2.02 -68.87 -0.14 5.19 16 4 H 0.00 0.03 7.85 -51.93 -0.41 -0.38 16 5 C -0.49 -13.36 8.55 -34.44 -0.29 -13.65 16 6 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 7 C 0.05 1.48 5.29 -17.82 -0.09 1.38 16 8 N -0.90 -25.32 11.29 55.43 0.63 -24.70 16 9 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 10 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 13 N -0.69 -13.95 6.27 -107.96 -0.68 -14.63 16 14 C 0.07 1.32 5.44 -3.83 -0.02 1.30 16 15 C -0.08 -1.11 5.65 -27.88 -0.16 -1.27 16 16 C -0.03 -0.40 5.13 -104.64 -0.54 -0.94 16 17 C -0.13 -1.53 9.70 -39.56 -0.38 -1.91 16 18 C -0.08 -0.84 10.04 -39.60 -0.40 -1.23 16 19 C -0.20 -2.28 8.26 -39.43 -0.33 -2.61 16 20 C 0.10 1.24 6.48 -39.22 -0.25 0.99 16 21 O -0.31 -3.67 10.37 -19.42 -0.20 -3.87 16 22 C 0.60 6.11 3.42 101.05 0.35 6.45 16 23 F -0.17 -1.70 15.56 2.25 0.04 -1.66 16 24 F -0.13 -1.29 17.53 2.25 0.04 -1.25 16 25 F -0.17 -1.62 15.56 2.25 0.04 -1.58 16 26 C -0.12 -1.53 9.64 -39.43 -0.38 -1.91 16 27 H 0.03 0.60 6.65 -51.93 -0.35 0.26 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.10 2.61 5.94 -51.93 -0.31 2.30 16 31 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.32 5.80 6.65 -39.29 -0.26 5.54 16 34 H 0.08 1.52 7.92 -51.93 -0.41 1.11 16 35 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 37 H 0.09 1.17 8.08 -51.93 -0.42 0.75 16 38 H 0.13 1.46 8.06 -52.48 -0.42 1.03 16 39 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.13 1.29 5.10 -52.49 -0.27 1.03 16 41 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 351.21 15.07 5.29 5.29 Total: -1.00 -28.18 351.21 -7.64 -35.82 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -5.35 Total: 4.08 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -2.42 Total: -13.75 kcal Atomic # 7 Polarization: -39.28 SS G_CDS: -0.05 Total: -39.33 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.20 Total: -3.87 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.11 Total: -4.49 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -28.18 -7.64 -35.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563365312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.377 kcal (2) G-P(sol) polarization free energy of solvation -28.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds