Wall clock time and date at job start Tue Mar 31 2020 12:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47440 * 2 1 4 4 H 1.09003 * 109.47336 * 305.64450 * 3 2 1 5 5 C 1.50700 * 109.47402 * 185.64180 * 3 2 1 6 6 H 1.08005 * 120.00175 * 239.72370 * 5 3 2 7 7 C 1.37878 * 120.00114 * 60.00379 * 5 3 2 8 8 N 1.31520 * 119.99631 * 359.97438 * 7 5 3 9 9 Si 1.86795 * 120.00224 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.47256 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47371 * 119.99201 * 9 7 5 12 12 H 1.48492 * 109.47378 * 239.99533 * 9 7 5 13 13 N 1.46901 * 109.47513 * 65.63902 * 3 2 1 14 14 C 1.46896 * 111.00626 * 205.22674 * 13 3 2 15 15 C 1.52998 * 109.47019 * 185.19176 * 14 13 3 16 16 C 1.50704 * 109.46915 * 179.97438 * 15 14 13 17 17 C 1.38280 * 119.97493 * 269.72928 * 16 15 14 18 18 C 1.38246 * 120.11107 * 179.72322 * 17 16 15 19 19 C 1.38168 * 120.05725 * 0.55027 * 18 17 16 20 20 C 1.38712 * 119.94087 * 359.72396 * 19 18 17 21 21 O 1.35900 * 120.05639 * 179.97438 * 20 19 18 22 22 C 1.42902 * 116.99559 * 0.02562 * 21 20 19 23 23 F 1.39895 * 109.47281 * 60.00440 * 22 21 20 24 24 F 1.39902 * 109.46802 * 180.02562 * 22 21 20 25 25 F 1.39903 * 109.47418 * 299.99811 * 22 21 20 26 26 C 1.38134 * 119.96855 * 89.99917 * 16 15 14 27 27 H 1.09000 * 109.46970 * 294.41704 * 1 2 3 28 28 H 1.09003 * 109.46617 * 54.41759 * 1 2 3 29 29 H 1.08998 * 109.46988 * 174.41294 * 1 2 3 30 30 H 1.09003 * 109.47392 * 239.99613 * 2 1 3 31 31 H 1.08996 * 109.47201 * 119.99905 * 2 1 3 32 32 H 0.97000 * 119.99428 * 180.02562 * 8 7 5 33 33 H 1.00906 * 110.99334 * 329.18568 * 13 3 2 34 34 H 1.09000 * 109.46694 * 305.19195 * 14 13 3 35 35 H 1.09000 * 109.46985 * 65.19184 * 14 13 3 36 36 H 1.09000 * 109.47403 * 299.99585 * 15 14 13 37 37 H 1.09000 * 109.47235 * 60.00161 * 15 14 13 38 38 H 1.08005 * 119.94684 * 359.97438 * 17 16 15 39 39 H 1.08002 * 119.97330 * 180.25104 * 18 17 16 40 40 H 1.07998 * 120.02785 * 179.70396 * 19 18 17 41 41 H 1.08001 * 120.02516 * 359.97438 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5966 1.9847 -0.8351 5 6 3.5406 1.4447 -0.1397 6 1 4.1539 1.8904 0.6296 7 6 4.1302 0.8830 -1.2522 8 7 3.3832 0.3448 -2.1913 9 14 5.9902 0.8852 -1.4251 10 1 6.5966 1.5459 -0.2414 11 1 6.4805 -0.5135 -1.5169 12 1 6.3723 1.6254 -2.6544 13 7 1.6647 2.0946 1.2617 14 6 1.5790 3.5517 1.0960 15 6 1.3144 4.2046 2.4542 16 6 1.2271 5.6995 2.2844 17 6 2.3659 6.4755 2.3986 18 6 2.2900 7.8465 2.2377 19 6 1.0735 8.4459 1.9734 20 6 -0.0713 7.6703 1.8640 21 8 -1.2691 8.2575 1.6047 22 6 -1.2761 9.6787 1.4558 23 9 -0.4422 10.0404 0.3924 24 9 -2.5800 10.1139 1.1953 25 9 -0.8133 10.2734 2.6345 26 6 0.0085 6.2939 2.0202 27 1 -0.3633 0.4248 0.9358 28 1 -0.3633 0.5980 -0.8358 29 1 -0.3633 -1.0228 -0.1001 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7981 -0.0507 -2.9739 33 1 0.7987 1.7196 1.6188 34 1 2.5180 3.9269 0.6892 35 1 0.7649 3.7924 0.4124 36 1 0.3753 3.8294 2.8610 37 1 2.1285 3.9639 3.1378 38 1 3.3170 6.0094 2.6099 39 1 3.1815 8.4500 2.3233 40 1 1.0139 9.5175 1.8525 41 1 -0.8813 5.6878 1.9350 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563365312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:19 Heat of formation + Delta-G solvation = -197.537972 kcal Electronic energy + Delta-G solvation = -26149.270696 eV Core-core repulsion = 21806.095251 eV Total energy + Delta-G solvation = -4343.175444 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -51.51335 -49.22873 -49.10358 -41.34642 -39.18970 -38.09697 -35.21784 -33.77713 -32.28896 -31.52413 -29.34092 -27.81616 -27.01512 -24.89317 -23.84928 -23.60924 -22.35413 -21.42611 -20.29279 -20.23030 -19.93284 -18.37319 -17.71099 -17.30837 -16.80172 -16.52496 -16.34172 -16.15863 -15.87788 -15.78796 -15.56929 -15.50774 -15.32632 -15.21544 -15.03518 -14.81516 -14.59541 -14.28426 -14.23387 -13.64668 -13.51030 -13.21904 -13.09952 -12.83905 -12.61397 -12.55039 -12.44448 -12.16283 -11.94405 -11.84342 -11.51869 -11.38094 -10.98624 -10.41640 -9.92039 -9.57648 -8.99246 -8.05109 -6.16954 0.14146 0.24919 0.40949 1.41681 1.43954 1.55483 1.74244 2.45494 2.54786 2.70592 2.93285 3.20226 3.51158 3.62888 3.82626 3.97748 4.17296 4.26230 4.30259 4.43110 4.51330 4.54609 4.59275 4.72729 4.75805 4.89100 5.00515 5.07921 5.12236 5.23414 5.27757 5.30681 5.36214 5.40805 5.61600 5.63179 5.77136 5.91099 5.93082 6.38043 6.51934 6.96978 7.04092 7.52190 8.98345 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.002670 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.147280 B =10486.206322 C =11066.788852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.224 3.776 4 H -0.035 1.035 5 C -0.509 4.509 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.921 5.921 9 Si 0.955 3.045 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.283 1.283 13 N -0.686 5.686 14 C 0.079 3.921 15 C -0.066 4.066 16 C -0.044 4.044 17 C -0.136 4.136 18 C -0.075 4.075 19 C -0.202 4.202 20 C 0.089 3.911 21 O -0.320 6.320 22 C 0.608 3.392 23 F -0.165 7.165 24 F -0.130 7.130 25 F -0.163 7.163 26 C -0.131 4.131 27 H 0.061 0.939 28 H 0.033 0.967 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.259 0.741 33 H 0.330 0.670 34 H 0.050 0.950 35 H 0.011 0.989 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.141 0.859 39 H 0.159 0.841 40 H 0.142 0.858 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.422 18.058 10.238 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.160 4.160 3 C 0.116 3.884 4 H -0.017 1.017 5 C -0.548 4.548 6 H 0.070 0.930 7 C -0.191 4.191 8 N -0.562 5.562 9 Si 0.782 3.218 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.210 1.210 13 N -0.318 5.318 14 C -0.051 4.051 15 C -0.103 4.103 16 C -0.045 4.045 17 C -0.154 4.154 18 C -0.093 4.093 19 C -0.221 4.221 20 C 0.047 3.953 21 O -0.240 6.240 22 C 0.518 3.482 23 F -0.148 7.148 24 F -0.112 7.112 25 F -0.145 7.145 26 C -0.149 4.149 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.148 0.852 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.159 0.841 39 H 0.176 0.824 40 H 0.159 0.841 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.940 17.941 10.283 22.151 hybrid contribution 0.047 0.297 -1.198 1.235 sum -7.893 18.237 9.085 21.850 Atomic orbital electron populations 1.21753 0.96265 1.01101 1.00558 1.21592 0.94245 0.98925 1.01258 1.18926 0.94094 0.90684 0.84712 1.01740 1.21522 0.92844 1.36241 1.04196 0.92964 1.25706 1.02306 0.95446 0.95633 1.70020 1.36155 1.40087 1.09915 0.85542 0.80812 0.77660 0.77831 1.19217 1.20685 1.20958 1.60560 1.36981 1.03344 1.30882 1.21711 0.99062 0.88699 0.95598 1.20522 1.04015 0.88719 0.97053 1.19812 0.92236 0.96083 0.96358 1.21440 0.98931 0.94068 1.00995 1.21257 0.97508 0.94736 0.95815 1.21671 0.92864 1.00623 1.06929 1.18796 0.82244 0.92939 1.01317 1.86387 1.32838 1.18001 1.86773 1.19249 0.74793 0.79346 0.74851 1.93305 1.72044 1.91777 1.57628 1.93311 1.35957 1.88065 1.93846 1.93302 1.88588 1.84269 1.48298 1.20437 0.99464 0.90672 1.04347 0.92033 0.94746 0.92466 0.91575 0.94237 0.93169 0.85162 0.93184 0.97129 0.89542 0.89412 0.84072 0.82350 0.84065 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.13 9.65 71.98 0.69 -4.43 16 2 C -0.12 -5.67 5.36 30.59 0.16 -5.51 16 3 C 0.22 11.14 2.02 44.17 0.09 11.23 16 4 H -0.03 -1.96 7.85 -2.39 -0.02 -1.98 16 5 C -0.51 -28.14 8.55 25.60 0.22 -27.92 16 6 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.38 5.29 84.65 0.45 0.83 16 8 N -0.92 -53.11 11.29 21.45 0.24 -52.87 16 9 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 10 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 N -0.69 -27.68 6.27 -495.47 -3.11 -30.79 16 14 C 0.08 2.82 5.44 86.30 0.47 3.29 16 15 C -0.07 -1.72 5.65 29.85 0.17 -1.55 16 16 C -0.04 -1.08 5.13 -19.88 -0.10 -1.19 16 17 C -0.14 -3.05 9.70 22.28 0.22 -2.84 16 18 C -0.08 -1.47 10.04 22.25 0.22 -1.25 16 19 C -0.20 -4.24 8.26 22.37 0.18 -4.05 16 20 C 0.09 2.09 6.48 22.51 0.15 2.23 16 21 O -0.32 -7.20 10.37 -92.42 -0.96 -8.16 16 22 C 0.61 11.50 3.42 113.37 0.39 11.88 16 23 F -0.17 -3.18 15.56 44.97 0.70 -2.48 16 24 F -0.13 -2.34 17.53 44.97 0.79 -1.55 16 25 F -0.16 -2.89 15.56 44.97 0.70 -2.19 16 26 C -0.13 -3.15 9.64 22.37 0.22 -2.93 16 27 H 0.06 1.93 6.65 -2.39 -0.02 1.91 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.07 3.54 5.94 -2.39 -0.01 3.53 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 33 H 0.33 11.67 6.65 -89.69 -0.60 11.07 16 34 H 0.05 2.03 7.92 -2.39 -0.02 2.01 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.09 1.97 8.09 -2.39 -0.02 1.95 16 37 H 0.09 2.27 8.08 -2.39 -0.02 2.25 16 38 H 0.14 2.89 8.06 -2.91 -0.02 2.86 16 39 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 40 H 0.14 2.54 5.10 -2.91 -0.01 2.53 16 41 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 Total: -1.00 -60.96 351.21 4.38 -56.59 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.46 Total: 17.68 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: 3.52 Total: -22.20 kcal Atomic # 7 Polarization: -80.79 SS G_CDS: -2.86 Total: -83.66 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.96 Total: -8.16 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 2.19 Total: -6.22 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -60.96 4.38 -56.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563365312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.952 kcal (2) G-P(sol) polarization free energy of solvation -60.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds