Wall clock time and date at job start Tue Mar 31 2020 12:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46924 * 2 1 4 4 H 1.08995 * 109.46770 * 304.61531 * 3 2 1 5 5 C 1.50704 * 109.46959 * 184.62203 * 3 2 1 6 6 H 1.07999 * 119.99840 * 239.99907 * 5 3 2 7 7 C 1.37878 * 120.00115 * 59.99525 * 5 3 2 8 8 N 1.31514 * 120.00166 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99862 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46793 * 90.00626 * 9 7 5 11 11 H 1.48496 * 109.47053 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47363 * 330.00567 * 9 7 5 13 13 N 1.46896 * 109.47031 * 64.62043 * 3 2 1 14 14 C 1.46903 * 110.99633 * 205.89461 * 13 3 2 15 15 C 1.50705 * 109.46846 * 183.93156 * 14 13 3 16 16 C 1.31180 * 122.01064 * 264.98114 * 15 14 13 17 17 S 1.75917 * 109.87704 * 180.02562 * 16 15 14 18 18 C 1.76021 * 90.67785 * 359.97438 * 17 16 15 19 19 N 1.32040 * 125.59117 * 179.97438 * 18 17 16 20 20 C 1.36706 * 119.99905 * 354.43124 * 19 18 17 21 21 C 1.39750 * 120.15578 * 274.10467 * 20 19 18 22 22 C 1.37912 * 119.83120 * 179.73947 * 21 20 19 23 23 C 1.38389 * 120.16556 * 0.51705 * 22 21 20 24 24 C 1.38397 * 120.32154 * 359.76086 * 23 22 21 25 25 C 1.37911 * 120.16413 * 359.97438 * 24 23 22 26 26 N 1.35394 * 108.82414 * 359.97438 * 18 17 16 27 27 H 0.96997 * 122.67762 * 179.73426 * 26 18 17 28 28 H 1.09001 * 109.46581 * 184.52354 * 1 2 3 29 29 H 1.09000 * 109.47246 * 304.52140 * 1 2 3 30 30 H 1.08997 * 109.46834 * 64.52321 * 1 2 3 31 31 H 1.08998 * 109.47710 * 239.99767 * 2 1 3 32 32 H 1.09004 * 109.47221 * 119.99996 * 2 1 3 33 33 H 0.96992 * 120.00475 * 180.02562 * 8 7 5 34 34 H 1.00904 * 110.99968 * 81.94477 * 13 3 2 35 35 H 1.08994 * 109.46956 * 63.93547 * 14 13 3 36 36 H 1.08998 * 109.46944 * 303.92815 * 14 13 3 37 37 H 1.07992 * 125.05994 * 0.03904 * 16 15 14 38 38 H 1.08001 * 120.08519 * 0.02562 * 21 20 19 39 39 H 1.08006 * 119.91520 * 180.25504 * 22 21 20 40 40 H 1.07994 * 119.84027 * 179.74244 * 23 22 21 41 41 H 1.07996 * 119.91587 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.08236 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6107 1.9796 -0.8457 5 6 3.5427 1.4441 -0.1145 6 1 4.1431 1.8904 0.6644 7 6 4.1509 0.8757 -1.2136 8 7 3.4198 0.3326 -2.1623 9 14 6.0135 0.8783 -1.3558 10 1 6.5595 -0.3518 -0.7280 11 1 6.4004 0.9162 -2.7889 12 1 6.5611 2.0724 -0.6634 13 7 1.6435 2.1020 1.2513 14 6 1.5451 3.5567 1.0714 15 6 1.2319 4.2064 2.3946 16 6 0.0037 4.4945 2.7543 17 16 0.0065 5.2405 4.3475 18 6 1.7597 5.1074 4.4298 19 7 2.5142 5.5061 5.4373 20 6 1.9536 6.1802 6.4862 21 6 1.7895 7.5666 6.4224 22 6 1.2182 8.2393 7.4821 23 6 0.8176 7.5463 8.6110 24 6 0.9823 6.1741 8.6836 25 6 1.5471 5.4872 7.6295 26 7 2.2079 4.5292 3.2904 27 1 3.1486 4.3626 3.1227 28 1 -0.3632 -1.0245 0.0811 29 1 -0.3634 0.5824 0.8467 30 1 -0.3633 0.4420 -0.9277 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8476 -0.0676 -2.9353 34 1 2.2812 1.8724 1.9988 35 1 0.7513 3.7818 0.3592 36 1 2.4925 3.9409 0.6932 37 1 -0.8778 4.3022 2.1609 38 1 2.1050 8.1092 5.5435 39 1 1.0869 9.3102 7.4325 40 1 0.3746 8.0789 9.4395 41 1 0.6677 5.6399 9.5679 42 1 1.6753 4.4164 7.6877 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566429680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:13 Heat of formation + Delta-G solvation = 69.128535 kcal Electronic energy + Delta-G solvation = -22932.560606 eV Core-core repulsion = 19617.851052 eV Total energy + Delta-G solvation = -3314.709554 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.14513 -39.20781 -36.41783 -35.21180 -32.79544 -31.52412 -30.99711 -30.40940 -28.85289 -27.16322 -25.25751 -23.59336 -22.59584 -22.53006 -21.32148 -20.57626 -19.63858 -18.13084 -17.40831 -16.78732 -16.45293 -15.54597 -15.53735 -15.05488 -14.67657 -14.25325 -14.20789 -13.83793 -13.77737 -13.50339 -13.34102 -12.80215 -12.67393 -12.27109 -12.08996 -11.73944 -11.47411 -11.39446 -11.29365 -11.05393 -11.01851 -10.76785 -10.43762 -10.34066 -10.21725 -9.72666 -9.71124 -9.63348 -9.21606 -9.04024 -8.51484 -8.18184 -7.56441 -7.34557 -6.13894 -4.27887 0.96808 1.32622 1.37525 1.48086 1.87996 2.22195 2.77681 3.18557 3.26551 3.28069 3.67716 4.28039 4.72430 4.86553 4.87995 4.94012 5.06707 5.12878 5.33641 5.34193 5.43499 5.52517 5.64562 5.79724 5.90335 5.95592 6.09020 6.30168 6.31026 6.43410 6.43428 6.48154 6.61218 6.65997 6.81193 6.95696 7.07325 7.08471 7.26119 7.42574 7.63300 7.85794 7.86710 7.93909 8.11923 8.40582 8.81929 9.40840 10.86602 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.002768 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.173629 B =10111.787223 C =10905.376682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C 0.216 3.784 4 H 0.036 0.964 5 C -0.553 4.553 6 H 0.053 0.947 7 C 0.070 3.930 8 N -0.881 5.881 9 Si 0.889 3.111 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.681 5.681 14 C 0.118 3.882 15 C 0.135 3.865 16 C -0.252 4.252 17 S 0.013 5.987 18 C 0.390 3.610 19 N -0.561 5.561 20 C 0.133 3.867 21 C -0.136 4.136 22 C -0.104 4.104 23 C -0.140 4.140 24 C -0.104 4.104 25 C -0.133 4.133 26 N -0.605 5.605 27 H 0.428 0.572 28 H 0.025 0.975 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.092 0.908 32 H 0.031 0.969 33 H 0.263 0.737 34 H 0.330 0.670 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.180 0.820 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.379 11.518 13.830 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.054 0.946 5 C -0.592 4.592 6 H 0.071 0.929 7 C -0.133 4.133 8 N -0.519 5.519 9 Si 0.717 3.283 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.311 5.311 14 C -0.014 4.014 15 C 0.023 3.977 16 C -0.393 4.393 17 S 0.254 5.746 18 C 0.010 3.990 19 N -0.293 5.293 20 C 0.031 3.969 21 C -0.158 4.158 22 C -0.122 4.122 23 C -0.159 4.159 24 C -0.122 4.122 25 C -0.155 4.155 26 N -0.227 5.227 27 H 0.268 0.732 28 H 0.045 0.955 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.198 0.802 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.137 0.863 41 H 0.140 0.860 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.215 11.765 14.594 20.467 hybrid contribution 2.850 -0.347 -1.102 3.076 sum -5.365 11.418 13.492 18.471 Atomic orbital electron populations 1.21726 0.98858 0.98708 1.00425 1.21496 0.92233 0.98864 1.01839 1.19190 0.92960 0.91423 0.85589 0.94601 1.21791 0.92466 1.38989 1.05910 0.92908 1.24913 0.98077 0.94755 0.95563 1.69859 1.35021 1.37586 1.09431 0.86643 0.85804 0.78490 0.77345 1.20560 1.21102 1.20058 1.61087 1.55498 1.03850 1.10619 1.20760 1.01875 0.90533 0.88279 1.19521 0.87283 0.97442 0.93487 1.24211 1.00114 1.14387 1.00553 1.85629 1.01879 1.68631 1.18413 1.24599 0.92584 0.92611 0.89181 1.67979 1.29267 1.28132 1.03951 1.18400 0.93818 0.92093 0.92573 1.21405 1.01374 0.93351 0.99642 1.20976 0.98227 0.99649 0.93393 1.21112 1.02060 0.94417 0.98323 1.20994 0.98717 0.94421 0.98104 1.21395 1.00171 0.99939 0.93975 1.41583 1.11289 1.56546 1.13316 0.73222 0.95548 0.93040 0.94462 0.89010 0.95039 0.92678 0.85425 0.88776 0.93099 0.80242 0.86244 0.86059 0.86254 0.86021 0.86079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.85 37.16 0.37 -2.30 16 2 C -0.11 -2.36 5.45 -26.73 -0.15 -2.50 16 3 C 0.22 4.81 1.98 -68.86 -0.14 4.67 16 4 H 0.04 0.88 7.83 -51.93 -0.41 0.47 16 5 C -0.55 -13.68 8.36 -34.44 -0.29 -13.97 16 6 H 0.05 1.29 7.73 -52.49 -0.41 0.89 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -23.54 11.30 55.43 0.63 -22.91 16 9 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.68 -12.39 5.62 -109.22 -0.61 -13.00 16 14 C 0.12 1.81 5.88 -4.97 -0.03 1.78 16 15 C 0.13 1.83 6.22 -82.34 -0.51 1.32 16 16 C -0.25 -3.20 10.81 28.97 0.31 -2.88 16 17 S 0.01 0.16 22.42 -107.50 -2.41 -2.25 16 18 C 0.39 5.55 8.33 -88.76 -0.74 4.81 16 19 N -0.56 -8.51 10.48 -11.02 -0.12 -8.63 16 20 C 0.13 1.85 4.95 -84.57 -0.42 1.43 16 21 C -0.14 -1.70 10.00 -39.14 -0.39 -2.09 16 22 C -0.10 -1.07 10.03 -39.65 -0.40 -1.47 16 23 C -0.14 -1.36 10.04 -39.47 -0.40 -1.76 16 24 C -0.10 -1.08 10.03 -39.64 -0.40 -1.48 16 25 C -0.13 -1.69 10.00 -39.14 -0.39 -2.08 16 26 N -0.61 -8.18 5.62 -9.99 -0.06 -8.23 16 27 H 0.43 5.49 8.96 -40.82 -0.37 5.12 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.94 7.62 -51.93 -0.40 0.54 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.09 2.31 5.96 -51.93 -0.31 2.00 16 32 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 34 H 0.33 6.09 8.34 -39.29 -0.33 5.77 16 35 H 0.09 1.38 8.06 -51.93 -0.42 0.97 16 36 H 0.05 0.84 7.97 -51.93 -0.41 0.42 16 37 H 0.18 1.98 8.06 -52.49 -0.42 1.56 16 38 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 42 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -26.96 367.06 -11.70 -38.66 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -5.98 Total: 10.53 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -3.66 Total: -14.81 kcal Atomic # 7 Polarization: -52.61 SS G_CDS: -0.16 Total: -52.77 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 16 Polarization: 0.16 SS G_CDS: -2.41 Total: -2.25 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.96 -11.70 -38.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566429680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.793 kcal (2) G-P(sol) polarization free energy of solvation -26.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds