Wall clock time and date at job start Tue Mar 31 2020 12:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46924 * 2 1 4 4 H 1.08995 * 109.46770 * 304.61531 * 3 2 1 5 5 C 1.50704 * 109.46959 * 184.62203 * 3 2 1 6 6 H 1.07999 * 119.99840 * 239.99907 * 5 3 2 7 7 C 1.37878 * 120.00115 * 59.99525 * 5 3 2 8 8 N 1.31514 * 120.00166 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 119.99862 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.46793 * 90.00626 * 9 7 5 11 11 H 1.48496 * 109.47053 * 210.00332 * 9 7 5 12 12 H 1.48499 * 109.47363 * 330.00567 * 9 7 5 13 13 N 1.46896 * 109.47031 * 64.62043 * 3 2 1 14 14 C 1.46903 * 110.99633 * 205.89461 * 13 3 2 15 15 C 1.50705 * 109.46846 * 183.93156 * 14 13 3 16 16 C 1.31180 * 122.01064 * 264.98114 * 15 14 13 17 17 S 1.75917 * 109.87704 * 180.02562 * 16 15 14 18 18 C 1.76021 * 90.67785 * 359.97438 * 17 16 15 19 19 N 1.32040 * 125.59117 * 179.97438 * 18 17 16 20 20 C 1.36706 * 119.99905 * 354.43124 * 19 18 17 21 21 C 1.39750 * 120.15578 * 274.10467 * 20 19 18 22 22 C 1.37912 * 119.83120 * 179.73947 * 21 20 19 23 23 C 1.38389 * 120.16556 * 0.51705 * 22 21 20 24 24 C 1.38397 * 120.32154 * 359.76086 * 23 22 21 25 25 C 1.37911 * 120.16413 * 359.97438 * 24 23 22 26 26 N 1.35394 * 108.82414 * 359.97438 * 18 17 16 27 27 H 0.96997 * 122.67762 * 179.73426 * 26 18 17 28 28 H 1.09001 * 109.46581 * 184.52354 * 1 2 3 29 29 H 1.09000 * 109.47246 * 304.52140 * 1 2 3 30 30 H 1.08997 * 109.46834 * 64.52321 * 1 2 3 31 31 H 1.08998 * 109.47710 * 239.99767 * 2 1 3 32 32 H 1.09004 * 109.47221 * 119.99996 * 2 1 3 33 33 H 0.96992 * 120.00475 * 180.02562 * 8 7 5 34 34 H 1.00904 * 110.99968 * 81.94477 * 13 3 2 35 35 H 1.08994 * 109.46956 * 63.93547 * 14 13 3 36 36 H 1.08998 * 109.46944 * 303.92815 * 14 13 3 37 37 H 1.07992 * 125.05994 * 0.03904 * 16 15 14 38 38 H 1.08001 * 120.08519 * 0.02562 * 21 20 19 39 39 H 1.08006 * 119.91520 * 180.25504 * 22 21 20 40 40 H 1.07994 * 119.84027 * 179.74244 * 23 22 21 41 41 H 1.07996 * 119.91587 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.08236 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6107 1.9796 -0.8457 5 6 3.5427 1.4441 -0.1145 6 1 4.1431 1.8904 0.6644 7 6 4.1509 0.8757 -1.2136 8 7 3.4198 0.3326 -2.1623 9 14 6.0135 0.8783 -1.3558 10 1 6.5595 -0.3518 -0.7280 11 1 6.4004 0.9162 -2.7889 12 1 6.5611 2.0724 -0.6634 13 7 1.6435 2.1020 1.2513 14 6 1.5451 3.5567 1.0714 15 6 1.2319 4.2064 2.3946 16 6 0.0037 4.4945 2.7543 17 16 0.0065 5.2405 4.3475 18 6 1.7597 5.1074 4.4298 19 7 2.5142 5.5061 5.4373 20 6 1.9536 6.1802 6.4862 21 6 1.7895 7.5666 6.4224 22 6 1.2182 8.2393 7.4821 23 6 0.8176 7.5463 8.6110 24 6 0.9823 6.1741 8.6836 25 6 1.5471 5.4872 7.6295 26 7 2.2079 4.5292 3.2904 27 1 3.1486 4.3626 3.1227 28 1 -0.3632 -1.0245 0.0811 29 1 -0.3634 0.5824 0.8467 30 1 -0.3633 0.4420 -0.9277 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 3.8476 -0.0676 -2.9353 34 1 2.2812 1.8724 1.9988 35 1 0.7513 3.7818 0.3592 36 1 2.4925 3.9409 0.6932 37 1 -0.8778 4.3022 2.1609 38 1 2.1050 8.1092 5.5435 39 1 1.0869 9.3102 7.4325 40 1 0.3746 8.0789 9.4395 41 1 0.6677 5.6399 9.5679 42 1 1.6753 4.4164 7.6877 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566429680.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:12 Heat of formation + Delta-G solvation = 55.281787 kcal Electronic energy + Delta-G solvation = -22933.161046 eV Core-core repulsion = 19617.851052 eV Total energy + Delta-G solvation = -3315.309994 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20979 -40.10448 -37.97961 -36.29791 -34.43557 -33.12505 -31.83713 -31.65161 -29.79796 -28.77930 -26.73158 -24.84561 -24.06704 -23.43730 -22.31421 -21.68745 -21.31524 -19.17247 -18.77133 -18.30284 -17.38646 -16.88848 -16.51300 -16.48534 -16.02710 -15.59971 -15.22621 -15.17419 -14.83651 -14.77507 -14.33101 -14.27273 -13.81173 -13.66348 -13.45503 -13.09945 -13.05909 -12.82934 -12.54702 -12.50033 -12.33921 -12.18416 -12.09097 -11.51668 -11.48615 -11.30669 -11.25611 -11.00088 -10.71805 -10.46488 -9.89433 -9.15051 -9.11112 -8.40651 -8.07462 -6.28413 -0.01035 0.34991 0.47600 0.51174 0.83891 1.14210 1.37294 1.41008 1.47367 1.73497 2.38907 2.82378 3.14199 3.62793 3.80167 3.98871 4.05498 4.07945 4.27486 4.29407 4.55720 4.61222 4.64758 4.70095 4.75282 4.79946 4.83186 4.94715 4.97208 5.13172 5.18974 5.46967 5.48733 5.51652 5.59471 5.61482 5.61688 5.64799 5.77993 5.90332 6.07846 6.09135 6.16017 6.32086 6.71115 6.85254 6.95747 7.43145 8.89478 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020122 B = 0.002768 C = 0.002567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.173629 B =10111.787223 C =10905.376682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.103 4.103 3 C 0.224 3.776 4 H 0.013 0.987 5 C -0.560 4.560 6 H 0.051 0.949 7 C 0.025 3.975 8 N -0.907 5.907 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 N -0.672 5.672 14 C 0.125 3.875 15 C 0.127 3.873 16 C -0.242 4.242 17 S 0.033 5.967 18 C 0.377 3.623 19 N -0.582 5.582 20 C 0.105 3.895 21 C -0.152 4.152 22 C -0.103 4.103 23 C -0.135 4.135 24 C -0.103 4.103 25 C -0.151 4.151 26 N -0.606 5.606 27 H 0.428 0.572 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.061 0.939 32 H 0.024 0.976 33 H 0.262 0.738 34 H 0.329 0.671 35 H 0.104 0.896 36 H 0.039 0.961 37 H 0.200 0.800 38 H 0.115 0.885 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.502 12.772 15.605 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.142 4.142 3 C 0.115 3.885 4 H 0.031 0.969 5 C -0.599 4.599 6 H 0.070 0.930 7 C -0.176 4.176 8 N -0.546 5.546 9 Si 0.771 3.229 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.301 5.301 14 C -0.007 4.007 15 C 0.015 3.985 16 C -0.383 4.383 17 S 0.275 5.725 18 C -0.002 4.002 19 N -0.315 5.315 20 C 0.004 3.996 21 C -0.173 4.173 22 C -0.121 4.121 23 C -0.154 4.154 24 C -0.122 4.122 25 C -0.173 4.173 26 N -0.228 5.228 27 H 0.268 0.732 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.079 0.921 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.122 0.878 36 H 0.057 0.943 37 H 0.217 0.783 38 H 0.133 0.867 39 H 0.166 0.834 40 H 0.170 0.830 41 H 0.165 0.835 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.343 13.034 16.390 22.931 hybrid contribution 3.155 -0.662 -1.553 3.578 sum -6.188 12.372 14.837 20.285 Atomic orbital electron populations 1.21586 0.96212 0.99927 1.00755 1.21369 0.94580 0.98353 0.99924 1.18935 0.91479 0.91599 0.86464 0.96914 1.22149 0.94039 1.38159 1.05573 0.93037 1.25571 1.01546 0.94870 0.95624 1.69979 1.36261 1.38498 1.09847 0.85777 0.81711 0.78331 0.77082 1.20597 1.21116 1.19666 1.60974 1.54811 1.05625 1.08674 1.20663 1.01679 0.88714 0.89648 1.19202 0.87663 0.98660 0.92980 1.24507 1.00360 1.12830 1.00597 1.85548 1.00722 1.68232 1.17988 1.24764 0.93394 0.92858 0.89222 1.68001 1.30478 1.28489 1.04577 1.18625 0.95411 0.92829 0.92748 1.21508 1.02340 0.92930 1.00532 1.21327 0.96970 1.01029 0.92772 1.21527 1.00836 0.94203 0.98841 1.21328 0.97615 0.95086 0.98138 1.21487 1.01337 0.99866 0.94596 1.41570 1.11355 1.56599 1.13287 0.73239 0.94024 0.91920 0.94668 0.92092 0.95695 0.92872 0.85528 0.87811 0.94308 0.78291 0.86680 0.83425 0.83026 0.83532 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.73 9.85 71.98 0.71 -4.02 16 2 C -0.10 -4.64 5.45 30.60 0.17 -4.47 16 3 C 0.22 10.04 1.98 44.17 0.09 10.13 16 4 H 0.01 0.64 7.83 -2.39 -0.02 0.62 16 5 C -0.56 -28.01 8.36 25.60 0.21 -27.80 16 6 H 0.05 2.53 7.73 -2.91 -0.02 2.51 16 7 C 0.02 1.27 5.29 84.65 0.45 1.72 16 8 N -0.91 -49.31 11.30 21.45 0.24 -49.07 16 9 Si 0.94 41.66 29.54 68.60 2.03 43.69 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 13 N -0.67 -24.19 5.62 -499.46 -2.81 -27.00 16 14 C 0.12 3.78 5.88 85.56 0.50 4.29 16 15 C 0.13 3.34 6.22 41.64 0.26 3.60 16 16 C -0.24 -5.74 10.81 67.60 0.73 -5.01 16 17 S 0.03 0.81 22.42 -56.49 -1.27 -0.45 16 18 C 0.38 10.68 8.33 179.70 1.50 12.18 16 19 N -0.58 -17.89 10.48 -188.77 -1.98 -19.86 16 20 C 0.10 2.91 4.95 39.11 0.19 3.10 16 21 C -0.15 -3.66 10.00 22.56 0.23 -3.44 16 22 C -0.10 -1.87 10.03 22.23 0.22 -1.65 16 23 C -0.14 -2.21 10.04 22.34 0.22 -1.98 16 24 C -0.10 -1.93 10.03 22.23 0.22 -1.71 16 25 C -0.15 -3.75 10.00 22.56 0.23 -3.53 16 26 N -0.61 -16.33 5.62 -185.51 -1.04 -17.37 16 27 H 0.43 11.18 8.96 -92.71 -0.83 10.35 16 28 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 2.17 7.62 -2.39 -0.02 2.15 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 31 H 0.06 3.13 5.96 -2.39 -0.01 3.11 16 32 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 34 H 0.33 12.08 8.34 -89.69 -0.75 11.33 16 35 H 0.10 2.95 8.06 -2.39 -0.02 2.93 16 36 H 0.04 1.28 7.97 -2.39 -0.02 1.26 16 37 H 0.20 3.87 8.06 -2.91 -0.02 3.84 16 38 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 39 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.15 1.49 8.06 -2.91 -0.02 1.46 16 41 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 42 H 0.11 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -58.11 367.06 0.56 -57.55 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.54 Total: 31.11 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 5.93 Total: -18.59 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -5.59 Total: -113.30 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -1.27 Total: -0.45 kcal Total: -58.11 0.56 -57.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566429680.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.827 kcal (2) G-P(sol) polarization free energy of solvation -58.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds