Wall clock time and date at job start Tue Mar 31 2020 12:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47296 * 2 1 4 4 H 1.09000 * 109.47249 * 180.50428 * 3 2 1 5 5 C 1.50703 * 109.47040 * 300.50624 * 3 2 1 6 6 H 1.07996 * 119.99798 * 119.99942 * 5 3 2 7 7 C 1.37880 * 119.99833 * 299.99675 * 5 3 2 8 8 N 1.31510 * 119.99904 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99906 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47225 * 89.99831 * 9 7 5 11 11 H 1.48497 * 109.46750 * 209.99956 * 9 7 5 12 12 H 1.48505 * 109.46974 * 329.99620 * 9 7 5 13 13 N 1.46902 * 109.46886 * 60.50428 * 3 2 1 14 14 C 1.46894 * 111.00199 * 86.18898 * 13 3 2 15 15 C 1.50702 * 109.47425 * 185.17796 * 14 13 3 16 16 C 1.31180 * 122.01298 * 264.97601 * 15 14 13 17 17 S 1.75916 * 109.87685 * 180.02562 * 16 15 14 18 18 C 1.76022 * 90.67544 * 0.02562 * 17 16 15 19 19 N 1.32042 * 125.58759 * 180.25917 * 18 17 16 20 20 C 1.36705 * 120.00105 * 354.36712 * 19 18 17 21 21 C 1.39746 * 120.15899 * 274.41010 * 20 19 18 22 22 C 1.37914 * 119.83522 * 179.81278 * 21 20 19 23 23 C 1.38386 * 120.16200 * 0.43822 * 22 21 20 24 24 C 1.38395 * 120.32462 * 359.79624 * 23 22 21 25 25 C 1.37908 * 120.16294 * 359.97438 * 24 23 22 26 26 N 1.35390 * 108.82371 * 359.97438 * 18 17 16 27 27 H 0.97002 * 122.67432 * 179.97438 * 26 18 17 28 28 H 1.08998 * 109.47341 * 305.16981 * 1 2 3 29 29 H 1.09001 * 109.46852 * 65.16185 * 1 2 3 30 30 H 1.09001 * 109.47142 * 185.16298 * 1 2 3 31 31 H 1.08998 * 109.47029 * 239.99840 * 2 1 3 32 32 H 1.09007 * 109.46982 * 119.99701 * 2 1 3 33 33 H 0.96999 * 120.00233 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99595 * 210.14587 * 13 3 2 35 35 H 1.09009 * 109.47369 * 65.17976 * 14 13 3 36 36 H 1.09000 * 109.47070 * 305.18185 * 14 13 3 37 37 H 1.08000 * 125.05983 * 0.06079 * 16 15 14 38 38 H 1.07999 * 120.08376 * 0.02562 * 21 20 19 39 39 H 1.07999 * 119.92142 * 180.23144 * 22 21 20 40 40 H 1.08000 * 119.83978 * 179.76231 * 23 22 21 41 41 H 1.08004 * 119.91500 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.08373 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 -0.0090 5 6 1.5275 2.1565 -1.2242 6 1 0.9075 3.0343 -1.1173 7 6 1.8502 1.6892 -2.4806 8 7 1.4033 2.3125 -3.5488 9 14 2.9221 0.1705 -2.6653 10 1 2.0627 -1.0399 -2.7073 11 1 3.7038 0.2666 -3.9242 12 1 3.8520 0.0776 -1.5111 13 7 1.5603 2.1315 1.2055 14 6 2.4685 1.9053 2.3377 15 6 1.8813 2.5182 3.5830 16 6 2.2056 3.7244 3.9838 17 16 1.3381 4.1165 5.4631 18 6 0.5521 2.5416 5.4443 19 7 -0.3186 2.1067 6.3366 20 6 -0.5913 2.8558 7.4471 21 6 0.2160 2.7478 8.5826 22 6 -0.0630 3.5096 9.6979 23 6 -1.1447 4.3726 9.6976 24 6 -1.9516 4.4813 8.5784 25 6 -1.6821 3.7294 7.4542 26 7 0.9818 1.8519 4.3614 27 1 0.6747 0.9549 4.1562 28 1 -0.3634 0.5919 0.8400 29 1 -0.3633 0.4317 -0.9326 30 1 -0.3633 -1.0235 0.0925 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6300 1.9836 -4.4327 34 1 1.4361 3.1178 1.0330 35 1 3.4339 2.3655 2.1267 36 1 2.6019 0.8340 2.4881 37 1 2.9011 4.3795 3.4802 38 1 1.0584 2.0719 8.5856 39 1 0.5623 3.4299 10.5749 40 1 -1.3607 4.9639 10.5752 41 1 -2.7944 5.1567 8.5856 42 1 -2.3128 3.8149 6.5818 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566429682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:16 Heat of formation + Delta-G solvation = 81.190960 kcal Electronic energy + Delta-G solvation = -23037.472112 eV Core-core repulsion = 19723.285624 eV Total energy + Delta-G solvation = -3314.186488 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.21436 -39.25051 -36.79399 -35.31518 -32.93210 -31.70109 -31.02550 -30.45632 -28.88899 -27.48788 -25.40779 -23.52472 -23.24400 -22.62319 -21.40698 -20.61674 -19.52275 -18.34709 -17.40637 -16.86046 -16.37518 -15.82885 -15.55574 -15.30342 -14.76312 -14.31942 -14.19702 -13.93183 -13.76130 -13.67858 -13.52823 -13.23194 -12.85027 -12.66628 -12.41009 -12.04269 -11.76963 -11.53638 -11.34857 -11.03809 -10.75691 -10.66417 -10.41449 -10.39473 -10.32612 -10.13019 -9.74129 -9.44217 -9.11169 -9.06870 -8.68636 -8.21955 -7.79854 -7.43039 -6.20076 -4.20363 0.92293 1.28949 1.30786 1.42418 1.79368 2.12904 2.71869 3.18686 3.26511 3.30162 3.64758 4.28189 4.64313 4.75900 4.84968 4.86099 4.99374 5.04759 5.12771 5.30930 5.33141 5.47813 5.49788 5.61871 5.69651 5.81995 5.92805 5.98777 6.08326 6.27954 6.32195 6.40880 6.44763 6.54185 6.56642 6.73622 6.76929 6.97993 7.03177 7.07361 7.34351 7.44350 7.66910 7.81203 8.08471 8.44256 8.83608 9.40980 10.92562 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.030858 B = 0.002565 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.169743 B =10913.468373 C =11003.903808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.114 4.114 3 C 0.187 3.813 4 H 0.005 0.995 5 C -0.517 4.517 6 H 0.080 0.920 7 C 0.075 3.925 8 N -0.894 5.894 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.297 1.297 12 H -0.269 1.269 13 N -0.672 5.672 14 C 0.107 3.893 15 C 0.145 3.855 16 C -0.268 4.268 17 S 0.019 5.981 18 C 0.389 3.611 19 N -0.559 5.559 20 C 0.131 3.869 21 C -0.137 4.137 22 C -0.104 4.104 23 C -0.139 4.139 24 C -0.103 4.103 25 C -0.132 4.132 26 N -0.597 5.597 27 H 0.429 0.571 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.021 0.979 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.265 0.735 34 H 0.347 0.653 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.179 0.821 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.488 2.384 21.934 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.152 4.152 3 C 0.079 3.921 4 H 0.022 0.978 5 C -0.556 4.556 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.194 1.194 13 N -0.304 5.304 14 C -0.025 4.025 15 C 0.032 3.968 16 C -0.409 4.409 17 S 0.261 5.739 18 C 0.009 3.991 19 N -0.291 5.291 20 C 0.030 3.970 21 C -0.158 4.158 22 C -0.123 4.123 23 C -0.158 4.158 24 C -0.122 4.122 25 C -0.154 4.154 26 N -0.218 5.218 27 H 0.270 0.730 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.166 0.834 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.196 0.804 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.495 2.309 22.849 22.971 hybrid contribution 1.427 -1.252 -1.434 2.379 sum 0.932 1.057 21.416 21.462 Atomic orbital electron populations 1.21467 0.95436 0.98162 1.03213 1.21780 0.97491 0.98024 0.97947 1.19595 0.93271 0.91355 0.87915 0.97767 1.20962 1.32849 1.13421 0.88325 0.90235 1.24884 0.95394 0.96703 0.95783 1.69874 1.44975 1.40275 0.98072 0.86881 0.80843 0.83751 0.76906 1.20342 1.22459 1.19397 1.60528 1.46999 1.17622 1.05255 1.20838 0.94427 1.00477 0.86808 1.19305 0.91151 0.92443 0.93946 1.24254 1.13089 1.00133 1.03382 1.85671 1.45706 1.15562 1.27000 1.24620 0.92268 0.92071 0.90171 1.67986 1.22259 1.32377 1.06452 1.18399 0.95565 0.91588 0.91487 1.21395 0.99846 1.01008 0.93551 1.20974 0.97423 0.96166 0.97708 1.21120 0.96172 1.00066 0.98490 1.21005 0.99325 0.98886 0.92991 1.21402 0.98461 0.96334 0.99181 1.41460 1.40060 1.18952 1.21349 0.73043 0.92323 0.91756 0.96018 0.93892 0.95100 0.92458 0.83410 0.92324 0.89865 0.80356 0.86271 0.86060 0.86232 0.85971 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.48 37.16 0.35 -2.12 16 2 C -0.11 -2.31 5.29 -26.73 -0.14 -2.45 16 3 C 0.19 3.91 1.89 -68.86 -0.13 3.78 16 4 H 0.00 0.10 6.90 -51.93 -0.36 -0.26 16 5 C -0.52 -13.19 7.98 -34.44 -0.27 -13.47 16 6 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 7 C 0.08 2.03 5.45 -17.82 -0.10 1.93 16 8 N -0.89 -25.97 13.96 55.43 0.77 -25.20 16 9 Si 0.89 20.81 24.37 -169.99 -4.14 16.66 16 10 H -0.28 -6.42 6.87 56.52 0.39 -6.03 16 11 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -5.99 6.53 56.52 0.37 -5.62 16 13 N -0.67 -11.51 5.43 -109.21 -0.59 -12.10 16 14 C 0.11 1.43 5.86 -4.98 -0.03 1.40 16 15 C 0.14 1.79 6.30 -82.35 -0.52 1.27 16 16 C -0.27 -3.14 10.81 28.97 0.31 -2.82 16 17 S 0.02 0.23 22.42 -107.50 -2.41 -2.18 16 18 C 0.39 5.25 8.33 -88.76 -0.74 4.51 16 19 N -0.56 -8.12 10.48 -11.02 -0.12 -8.23 16 20 C 0.13 1.76 4.95 -84.57 -0.42 1.34 16 21 C -0.14 -1.62 10.00 -39.14 -0.39 -2.02 16 22 C -0.10 -1.03 10.03 -39.65 -0.40 -1.43 16 23 C -0.14 -1.31 10.04 -39.47 -0.40 -1.71 16 24 C -0.10 -1.05 10.03 -39.64 -0.40 -1.45 16 25 C -0.13 -1.64 10.00 -39.14 -0.39 -2.03 16 26 N -0.60 -7.48 5.62 -9.99 -0.06 -7.54 16 27 H 0.43 5.02 8.96 -40.82 -0.37 4.66 16 28 H 0.06 1.11 7.46 -51.93 -0.39 0.72 16 29 H 0.06 1.44 7.39 -51.93 -0.38 1.05 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.93 3.28 -51.93 -0.17 0.76 16 32 H 0.03 0.54 7.46 -51.93 -0.39 0.15 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.35 6.11 8.24 -39.29 -0.32 5.79 16 35 H 0.06 0.74 8.08 -51.92 -0.42 0.32 16 36 H 0.08 1.07 7.41 -51.93 -0.38 0.68 16 37 H 0.18 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 41 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 357.04 15.07 5.38 5.38 Total: -1.00 -28.87 357.04 -10.56 -39.42 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.73 Total: 9.03 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -3.66 Total: -15.25 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.01 Total: -53.07 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.14 Total: 16.66 kcal Atomic # 16 Polarization: 0.23 SS G_CDS: -2.41 Total: -2.18 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.87 -10.56 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566429682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.614 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds