Wall clock time and date at job start Tue Mar 31 2020 12:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47296 * 2 1 4 4 H 1.09000 * 109.47249 * 180.50428 * 3 2 1 5 5 C 1.50703 * 109.47040 * 300.50624 * 3 2 1 6 6 H 1.07996 * 119.99798 * 119.99942 * 5 3 2 7 7 C 1.37880 * 119.99833 * 299.99675 * 5 3 2 8 8 N 1.31510 * 119.99904 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99906 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.47225 * 89.99831 * 9 7 5 11 11 H 1.48497 * 109.46750 * 209.99956 * 9 7 5 12 12 H 1.48505 * 109.46974 * 329.99620 * 9 7 5 13 13 N 1.46902 * 109.46886 * 60.50428 * 3 2 1 14 14 C 1.46894 * 111.00199 * 86.18898 * 13 3 2 15 15 C 1.50702 * 109.47425 * 185.17796 * 14 13 3 16 16 C 1.31180 * 122.01298 * 264.97601 * 15 14 13 17 17 S 1.75916 * 109.87685 * 180.02562 * 16 15 14 18 18 C 1.76022 * 90.67544 * 0.02562 * 17 16 15 19 19 N 1.32042 * 125.58759 * 180.25917 * 18 17 16 20 20 C 1.36705 * 120.00105 * 354.36712 * 19 18 17 21 21 C 1.39746 * 120.15899 * 274.41010 * 20 19 18 22 22 C 1.37914 * 119.83522 * 179.81278 * 21 20 19 23 23 C 1.38386 * 120.16200 * 0.43822 * 22 21 20 24 24 C 1.38395 * 120.32462 * 359.79624 * 23 22 21 25 25 C 1.37908 * 120.16294 * 359.97438 * 24 23 22 26 26 N 1.35390 * 108.82371 * 359.97438 * 18 17 16 27 27 H 0.97002 * 122.67432 * 179.97438 * 26 18 17 28 28 H 1.08998 * 109.47341 * 305.16981 * 1 2 3 29 29 H 1.09001 * 109.46852 * 65.16185 * 1 2 3 30 30 H 1.09001 * 109.47142 * 185.16298 * 1 2 3 31 31 H 1.08998 * 109.47029 * 239.99840 * 2 1 3 32 32 H 1.09007 * 109.46982 * 119.99701 * 2 1 3 33 33 H 0.96999 * 120.00233 * 180.02562 * 8 7 5 34 34 H 1.00900 * 110.99595 * 210.14587 * 13 3 2 35 35 H 1.09009 * 109.47369 * 65.17976 * 14 13 3 36 36 H 1.09000 * 109.47070 * 305.18185 * 14 13 3 37 37 H 1.08000 * 125.05983 * 0.06079 * 16 15 14 38 38 H 1.07999 * 120.08376 * 0.02562 * 21 20 19 39 39 H 1.07999 * 119.92142 * 180.23144 * 22 21 20 40 40 H 1.08000 * 119.83978 * 179.76231 * 23 22 21 41 41 H 1.08004 * 119.91500 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.08373 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 -0.0090 5 6 1.5275 2.1565 -1.2242 6 1 0.9075 3.0343 -1.1173 7 6 1.8502 1.6892 -2.4806 8 7 1.4033 2.3125 -3.5488 9 14 2.9221 0.1705 -2.6653 10 1 2.0627 -1.0399 -2.7073 11 1 3.7038 0.2666 -3.9242 12 1 3.8520 0.0776 -1.5111 13 7 1.5603 2.1315 1.2055 14 6 2.4685 1.9053 2.3377 15 6 1.8813 2.5182 3.5830 16 6 2.2056 3.7244 3.9838 17 16 1.3381 4.1165 5.4631 18 6 0.5521 2.5416 5.4443 19 7 -0.3186 2.1067 6.3366 20 6 -0.5913 2.8558 7.4471 21 6 0.2160 2.7478 8.5826 22 6 -0.0630 3.5096 9.6979 23 6 -1.1447 4.3726 9.6976 24 6 -1.9516 4.4813 8.5784 25 6 -1.6821 3.7294 7.4542 26 7 0.9818 1.8519 4.3614 27 1 0.6747 0.9549 4.1562 28 1 -0.3634 0.5919 0.8400 29 1 -0.3633 0.4317 -0.9326 30 1 -0.3633 -1.0235 0.0925 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.6300 1.9836 -4.4327 34 1 1.4361 3.1178 1.0330 35 1 3.4339 2.3655 2.1267 36 1 2.6019 0.8340 2.4881 37 1 2.9011 4.3795 3.4802 38 1 1.0584 2.0719 8.5856 39 1 0.5623 3.4299 10.5749 40 1 -1.3607 4.9639 10.5752 41 1 -2.7944 5.1567 8.5856 42 1 -2.3128 3.8149 6.5818 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566429682.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:16 Heat of formation + Delta-G solvation = 63.672865 kcal Electronic energy + Delta-G solvation = -23038.231753 eV Core-core repulsion = 19723.285624 eV Total energy + Delta-G solvation = -3314.946130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.18980 -40.10326 -38.27229 -36.31950 -34.53508 -33.33635 -31.83446 -31.59888 -29.78209 -29.06455 -26.76972 -24.97322 -24.53915 -23.43619 -22.34185 -21.60569 -21.14510 -19.38141 -18.52316 -18.32826 -17.55357 -17.16770 -16.52071 -16.43150 -15.82868 -15.72821 -15.30436 -15.10159 -14.97613 -14.79453 -14.76260 -14.49807 -14.32500 -13.85942 -13.59802 -13.33432 -12.95754 -12.68858 -12.52046 -12.46224 -12.30045 -12.09185 -11.94435 -11.83156 -11.38617 -11.29860 -11.21453 -10.92475 -10.70064 -10.68153 -9.89212 -9.18872 -9.10815 -8.41013 -8.27170 -6.29860 -0.00272 0.33962 0.47780 0.51633 0.84127 1.14273 1.33805 1.36398 1.46142 1.76852 2.33068 2.82783 3.09551 3.50203 3.79186 3.91196 4.05765 4.08014 4.24487 4.29094 4.37071 4.47838 4.55822 4.56316 4.63101 4.70328 4.73332 4.73769 4.94848 4.96755 5.13316 5.15465 5.35943 5.39896 5.49102 5.59414 5.60519 5.61815 5.65235 5.76488 5.92477 5.97688 6.13172 6.47051 6.62902 6.83034 6.86509 7.35480 8.89150 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.030858 B = 0.002565 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.169743 B =10913.468373 C =11003.903808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.117 4.117 3 C 0.193 3.807 4 H 0.007 0.993 5 C -0.508 4.508 6 H 0.041 0.959 7 C 0.017 3.983 8 N -0.948 5.948 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.305 1.305 12 H -0.242 1.242 13 N -0.674 5.674 14 C 0.112 3.888 15 C 0.139 3.861 16 C -0.262 4.262 17 S 0.025 5.975 18 C 0.378 3.622 19 N -0.580 5.580 20 C 0.105 3.895 21 C -0.150 4.150 22 C -0.103 4.103 23 C -0.136 4.136 24 C -0.104 4.104 25 C -0.152 4.152 26 N -0.596 5.596 27 H 0.432 0.568 28 H 0.062 0.938 29 H 0.026 0.974 30 H 0.044 0.956 31 H 0.030 0.970 32 H 0.066 0.934 33 H 0.264 0.736 34 H 0.342 0.658 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.198 0.802 38 H 0.118 0.882 39 H 0.148 0.852 40 H 0.151 0.849 41 H 0.145 0.855 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.608 1.816 24.735 24.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.155 4.155 3 C 0.084 3.916 4 H 0.025 0.975 5 C -0.546 4.546 6 H 0.059 0.941 7 C -0.180 4.180 8 N -0.588 5.588 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.233 1.233 12 H -0.166 1.166 13 N -0.306 5.306 14 C -0.020 4.020 15 C 0.026 3.974 16 C -0.403 4.403 17 S 0.267 5.733 18 C -0.002 4.002 19 N -0.313 5.313 20 C 0.004 3.996 21 C -0.172 4.172 22 C -0.121 4.121 23 C -0.155 4.155 24 C -0.123 4.123 25 C -0.174 4.174 26 N -0.218 5.218 27 H 0.272 0.728 28 H 0.081 0.919 29 H 0.045 0.955 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.160 0.840 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.215 0.785 38 H 0.136 0.864 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.630 1.737 25.697 25.763 hybrid contribution 0.999 -0.948 -2.166 2.567 sum 1.629 0.789 23.530 23.600 Atomic orbital electron populations 1.21374 0.95482 0.99394 1.01349 1.21772 0.97472 0.97266 0.98959 1.19397 0.93044 0.91823 0.87379 0.97505 1.21249 1.30937 1.12081 0.90332 0.94121 1.25684 0.97028 0.99747 0.95566 1.70031 1.47552 1.42594 0.98646 0.85950 0.79539 0.80196 0.77281 1.19816 1.23290 1.16614 1.60418 1.48230 1.17038 1.04871 1.20847 0.94189 1.01547 0.85416 1.19156 0.91679 0.92693 0.93863 1.24550 1.12733 1.00050 1.02951 1.85646 1.45434 1.15023 1.27171 1.24766 0.92472 0.92617 0.90347 1.68001 1.22738 1.33446 1.07140 1.18615 0.96597 0.92616 0.91736 1.21513 0.99950 1.01757 0.93942 1.21330 0.97728 0.95234 0.97809 1.21521 0.95275 0.99599 0.99083 1.21319 1.00024 0.98471 0.92471 1.21482 0.98577 0.97357 0.99963 1.41471 1.40031 1.19080 1.21168 0.72768 0.91873 0.95460 0.93664 0.95152 0.91568 0.92716 0.83969 0.90808 0.88654 0.78520 0.86417 0.83380 0.83125 0.83721 0.86978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.51 9.48 71.98 0.68 -3.82 16 2 C -0.12 -4.40 5.29 30.59 0.16 -4.24 16 3 C 0.19 7.75 1.89 44.17 0.08 7.83 16 4 H 0.01 0.30 6.90 -2.39 -0.02 0.28 16 5 C -0.51 -26.27 7.98 25.60 0.20 -26.06 16 6 H 0.04 2.37 7.84 -2.91 -0.02 2.34 16 7 C 0.02 0.95 5.45 84.66 0.46 1.41 16 8 N -0.95 -57.00 13.96 21.45 0.30 -56.70 16 9 Si 0.94 42.52 24.37 68.60 1.67 44.19 16 10 H -0.27 -11.95 6.87 99.48 0.68 -11.27 16 11 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.24 -9.81 6.53 99.48 0.65 -9.16 16 13 N -0.67 -22.09 5.43 -499.45 -2.71 -24.80 16 14 C 0.11 2.69 5.86 85.56 0.50 3.19 16 15 C 0.14 3.18 6.30 41.64 0.26 3.44 16 16 C -0.26 -5.65 10.81 67.60 0.73 -4.92 16 17 S 0.03 0.59 22.42 -56.49 -1.27 -0.68 16 18 C 0.38 10.01 8.33 179.70 1.50 11.51 16 19 N -0.58 -16.91 10.48 -188.78 -1.98 -18.89 16 20 C 0.11 2.81 4.95 39.11 0.19 3.01 16 21 C -0.15 -3.44 10.00 22.56 0.23 -3.22 16 22 C -0.10 -1.79 10.03 22.23 0.22 -1.57 16 23 C -0.14 -2.17 10.04 22.34 0.22 -1.95 16 24 C -0.10 -1.94 10.03 22.23 0.22 -1.72 16 25 C -0.15 -3.73 10.00 22.56 0.23 -3.51 16 26 N -0.60 -14.25 5.62 -185.52 -1.04 -15.29 16 27 H 0.43 9.60 8.96 -92.71 -0.83 8.77 16 28 H 0.06 2.31 7.46 -2.39 -0.02 2.29 16 29 H 0.03 1.20 7.39 -2.39 -0.02 1.19 16 30 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.03 1.23 3.28 -2.39 -0.01 1.22 16 32 H 0.07 2.05 7.46 -2.38 -0.02 2.03 16 33 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 34 H 0.34 11.87 8.24 -89.69 -0.74 11.13 16 35 H 0.07 1.61 8.08 -2.38 -0.02 1.59 16 36 H 0.10 2.10 7.41 -2.39 -0.02 2.08 16 37 H 0.20 3.42 8.06 -2.91 -0.02 3.40 16 38 H 0.12 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 40 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 41 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 42 H 0.11 2.83 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -64.30 357.04 0.27 -64.03 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: -0.60 Total: 28.75 kcal Atomic # 6 Polarization: -26.51 SS G_CDS: 5.90 Total: -20.61 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -5.43 Total: -115.68 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 1.67 Total: 44.19 kcal Atomic # 16 Polarization: 0.59 SS G_CDS: -1.27 Total: -0.68 kcal Total: -64.30 0.27 -64.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566429682.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.704 kcal (2) G-P(sol) polarization free energy of solvation -64.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds