Wall clock time and date at job start Tue Mar 31 2020 12:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47471 * 2 1 4 4 H 1.08995 * 109.47543 * 183.89638 * 3 2 1 5 5 C 1.50698 * 109.47216 * 303.89987 * 3 2 1 6 6 H 1.08005 * 119.99692 * 115.36077 * 5 3 2 7 7 C 1.37872 * 119.99928 * 295.35904 * 5 3 2 8 8 N 1.31512 * 119.99994 * 354.19132 * 7 5 3 9 9 Si 1.86806 * 119.99951 * 174.19241 * 7 5 3 10 10 H 1.48499 * 109.46667 * 269.99840 * 9 7 5 11 11 H 1.48497 * 109.47071 * 29.99905 * 9 7 5 12 12 H 1.48494 * 109.47021 * 150.00140 * 9 7 5 13 13 N 1.46904 * 109.46785 * 63.89975 * 3 2 1 14 14 C 1.46904 * 111.00176 * 80.80979 * 13 3 2 15 15 C 1.50696 * 109.46968 * 184.82712 * 14 13 3 16 16 C 1.38842 * 119.78194 * 90.00105 * 15 14 13 17 17 C 1.37787 * 120.74943 * 179.97438 * 16 15 14 18 18 C 1.39035 * 119.85735 * 0.02562 * 17 16 15 19 19 O 1.34709 * 133.23135 * 179.97438 * 18 17 16 20 20 C 1.34964 * 110.86149 * 179.97438 * 19 18 17 21 21 C 1.46804 * 125.13953 * 179.97438 * 20 19 18 22 22 O 1.21583 * 120.00034 * 179.97438 * 21 20 19 23 23 O 1.34856 * 120.00601 * 0.02562 * 21 20 19 24 24 C 1.45194 * 117.00549 * 179.97438 * 23 21 20 25 25 C 1.35895 * 109.71765 * 0.02562 * 20 19 18 26 26 C 1.40739 * 119.15716 * 0.02562 * 18 17 16 27 27 C 1.36617 * 119.77673 * 269.72070 * 15 14 13 28 28 H 1.09002 * 109.47241 * 64.86555 * 1 2 3 29 29 H 1.08999 * 109.47223 * 184.86939 * 1 2 3 30 30 H 1.09001 * 109.46894 * 304.86579 * 1 2 3 31 31 H 1.08999 * 109.47200 * 240.00030 * 2 1 3 32 32 H 1.09008 * 109.47139 * 120.00535 * 2 1 3 33 33 H 0.96997 * 120.00459 * 354.16805 * 8 7 5 34 34 H 1.00897 * 111.00397 * 316.84867 * 13 3 2 35 35 H 1.09005 * 109.46830 * 304.82036 * 14 13 3 36 36 H 1.08995 * 109.47071 * 64.82160 * 14 13 3 37 37 H 1.08002 * 119.62116 * 359.97438 * 16 15 14 38 38 H 1.07999 * 120.07360 * 179.97438 * 17 16 15 39 39 H 1.09004 * 109.47127 * 299.99798 * 24 23 21 40 40 H 1.09001 * 109.46845 * 60.00144 * 24 23 21 41 41 H 1.08996 * 109.47394 * 179.97438 * 24 23 21 42 42 H 1.08004 * 126.96176 * 180.02562 * 25 20 19 43 43 H 1.08003 * 120.14258 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1278 1.4432 -0.0698 5 6 1.4604 2.1802 -1.1793 6 1 0.7875 3.0098 -1.0195 7 6 1.7892 1.7963 -2.4620 8 7 2.6949 0.8629 -2.6572 9 14 0.9483 2.6019 -3.9226 10 1 -0.2752 1.8368 -4.2732 11 1 0.5767 3.9964 -3.5726 12 1 1.8748 2.6129 -5.0830 13 7 1.6288 2.1072 1.2438 14 6 2.5285 1.7561 2.3508 15 6 2.0091 2.3587 3.6306 16 6 1.1269 1.6378 4.4241 17 6 0.6401 2.1692 5.5984 18 6 1.0332 3.4417 5.9976 19 8 0.7345 4.2072 7.0651 20 6 1.3806 5.3906 7.0037 21 6 1.2809 6.4606 8.0039 22 8 1.9067 7.4923 7.8548 23 8 0.4960 6.2989 9.0885 24 6 0.4460 7.3980 10.0359 25 6 2.1365 5.4423 5.8756 26 6 1.9268 4.1686 5.1890 27 6 2.4140 3.6086 4.0053 28 1 -0.3634 0.4365 -0.9304 29 1 -0.3633 -1.0239 0.0872 30 1 -0.3633 0.5875 0.8432 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8900 33 1 3.1921 0.5046 -1.9054 34 1 0.6711 1.8864 1.4723 35 1 2.5739 0.6717 2.4520 36 1 3.5261 2.1439 2.1451 37 1 0.8188 0.6491 4.1173 38 1 -0.0460 1.5990 6.2071 39 1 1.4465 7.5887 10.4243 40 1 0.0738 8.2921 9.5358 41 1 -0.2201 7.1385 10.8587 42 1 2.7649 6.2589 5.5518 43 1 3.1037 4.1635 3.3865 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568180773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:02 Heat of formation + Delta-G solvation = -73.349983 kcal Electronic energy + Delta-G solvation = -25351.876189 eV Core-core repulsion = 21555.942681 eV Total energy + Delta-G solvation = -3795.933509 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.69114 -41.45769 -39.73326 -38.20377 -37.81053 -34.84341 -34.03724 -32.96547 -31.16147 -31.13136 -28.86923 -27.98519 -26.04184 -25.43601 -25.18005 -23.03550 -22.58877 -21.97468 -21.35521 -19.61014 -18.84586 -18.59989 -18.16345 -17.99242 -17.07108 -16.94876 -16.35369 -16.00456 -15.65020 -15.37058 -15.25643 -15.08483 -14.85497 -14.43932 -14.32445 -14.27179 -14.12312 -13.93640 -13.48901 -13.16957 -13.08544 -12.96647 -12.69403 -12.59762 -12.19515 -12.11997 -11.97085 -11.95138 -11.88784 -11.84381 -11.61052 -11.43338 -10.58866 -10.38203 -9.73907 -9.42631 -8.99173 -8.46449 -6.16978 -0.75351 0.18700 0.54439 0.99156 1.56962 1.60191 1.64187 1.73402 1.81512 2.52210 2.63169 3.26117 3.28482 3.46369 3.59409 3.75985 3.80876 3.98358 4.14299 4.21526 4.25770 4.29160 4.30166 4.38051 4.41885 4.56061 4.58513 4.67101 4.70813 4.75527 4.95091 4.98670 5.02597 5.07948 5.13217 5.15187 5.26982 5.38899 5.47180 5.54553 5.58246 5.87070 6.00504 6.24632 6.35464 6.57791 6.78768 6.82830 7.57595 8.89097 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023242 B = 0.002373 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.411638 B =11798.084775 C =12415.630095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.145 4.145 3 C 0.207 3.793 4 H -0.004 1.004 5 C -0.573 4.573 6 H 0.043 0.957 7 C -0.028 4.028 8 N -0.940 5.940 9 Si 1.107 2.893 10 H -0.275 1.275 11 H -0.277 1.277 12 H -0.290 1.290 13 N -0.678 5.678 14 C 0.100 3.900 15 C -0.097 4.097 16 C -0.063 4.063 17 C -0.108 4.108 18 C 0.062 3.938 19 O -0.181 6.181 20 C -0.037 4.037 21 C 0.557 3.443 22 O -0.501 6.501 23 O -0.353 6.353 24 C 0.026 3.974 25 C -0.082 4.082 26 C -0.163 4.163 27 C -0.042 4.042 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.038 0.962 32 H 0.044 0.956 33 H 0.258 0.742 34 H 0.336 0.664 35 H 0.042 0.958 36 H 0.065 0.935 37 H 0.159 0.841 38 H 0.165 0.835 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.137 0.863 42 H 0.189 0.811 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.952 5.754 24.356 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.185 4.185 3 C 0.098 3.902 4 H 0.014 0.986 5 C -0.612 4.612 6 H 0.061 0.939 7 C -0.226 4.226 8 N -0.579 5.579 9 Si 0.931 3.069 10 H -0.201 1.201 11 H -0.203 1.203 12 H -0.216 1.216 13 N -0.309 5.309 14 C -0.028 4.028 15 C -0.098 4.098 16 C -0.081 4.081 17 C -0.126 4.126 18 C 0.014 3.986 19 O -0.083 6.083 20 C -0.085 4.085 21 C 0.402 3.598 22 O -0.391 6.391 23 O -0.269 6.269 24 C -0.066 4.066 25 C -0.101 4.101 26 C -0.164 4.164 27 C -0.060 4.060 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.155 0.845 35 H 0.060 0.940 36 H 0.083 0.917 37 H 0.176 0.824 38 H 0.182 0.818 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.155 0.845 42 H 0.206 0.794 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.757 6.563 22.796 24.194 hybrid contribution 0.384 -0.616 1.539 1.702 sum -4.373 5.947 24.335 25.430 Atomic orbital electron populations 1.21463 0.95100 0.99986 1.01314 1.22076 0.97526 0.99757 0.99142 1.19104 0.93420 0.89579 0.88059 0.98616 1.22103 1.29573 1.17208 0.92284 0.93911 1.26867 0.96742 0.95976 1.02991 1.70868 1.23779 1.28289 1.34992 0.83033 0.75384 0.75514 0.72935 1.20132 1.20263 1.21569 1.60753 1.05812 1.62300 1.02069 1.20847 0.96803 0.97462 0.87726 1.19529 0.99024 0.94892 0.96339 1.21228 0.94218 1.00547 0.92096 1.20219 1.03333 0.90847 0.98163 1.20101 0.97824 0.94301 0.86365 1.84047 1.59325 1.23892 1.41008 1.20589 1.02646 0.86881 0.98360 1.19213 0.76728 0.83749 0.80115 1.90945 1.44380 1.27280 1.76542 1.86659 1.61377 1.46891 1.31968 1.23764 1.04588 0.87507 0.90726 1.23060 0.98108 0.97438 0.91507 1.19952 1.02879 0.95224 0.98373 1.20331 0.98247 0.94325 0.93134 0.94116 0.92959 0.92617 0.94361 0.93715 0.93117 0.84456 0.94013 0.91682 0.82387 0.81777 0.90954 0.91087 0.84494 0.79392 0.84762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.61 9.38 71.98 0.68 -3.94 16 2 C -0.15 -6.22 5.46 30.59 0.17 -6.06 16 3 C 0.21 9.79 1.95 44.17 0.09 9.88 16 4 H 0.00 -0.21 7.31 -2.39 -0.02 -0.23 16 5 C -0.57 -30.81 7.42 25.60 0.19 -30.62 16 6 H 0.04 2.36 7.82 -2.91 -0.02 2.34 16 7 C -0.03 -1.54 5.27 84.65 0.45 -1.09 16 8 N -0.94 -55.37 12.88 21.45 0.28 -55.09 16 9 Si 1.11 49.98 29.91 68.60 2.05 52.03 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 13 N -0.68 -26.55 6.24 -499.47 -3.12 -29.66 16 14 C 0.10 3.18 5.62 85.56 0.48 3.67 16 15 C -0.10 -2.60 5.31 -20.10 -0.11 -2.70 16 16 C -0.06 -1.36 9.66 22.31 0.22 -1.14 16 17 C -0.11 -2.21 10.07 22.35 0.23 -1.98 16 18 C 0.06 1.55 7.41 23.07 0.17 1.72 16 19 O -0.18 -4.56 10.60 -12.36 -0.13 -4.69 16 20 C -0.04 -0.90 7.10 23.97 0.17 -0.73 16 21 C 0.56 12.70 7.94 70.06 0.56 13.26 16 22 O -0.50 -12.74 16.62 19.56 0.33 -12.41 16 23 O -0.35 -6.80 10.58 -55.94 -0.59 -7.39 16 24 C 0.03 0.28 10.57 113.37 1.20 1.48 16 25 C -0.08 -1.92 10.81 23.80 0.26 -1.66 16 26 C -0.16 -4.22 6.38 -20.24 -0.13 -4.35 16 27 C -0.04 -1.12 9.68 22.25 0.22 -0.90 16 28 H 0.04 1.76 7.30 -2.39 -0.02 1.74 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.88 6.24 -2.39 -0.01 1.86 16 31 H 0.04 1.88 6.27 -2.39 -0.01 1.86 16 32 H 0.04 1.67 7.04 -2.38 -0.02 1.66 16 33 H 0.26 15.29 6.04 -92.71 -0.56 14.73 16 34 H 0.34 12.35 6.43 -89.70 -0.58 11.78 16 35 H 0.04 1.25 6.94 -2.38 -0.02 1.24 16 36 H 0.06 2.17 8.07 -2.39 -0.02 2.15 16 37 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.19 3.66 8.06 -2.91 -0.02 3.63 16 43 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -66.35 362.43 4.30 -62.05 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.67 Total: 20.34 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 4.82 Total: -25.16 kcal Atomic # 7 Polarization: -81.91 SS G_CDS: -2.84 Total: -84.75 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: -0.40 Total: -24.50 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 2.05 Total: 52.03 kcal Total: -66.35 4.30 -62.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568180773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.303 kcal (2) G-P(sol) polarization free energy of solvation -66.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds