Wall clock time and date at job start Tue Mar 31 2020 11:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.31887 * 122.59517 * 2 1 4 4 S 1.75352 * 111.38624 * 180.02562 * 3 2 1 5 5 C 1.75751 * 92.18685 * 359.97438 * 4 3 2 6 6 N 1.33918 * 131.28435 * 180.28742 * 5 4 3 7 7 C 1.31270 * 121.04382 * 180.19657 * 6 5 4 8 8 N 1.32110 * 122.18105 * 359.47645 * 7 6 5 9 9 C 1.32452 * 121.18399 * 0.26250 * 8 7 6 10 10 N 1.38327 * 120.52745 * 180.02562 * 9 8 7 11 11 C 1.46839 * 111.00224 * 63.19239 * 10 9 8 12 12 C 1.53039 * 109.52524 * 174.16106 * 11 10 9 13 13 C 1.53120 * 109.27839 * 59.18005 * 12 11 10 14 14 C 1.52997 * 109.52355 * 182.44236 * 13 12 11 15 15 C 1.50701 * 109.46994 * 294.68182 * 14 13 12 16 16 H 1.08000 * 119.99774 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99789 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99946 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47172 * 90.00173 * 19 17 15 21 21 H 1.48503 * 109.46940 * 209.99960 * 19 17 15 22 22 H 1.48498 * 109.47401 * 329.99947 * 19 17 15 23 23 C 1.53123 * 109.15700 * 302.34636 * 13 12 11 24 24 C 1.46848 * 110.99748 * 298.98035 * 10 9 8 25 25 C 1.39729 * 109.61042 * 359.97438 * 5 4 3 26 26 H 1.09000 * 109.47351 * 264.56486 * 1 2 3 27 27 H 1.08995 * 109.46886 * 24.56905 * 1 2 3 28 28 H 1.09001 * 109.46770 * 144.56351 * 1 2 3 29 29 H 1.08001 * 124.30226 * 0.02562 * 3 2 1 30 30 H 1.08000 * 118.90589 * 179.76273 * 7 6 5 31 31 H 1.08999 * 109.46227 * 294.17979 * 11 10 9 32 32 H 1.08997 * 109.46363 * 54.14305 * 11 10 9 33 33 H 1.08994 * 109.50086 * 299.23641 * 12 11 10 34 34 H 1.09000 * 109.49984 * 179.11902 * 12 11 10 35 35 H 1.09004 * 109.52424 * 62.24492 * 13 12 11 36 36 H 1.09002 * 109.47256 * 54.68195 * 14 13 12 37 37 H 1.09001 * 109.47081 * 174.67824 * 14 13 12 38 38 H 0.96997 * 119.99667 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.50542 * 297.71404 * 23 13 12 40 40 H 1.09002 * 109.50362 * 177.59601 * 23 13 12 41 41 H 1.09000 * 109.46379 * 305.85534 * 24 10 9 42 42 H 1.09001 * 109.46202 * 65.82475 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2176 1.1111 0.0000 4 16 3.9376 0.7703 -0.0007 5 6 3.6620 -0.9655 -0.0003 6 7 4.5173 -1.9959 0.0046 7 6 4.0843 -3.2352 0.0000 8 7 2.7966 -3.5305 0.0007 9 6 1.8748 -2.5794 0.0009 10 7 0.5302 -2.9041 0.0021 11 6 0.1647 -3.6280 1.2263 12 6 -1.3502 -3.8420 1.2610 13 6 -1.7762 -4.6416 0.0266 14 6 -3.2973 -4.8066 0.0241 15 6 -3.7128 -5.6519 1.2005 16 1 -2.9665 -6.0336 1.8815 17 6 -5.0455 -5.9388 1.4067 18 7 -5.9541 -5.4743 0.5771 19 14 -5.5604 -6.9872 2.8645 20 1 -5.8237 -6.1122 4.0351 21 1 -6.7939 -7.7399 2.5217 22 1 -4.4732 -7.9430 3.1955 23 6 -1.3410 -3.8894 -1.2341 24 6 0.1737 -3.6740 -1.1965 25 6 2.2885 -1.2222 0.0010 26 1 -0.3634 -0.0973 1.0230 27 1 -0.3633 0.9346 -0.4273 28 1 -0.3633 -0.8373 -0.5959 29 1 1.7938 2.1045 0.0004 30 1 4.8046 -4.0399 0.0003 31 1 0.6685 -4.5944 1.2409 32 1 0.4694 -3.0467 2.0966 33 1 -1.8543 -2.8756 1.2605 34 1 -1.6193 -4.3930 2.1622 35 1 -1.3024 -5.6230 0.0470 36 1 -3.7692 -3.8266 0.0962 37 1 -3.6085 -5.2925 -0.9006 38 1 -6.8917 -5.6765 0.7221 39 1 -1.8450 -2.9237 -1.2740 40 1 -1.6036 -4.4742 -2.1157 41 1 0.4848 -3.1261 -2.0859 42 1 0.6774 -4.6403 -1.1706 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573679956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:53 Heat of formation + Delta-G solvation = 59.816134 kcal Electronic energy + Delta-G solvation = -24233.782040 eV Core-core repulsion = 20918.668670 eV Total energy + Delta-G solvation = -3315.113370 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.45461 -38.80463 -36.96929 -35.15045 -33.00918 -32.00156 -30.57208 -30.51781 -28.39901 -27.43215 -24.85594 -24.56334 -23.15956 -22.71681 -20.95672 -20.11776 -19.07343 -18.77079 -17.80033 -16.48017 -16.26636 -15.58520 -15.47264 -14.95821 -14.53309 -14.49421 -13.88046 -13.79928 -13.60455 -13.49704 -13.09005 -12.93744 -12.51964 -12.24469 -12.10216 -11.94404 -11.75509 -11.30643 -11.18511 -11.17205 -10.99821 -10.81471 -10.72573 -10.60169 -10.36048 -10.04943 -9.63104 -9.53836 -9.20951 -9.11071 -8.92330 -8.63122 -8.34327 -8.23798 -5.99472 -4.00970 0.19630 0.63758 0.90325 1.62388 1.95573 3.31296 3.38236 3.38942 3.41051 3.43853 3.95261 4.19084 4.30314 4.45972 4.55942 4.91019 5.13264 5.24630 5.27892 5.35991 5.40643 5.46938 5.60563 5.68591 5.72353 5.78077 5.79688 5.87646 6.01849 6.03544 6.10950 6.34113 6.37631 6.43725 6.57234 6.64103 6.81605 7.02486 7.06153 7.11987 7.19554 7.67989 7.80742 7.83130 8.00800 8.43653 9.05584 9.62842 11.11779 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.024367 B = 0.003039 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.827477 B = 9212.667193 C = 9634.313159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.040 4.040 3 C -0.219 4.219 4 S 0.148 5.852 5 C 0.091 3.909 6 N -0.501 5.501 7 C 0.322 3.678 8 N -0.552 5.552 9 C 0.415 3.585 10 N -0.486 5.486 11 C 0.063 3.937 12 C -0.098 4.098 13 C -0.082 4.082 14 C 0.029 3.971 15 C -0.516 4.516 16 H 0.055 0.945 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.110 4.110 24 C 0.064 3.936 25 C -0.155 4.155 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.176 0.824 30 H 0.202 0.798 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.017 0.983 37 H 0.015 0.985 38 H 0.260 0.740 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.238 12.239 -2.485 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.052 4.052 3 C -0.353 4.353 4 S 0.407 5.593 5 C -0.161 4.161 6 N -0.218 5.218 7 C 0.029 3.971 8 N -0.270 5.270 9 C 0.169 3.831 10 N -0.211 5.211 11 C -0.063 4.063 12 C -0.136 4.136 13 C -0.101 4.101 14 C -0.008 4.008 15 C -0.554 4.554 16 H 0.073 0.927 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.716 3.284 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.148 4.148 24 C -0.062 4.062 25 C -0.171 4.171 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.112 0.888 29 H 0.193 0.807 30 H 0.218 0.782 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.036 0.964 37 H 0.033 0.967 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 19.762 12.916 -2.522 23.742 hybrid contribution -1.579 -1.574 0.838 2.382 sum 18.183 11.342 -1.684 21.496 Atomic orbital electron populations 1.20672 0.87832 1.03418 1.03735 1.19534 0.98042 0.89134 0.98496 1.25051 0.95923 1.02681 1.11632 1.84168 1.04776 0.92877 1.77474 1.23929 0.91797 1.00089 1.00255 1.68060 1.38141 0.99210 1.16356 1.24782 0.90451 0.91852 0.90001 1.68554 1.03376 1.38194 1.16895 1.20241 0.90180 0.87210 0.85474 1.60132 1.08518 1.46952 1.05459 1.22297 0.99009 0.96156 0.88857 1.21581 0.90761 1.01055 1.00161 1.21266 1.00231 0.96733 0.91866 1.19103 0.87758 0.96989 0.96927 1.21248 0.91970 1.31511 1.10654 0.92686 1.25006 0.96916 0.96148 0.96339 1.69957 1.00998 1.45687 1.36863 0.86666 0.78100 0.80601 0.83066 1.20728 1.21322 1.19939 1.21724 0.92053 1.01398 0.99643 1.22201 0.98374 0.95906 0.89703 1.20357 0.93356 0.94958 1.08404 0.90525 0.91857 0.88784 0.80656 0.78188 0.93313 0.91651 0.91529 0.90249 0.92646 0.96441 0.96679 0.93081 0.91328 0.91453 0.91666 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.58 36.01 0.35 -0.68 16 2 C -0.04 -0.45 5.96 -103.82 -0.62 -1.07 16 3 C -0.22 -2.05 10.75 28.83 0.31 -1.74 16 4 S 0.15 1.47 23.23 -107.50 -2.50 -1.02 16 5 C 0.09 1.18 7.69 -16.09 -0.12 1.05 16 6 N -0.50 -6.59 10.47 -13.32 -0.14 -6.73 16 7 C 0.32 3.90 12.27 -92.33 -1.13 2.77 16 8 N -0.55 -7.68 9.86 -13.43 -0.13 -7.81 16 9 C 0.41 5.86 5.36 -154.57 -0.83 5.03 16 10 N -0.49 -6.88 2.54 -172.53 -0.44 -7.32 16 11 C 0.06 0.94 5.28 -3.84 -0.02 0.92 16 12 C -0.10 -1.69 5.15 -26.65 -0.14 -1.83 16 13 C -0.08 -1.57 2.20 -90.50 -0.20 -1.77 16 14 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 15 C -0.52 -13.91 8.45 -34.44 -0.29 -14.20 16 16 H 0.05 1.45 7.08 -52.49 -0.37 1.07 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 18 N -0.90 -26.35 13.29 55.43 0.74 -25.61 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.11 -1.76 5.38 -26.65 -0.14 -1.90 16 24 C 0.06 0.92 5.26 -3.83 -0.02 0.90 16 25 C -0.16 -2.07 6.06 -105.24 -0.64 -2.71 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 28 H 0.09 1.13 6.69 -51.93 -0.35 0.78 16 29 H 0.18 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.20 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 32 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.08 1.48 7.05 -51.93 -0.37 1.12 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 42 H 0.05 0.75 8.03 -51.93 -0.42 0.34 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -30.12 352.17 -12.03 -42.14 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -6.12 Total: -2.06 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -3.72 Total: -13.15 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: 0.03 Total: -47.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.50 Total: -1.02 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.12 -12.03 -42.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573679956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.960 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds