Wall clock time and date at job start Tue Mar 31 2020 11:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.31887 * 122.59517 * 2 1 4 4 S 1.75352 * 111.38624 * 180.02562 * 3 2 1 5 5 C 1.75751 * 92.18685 * 359.97438 * 4 3 2 6 6 N 1.33918 * 131.28435 * 180.28742 * 5 4 3 7 7 C 1.31270 * 121.04382 * 180.19657 * 6 5 4 8 8 N 1.32110 * 122.18105 * 359.47645 * 7 6 5 9 9 C 1.32452 * 121.18399 * 0.26250 * 8 7 6 10 10 N 1.38327 * 120.52745 * 180.02562 * 9 8 7 11 11 C 1.46839 * 111.00224 * 63.19239 * 10 9 8 12 12 C 1.53039 * 109.52524 * 174.16106 * 11 10 9 13 13 C 1.53120 * 109.27839 * 59.18005 * 12 11 10 14 14 C 1.52997 * 109.52355 * 182.44236 * 13 12 11 15 15 C 1.50701 * 109.46994 * 294.68182 * 14 13 12 16 16 H 1.08000 * 119.99774 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99789 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99946 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47172 * 90.00173 * 19 17 15 21 21 H 1.48503 * 109.46940 * 209.99960 * 19 17 15 22 22 H 1.48498 * 109.47401 * 329.99947 * 19 17 15 23 23 C 1.53123 * 109.15700 * 302.34636 * 13 12 11 24 24 C 1.46848 * 110.99748 * 298.98035 * 10 9 8 25 25 C 1.39729 * 109.61042 * 359.97438 * 5 4 3 26 26 H 1.09000 * 109.47351 * 264.56486 * 1 2 3 27 27 H 1.08995 * 109.46886 * 24.56905 * 1 2 3 28 28 H 1.09001 * 109.46770 * 144.56351 * 1 2 3 29 29 H 1.08001 * 124.30226 * 0.02562 * 3 2 1 30 30 H 1.08000 * 118.90589 * 179.76273 * 7 6 5 31 31 H 1.08999 * 109.46227 * 294.17979 * 11 10 9 32 32 H 1.08997 * 109.46363 * 54.14305 * 11 10 9 33 33 H 1.08994 * 109.50086 * 299.23641 * 12 11 10 34 34 H 1.09000 * 109.49984 * 179.11902 * 12 11 10 35 35 H 1.09004 * 109.52424 * 62.24492 * 13 12 11 36 36 H 1.09002 * 109.47256 * 54.68195 * 14 13 12 37 37 H 1.09001 * 109.47081 * 174.67824 * 14 13 12 38 38 H 0.96997 * 119.99667 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.50542 * 297.71404 * 23 13 12 40 40 H 1.09002 * 109.50362 * 177.59601 * 23 13 12 41 41 H 1.09000 * 109.46379 * 305.85534 * 24 10 9 42 42 H 1.09001 * 109.46202 * 65.82475 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2176 1.1111 0.0000 4 16 3.9376 0.7703 -0.0007 5 6 3.6620 -0.9655 -0.0003 6 7 4.5173 -1.9959 0.0046 7 6 4.0843 -3.2352 0.0000 8 7 2.7966 -3.5305 0.0007 9 6 1.8748 -2.5794 0.0009 10 7 0.5302 -2.9041 0.0021 11 6 0.1647 -3.6280 1.2263 12 6 -1.3502 -3.8420 1.2610 13 6 -1.7762 -4.6416 0.0266 14 6 -3.2973 -4.8066 0.0241 15 6 -3.7128 -5.6519 1.2005 16 1 -2.9665 -6.0336 1.8815 17 6 -5.0455 -5.9388 1.4067 18 7 -5.9541 -5.4743 0.5771 19 14 -5.5604 -6.9872 2.8645 20 1 -5.8237 -6.1122 4.0351 21 1 -6.7939 -7.7399 2.5217 22 1 -4.4732 -7.9430 3.1955 23 6 -1.3410 -3.8894 -1.2341 24 6 0.1737 -3.6740 -1.1965 25 6 2.2885 -1.2222 0.0010 26 1 -0.3634 -0.0973 1.0230 27 1 -0.3633 0.9346 -0.4273 28 1 -0.3633 -0.8373 -0.5959 29 1 1.7938 2.1045 0.0004 30 1 4.8046 -4.0399 0.0003 31 1 0.6685 -4.5944 1.2409 32 1 0.4694 -3.0467 2.0966 33 1 -1.8543 -2.8756 1.2605 34 1 -1.6193 -4.3930 2.1622 35 1 -1.3024 -5.6230 0.0470 36 1 -3.7692 -3.8266 0.0962 37 1 -3.6085 -5.2925 -0.9006 38 1 -6.8917 -5.6765 0.7221 39 1 -1.8450 -2.9237 -1.2740 40 1 -1.6036 -4.4742 -2.1157 41 1 0.4848 -3.1261 -2.0859 42 1 0.6774 -4.6403 -1.1706 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573679956.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:52 Heat of formation + Delta-G solvation = 45.521044 kcal Electronic energy + Delta-G solvation = -24234.401922 eV Core-core repulsion = 20918.668670 eV Total energy + Delta-G solvation = -3315.733252 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.42312 -40.04118 -37.81098 -36.60177 -34.67468 -33.38230 -31.88045 -31.56026 -29.73266 -28.63434 -26.26194 -25.63348 -24.45630 -24.05445 -22.49168 -21.01220 -20.46608 -19.69618 -18.89504 -18.35324 -17.34589 -16.64961 -16.61344 -16.35532 -15.85880 -15.64223 -15.16353 -15.01619 -14.73920 -14.63152 -14.30728 -14.17494 -13.81942 -13.63047 -13.29505 -13.08866 -13.07419 -12.84520 -12.65954 -12.52484 -12.26018 -12.12873 -12.10164 -11.96650 -11.82593 -11.56278 -11.27650 -10.95038 -10.79267 -10.49362 -10.44849 -10.07827 -9.77075 -9.04604 -8.14369 -6.22838 -0.69836 -0.35261 0.07134 0.82648 1.12666 1.41772 1.42167 1.52719 2.31900 2.44014 2.48465 3.08886 3.19288 3.23793 3.45310 3.62039 3.91002 3.97496 4.04035 4.14981 4.29943 4.44066 4.45771 4.50521 4.66943 4.71152 4.79075 4.80203 4.90389 4.94759 4.96533 5.01801 5.15456 5.25324 5.35576 5.39372 5.45602 5.57708 5.61418 5.69478 5.73997 5.86042 5.93527 6.06232 6.33667 6.86319 6.93544 7.45339 8.97289 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.024367 B = 0.003039 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.827477 B = 9212.667193 C = 9634.313159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.064 4.064 3 C -0.199 4.199 4 S 0.185 5.815 5 C 0.064 3.936 6 N -0.510 5.510 7 C 0.316 3.684 8 N -0.567 5.567 9 C 0.398 3.602 10 N -0.481 5.481 11 C 0.077 3.923 12 C -0.089 4.089 13 C -0.074 4.074 14 C 0.036 3.964 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.955 3.045 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.266 1.266 23 C -0.101 4.101 24 C 0.075 3.925 25 C -0.165 4.165 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.209 0.791 30 H 0.232 0.768 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.047 0.953 36 H -0.005 1.005 37 H -0.013 1.013 38 H 0.261 0.739 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.821 13.515 -1.914 24.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.076 4.076 3 C -0.333 4.333 4 S 0.444 5.556 5 C -0.187 4.187 6 N -0.227 5.227 7 C 0.024 3.976 8 N -0.286 5.286 9 C 0.152 3.848 10 N -0.205 5.205 11 C -0.050 4.050 12 C -0.126 4.126 13 C -0.093 4.093 14 C -0.001 4.001 15 C -0.566 4.566 16 H 0.077 0.923 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.780 3.220 20 H -0.199 1.199 21 H -0.211 1.211 22 H -0.190 1.190 23 C -0.139 4.139 24 C -0.051 4.051 25 C -0.181 4.181 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.226 0.774 30 H 0.248 0.752 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.013 0.987 37 H 0.006 0.994 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 21.370 14.197 -1.949 25.730 hybrid contribution -2.011 -1.874 0.627 2.819 sum 19.359 12.323 -1.322 22.987 Atomic orbital electron populations 1.20606 0.87533 1.03807 1.03190 1.19603 0.98373 0.89005 1.00590 1.25486 0.95569 1.03600 1.08632 1.84084 1.04905 0.90339 1.76229 1.24416 0.91959 1.01623 1.00711 1.68132 1.38365 0.99648 1.16548 1.25391 0.90383 0.92508 0.89341 1.68538 1.04142 1.38512 1.17405 1.20259 0.89829 0.87877 0.86798 1.60061 1.09332 1.46327 1.04762 1.22058 0.96788 0.96194 0.89934 1.21407 0.92648 1.00168 0.98416 1.21089 0.96382 0.97286 0.94532 1.18975 0.91313 0.94930 0.94869 1.21660 0.92284 1.31422 1.11251 0.92267 1.25877 0.97104 0.97516 0.99174 1.70087 1.01330 1.47203 1.38814 0.85596 0.77736 0.78987 0.79636 1.19882 1.21144 1.18989 1.21589 0.93515 1.00865 0.97945 1.22047 0.96568 0.95943 0.90541 1.20570 0.93979 0.95220 1.08343 0.91138 0.89708 0.90601 0.77370 0.75173 0.93989 0.90726 0.91830 0.91824 0.93463 0.98682 0.99437 0.93015 0.91260 0.91253 0.90259 0.93781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.80 9.58 71.24 0.68 -1.12 16 2 C -0.06 -1.32 5.96 -18.94 -0.11 -1.43 16 3 C -0.20 -3.08 10.75 66.99 0.72 -2.36 16 4 S 0.18 3.20 23.23 -56.49 -1.31 1.88 16 5 C 0.06 1.56 7.69 84.74 0.65 2.21 16 6 N -0.51 -12.71 10.47 -196.05 -2.05 -14.76 16 7 C 0.32 7.26 12.27 180.95 2.22 9.48 16 8 N -0.57 -15.29 9.86 -196.40 -1.94 -17.22 16 9 C 0.40 10.91 5.36 133.96 0.72 11.63 16 10 N -0.48 -13.34 2.54 -699.75 -1.78 -15.12 16 11 C 0.08 2.28 5.28 86.33 0.46 2.73 16 12 C -0.09 -3.11 5.15 30.65 0.16 -2.95 16 13 C -0.07 -2.90 2.20 -10.71 -0.02 -2.92 16 14 C 0.04 1.83 4.45 29.85 0.13 1.96 16 15 C -0.53 -29.08 8.45 25.60 0.22 -28.86 16 16 H 0.06 3.14 7.08 -2.91 -0.02 3.12 16 17 C 0.00 0.04 5.46 84.66 0.46 0.50 16 18 N -0.93 -56.15 13.29 21.45 0.28 -55.86 16 19 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 20 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 23 C -0.10 -3.25 5.38 30.65 0.16 -3.09 16 24 C 0.08 2.11 5.26 86.33 0.45 2.56 16 25 C -0.17 -4.18 6.06 -20.26 -0.12 -4.31 16 26 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.08 1.23 8.09 -2.39 -0.02 1.21 16 28 H 0.08 1.76 6.69 -2.39 -0.02 1.74 16 29 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.23 3.44 8.06 -2.91 -0.02 3.42 16 31 H 0.04 1.31 8.06 -2.39 -0.02 1.29 16 32 H 0.07 2.10 8.10 -2.39 -0.02 2.08 16 33 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.06 2.42 7.05 -2.39 -0.02 2.40 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.08 2.03 8.10 -2.39 -0.02 2.01 16 42 H 0.04 1.30 8.03 -2.39 -0.02 1.28 16 Total: -1.00 -65.65 352.17 3.03 -62.62 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.02 Total: 8.49 kcal Atomic # 6 Polarization: -22.74 SS G_CDS: 6.78 Total: -15.96 kcal Atomic # 7 Polarization: -97.48 SS G_CDS: -5.48 Total: -102.96 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.31 Total: 1.88 kcal Total: -65.65 3.03 -62.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573679956.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.141 kcal (2) G-P(sol) polarization free energy of solvation -65.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds