Wall clock time and date at job start Tue Mar 31 2020 11:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 115.56085 * 2 1 4 4 C 1.52998 * 117.49571 * 214.31263 * 2 1 3 5 5 H 1.09006 * 117.51510 * 145.03316 * 4 2 1 6 6 C 1.50694 * 117.50472 * 359.97438 * 4 2 1 7 7 O 1.20830 * 119.99550 * 51.83916 * 6 4 2 8 8 O 1.34224 * 120.00680 * 231.84211 * 6 4 2 9 9 C 1.52999 * 117.49901 * 145.69040 * 2 1 3 10 10 H 1.09002 * 117.51502 * 214.97173 * 9 2 1 11 11 C 1.50697 * 117.50007 * 0.02562 * 9 2 1 12 12 O 1.21286 * 120.00023 * 0.02562 * 11 9 2 13 13 N 1.34774 * 120.00356 * 180.02562 * 11 9 2 14 14 C 1.46494 * 120.00260 * 179.97438 * 13 11 9 15 15 C 1.50707 * 109.47360 * 180.02562 * 14 13 11 16 16 C 1.38630 * 119.75133 * 89.99780 * 15 14 13 17 17 C 1.37618 * 120.24819 * 180.02562 * 16 15 14 18 18 C 1.40711 * 119.74434 * 359.97438 * 17 16 15 19 19 C 1.41403 * 120.24620 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99765 * 328.85391 * 19 18 17 21 21 C 1.39941 * 120.00001 * 148.84449 * 19 18 17 22 22 N 1.30823 * 120.00562 * 335.13851 * 21 19 18 23 23 Si 1.86801 * 119.99564 * 155.13490 * 21 19 18 24 24 H 1.48498 * 109.47199 * 90.00450 * 23 21 19 25 25 H 1.48503 * 109.47132 * 210.00499 * 23 21 19 26 26 H 1.48506 * 109.47253 * 330.00154 * 23 21 19 27 27 C 1.40718 * 119.51445 * 0.28298 * 18 17 16 28 28 C 1.37622 * 119.74078 * 359.42051 * 27 18 17 29 29 H 1.09003 * 109.46984 * 278.15414 * 1 2 3 30 30 H 1.08993 * 109.47351 * 38.15681 * 1 2 3 31 31 H 1.09002 * 109.47124 * 158.15961 * 1 2 3 32 32 H 1.09001 * 109.46906 * 205.69133 * 3 2 1 33 33 H 1.09001 * 109.46708 * 325.68808 * 3 2 1 34 34 H 1.09000 * 109.46807 * 85.68736 * 3 2 1 35 35 H 0.96698 * 117.00296 * 180.02562 * 8 6 4 36 36 H 0.97003 * 119.99461 * 359.97438 * 13 11 9 37 37 H 1.09000 * 109.47524 * 59.99590 * 14 13 11 38 38 H 1.09007 * 109.47393 * 299.99448 * 14 13 11 39 39 H 1.08004 * 119.87485 * 0.02562 * 16 15 14 40 40 H 1.07996 * 120.12791 * 180.02562 * 17 16 15 41 41 H 0.96998 * 119.99411 * 354.01182 * 22 21 19 42 42 H 1.07997 * 120.12708 * 179.70656 * 27 18 17 43 43 H 1.07995 * 119.87423 * 180.32143 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7650 5 1 3.1717 -0.8755 -1.2683 6 6 1.3721 -2.1409 -1.4604 7 8 0.4956 -1.7798 -2.2097 8 8 1.5757 -3.4504 -1.2474 9 6 2.2365 -1.1210 0.7650 10 1 3.1717 -0.8755 1.2683 11 6 1.3721 -2.1410 1.4603 12 8 0.1639 -2.0542 1.3999 13 7 1.9416 -3.1497 2.1492 14 6 1.1013 -4.1409 2.8256 15 6 1.9770 -5.1533 3.5180 16 6 2.3759 -4.9365 4.8278 17 6 3.1759 -5.8540 5.4697 18 6 3.5885 -7.0158 4.7916 19 6 4.4101 -7.9658 5.4411 20 1 5.1171 -7.6448 6.1918 21 6 4.3071 -9.3219 5.1114 22 7 3.1936 -9.7902 4.6090 23 14 5.7596 -10.4634 5.3884 24 1 5.6793 -11.0445 6.7526 25 1 5.7297 -11.5555 4.3826 26 1 7.0244 -9.6976 5.2502 27 6 3.1820 -7.2228 3.4604 28 6 2.3769 -6.2947 2.8403 29 1 -0.3633 0.1458 1.0173 30 1 -0.3634 0.8080 -0.6349 31 1 -0.3633 -0.9539 -0.3823 32 1 3.1824 1.3084 -0.4455 33 1 1.5811 2.0742 -0.5793 34 1 2.2772 1.7413 1.0248 35 1 0.9964 -4.0667 -1.7161 36 1 2.9079 -3.2193 2.1972 37 1 0.4722 -4.6452 2.0921 38 1 0.4717 -3.6416 3.5622 39 1 2.0576 -4.0442 5.3465 40 1 3.4852 -5.6834 6.4903 41 1 2.4122 -9.2191 4.5457 42 1 3.4968 -8.1087 2.9290 43 1 2.0594 -6.4539 1.8204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576108334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:28 Heat of formation + Delta-G solvation = -100.361371 kcal Electronic energy + Delta-G solvation = -25997.317502 eV Core-core repulsion = 22200.212692 eV Total energy + Delta-G solvation = -3797.104810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.18662 -39.44671 -38.10600 -37.25244 -36.11383 -34.88183 -33.53676 -30.59876 -29.85657 -29.51240 -27.65782 -27.09997 -25.52647 -23.79491 -22.26027 -21.25466 -20.33198 -20.10706 -19.19414 -18.16059 -17.97995 -17.40727 -16.36252 -15.91204 -15.59128 -14.93840 -14.68538 -14.46834 -14.19387 -14.09501 -13.87279 -13.80333 -13.64555 -13.22597 -12.89168 -12.62026 -12.45792 -12.26131 -12.15645 -12.06900 -11.80430 -11.75947 -11.45625 -11.21591 -11.00153 -10.76282 -10.59931 -10.47075 -10.44855 -10.20756 -9.78037 -9.60634 -9.52066 -9.05399 -8.73466 -7.82470 -7.64978 -7.27592 -4.56791 2.00961 2.43675 2.45567 2.74218 2.75800 3.08946 3.13894 3.30069 3.32890 3.61546 3.95095 4.18362 4.34189 4.44021 4.58550 4.77790 4.98230 5.15730 5.25148 5.34901 5.35176 5.43396 5.65414 5.69162 5.75621 5.77681 5.89820 5.99081 6.06604 6.15461 6.19292 6.30921 6.47910 6.65176 6.74887 6.88299 6.99082 7.28059 7.48655 7.63669 7.71725 7.76616 7.79542 7.81767 8.09242 8.17841 8.40410 8.62363 8.76955 9.97411 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.002631 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.427310 B =10639.778438 C =11009.991351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.058 4.058 3 C -0.117 4.117 4 C -0.136 4.136 5 H 0.150 0.850 6 C 0.513 3.487 7 O -0.505 6.505 8 O -0.506 6.506 9 C -0.166 4.166 10 H 0.134 0.866 11 C 0.535 3.465 12 O -0.544 6.544 13 N -0.706 5.706 14 C 0.187 3.813 15 C -0.251 4.251 16 C -0.062 4.062 17 C -0.227 4.227 18 C 0.104 3.896 19 C -0.524 4.524 20 H 0.077 0.923 21 C 0.039 3.961 22 N -0.795 5.795 23 Si 1.066 2.934 24 H -0.277 1.277 25 H -0.273 1.273 26 H -0.275 1.275 27 C -0.215 4.215 28 C -0.061 4.061 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.412 0.588 36 H 0.401 0.599 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.298 0.702 42 H 0.102 0.898 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 14.701 -8.448 16.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.059 4.059 3 C -0.174 4.174 4 C -0.155 4.155 5 H 0.168 0.832 6 C 0.355 3.645 7 O -0.393 6.393 8 O -0.317 6.317 9 C -0.187 4.187 10 H 0.152 0.848 11 C 0.320 3.680 12 O -0.422 6.422 13 N -0.355 5.355 14 C 0.065 3.935 15 C -0.253 4.253 16 C -0.081 4.081 17 C -0.246 4.246 18 C 0.101 3.899 19 C -0.552 4.552 20 H 0.095 0.905 21 C -0.183 4.183 22 N -0.417 5.417 23 Si 0.889 3.111 24 H -0.202 1.202 25 H -0.198 1.198 26 H -0.200 1.200 27 C -0.235 4.235 28 C -0.080 4.080 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.271 0.729 36 H 0.235 0.765 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.120 0.880 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.668 13.515 -8.705 16.089 hybrid contribution -0.262 0.978 -0.012 1.013 sum 0.406 14.493 -8.717 16.918 Atomic orbital electron populations 1.21504 0.89847 1.03081 1.02380 1.21721 0.96775 0.90194 0.97203 1.21437 1.00120 0.92990 1.02857 1.22095 1.01996 0.98489 0.92921 0.83215 1.22142 0.81713 0.82107 0.78573 1.90709 1.31735 1.81274 1.35561 1.84559 1.61089 1.17652 1.68415 1.22657 1.02880 1.00600 0.92595 0.84772 1.19444 0.87976 0.81529 0.79037 1.90705 1.14314 1.75244 1.61968 1.46396 1.10935 1.26654 1.51537 1.19913 0.91492 0.87510 0.94537 1.18951 1.11489 0.98689 0.96176 1.20474 0.96820 0.97062 0.93749 1.21002 1.05785 0.99009 0.98846 1.17732 0.89136 0.92065 0.90984 1.20596 1.19599 0.93565 1.21413 0.90529 1.27017 1.01486 0.98112 0.91671 1.70429 1.01813 1.41002 1.28499 0.83635 0.74215 0.75416 0.77785 1.20233 1.19785 1.20017 1.21126 1.05908 1.01088 0.95329 1.20502 0.96527 0.93666 0.97346 0.91172 0.92831 0.90644 0.91841 0.91125 0.91107 0.72937 0.76485 0.92337 0.92377 0.89185 0.88745 0.88842 0.87955 0.89090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 7.56 37.16 0.28 -1.13 16 2 C -0.06 -0.60 2.70 -154.51 -0.42 -1.02 16 3 C -0.12 -0.82 9.85 37.16 0.37 -0.46 16 4 C -0.14 -1.41 5.88 -91.77 -0.54 -1.95 16 5 H 0.15 1.09 8.05 -51.93 -0.42 0.67 16 6 C 0.51 6.63 5.94 36.00 0.21 6.84 16 7 O -0.51 -7.73 16.14 -18.75 -0.30 -8.03 16 8 O -0.51 -6.02 12.88 -39.24 -0.51 -6.52 16 9 C -0.17 -1.79 5.91 -91.77 -0.54 -2.34 16 10 H 0.13 1.09 8.14 -51.93 -0.42 0.66 16 11 C 0.53 7.78 6.24 -10.99 -0.07 7.71 16 12 O -0.54 -9.53 12.95 5.55 0.07 -9.45 16 13 N -0.71 -10.42 5.55 -61.47 -0.34 -10.76 16 14 C 0.19 3.21 5.79 -5.19 -0.03 3.18 16 15 C -0.25 -4.94 5.27 -104.33 -0.55 -5.49 16 16 C -0.06 -1.27 9.67 -39.66 -0.38 -1.66 16 17 C -0.23 -5.22 9.80 -38.87 -0.38 -5.60 16 18 C 0.10 2.60 5.15 -106.82 -0.55 2.05 16 19 C -0.52 -13.34 8.96 -37.74 -0.34 -13.67 16 20 H 0.08 1.90 7.96 -52.49 -0.42 1.48 16 21 C 0.04 0.96 4.91 -17.34 -0.09 0.87 16 22 N -0.79 -20.53 12.53 55.55 0.70 -19.84 16 23 Si 1.07 20.83 30.00 -169.99 -5.10 15.73 16 24 H -0.28 -5.18 7.11 56.52 0.40 -4.78 16 25 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 27 C -0.22 -5.15 8.04 -38.87 -0.31 -5.47 16 28 C -0.06 -1.30 9.67 -39.66 -0.38 -1.68 16 29 H 0.07 0.94 7.50 -51.93 -0.39 0.55 16 30 H 0.05 0.59 7.99 -51.93 -0.41 0.18 16 31 H 0.07 1.17 4.49 -51.93 -0.23 0.94 16 32 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 33 H 0.07 0.46 7.97 -51.93 -0.41 0.05 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.41 3.43 9.10 45.56 0.41 3.85 16 36 H 0.40 5.44 8.46 -40.82 -0.35 5.09 16 37 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 38 H 0.06 1.01 8.08 -51.92 -0.42 0.59 16 39 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 40 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.30 7.93 6.93 -40.82 -0.28 7.64 16 42 H 0.10 2.56 6.94 -52.49 -0.36 2.19 16 43 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -30.19 362.61 -8.76 -38.95 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: -3.72 Total: -19.82 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 0.36 Total: -30.60 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.74 Total: -24.01 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.10 Total: 15.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.19 -8.76 -38.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576108334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.414 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds