Wall clock time and date at job start Tue Mar 31 2020 11:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 115.56085 * 2 1 4 4 C 1.52998 * 117.49571 * 214.31263 * 2 1 3 5 5 H 1.09006 * 117.51510 * 145.03316 * 4 2 1 6 6 C 1.50694 * 117.50472 * 359.97438 * 4 2 1 7 7 O 1.20830 * 119.99550 * 51.83916 * 6 4 2 8 8 O 1.34224 * 120.00680 * 231.84211 * 6 4 2 9 9 C 1.52999 * 117.49901 * 145.69040 * 2 1 3 10 10 H 1.09002 * 117.51502 * 214.97173 * 9 2 1 11 11 C 1.50697 * 117.50007 * 0.02562 * 9 2 1 12 12 O 1.21286 * 120.00023 * 0.02562 * 11 9 2 13 13 N 1.34774 * 120.00356 * 180.02562 * 11 9 2 14 14 C 1.46494 * 120.00260 * 179.97438 * 13 11 9 15 15 C 1.50707 * 109.47360 * 180.02562 * 14 13 11 16 16 C 1.38630 * 119.75133 * 89.99780 * 15 14 13 17 17 C 1.37618 * 120.24819 * 180.02562 * 16 15 14 18 18 C 1.40711 * 119.74434 * 359.97438 * 17 16 15 19 19 C 1.41403 * 120.24620 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99765 * 328.85391 * 19 18 17 21 21 C 1.39941 * 120.00001 * 148.84449 * 19 18 17 22 22 N 1.30823 * 120.00562 * 335.13851 * 21 19 18 23 23 Si 1.86801 * 119.99564 * 155.13490 * 21 19 18 24 24 H 1.48498 * 109.47199 * 90.00450 * 23 21 19 25 25 H 1.48503 * 109.47132 * 210.00499 * 23 21 19 26 26 H 1.48506 * 109.47253 * 330.00154 * 23 21 19 27 27 C 1.40718 * 119.51445 * 0.28298 * 18 17 16 28 28 C 1.37622 * 119.74078 * 359.42051 * 27 18 17 29 29 H 1.09003 * 109.46984 * 278.15414 * 1 2 3 30 30 H 1.08993 * 109.47351 * 38.15681 * 1 2 3 31 31 H 1.09002 * 109.47124 * 158.15961 * 1 2 3 32 32 H 1.09001 * 109.46906 * 205.69133 * 3 2 1 33 33 H 1.09001 * 109.46708 * 325.68808 * 3 2 1 34 34 H 1.09000 * 109.46807 * 85.68736 * 3 2 1 35 35 H 0.96698 * 117.00296 * 180.02562 * 8 6 4 36 36 H 0.97003 * 119.99461 * 359.97438 * 13 11 9 37 37 H 1.09000 * 109.47524 * 59.99590 * 14 13 11 38 38 H 1.09007 * 109.47393 * 299.99448 * 14 13 11 39 39 H 1.08004 * 119.87485 * 0.02562 * 16 15 14 40 40 H 1.07996 * 120.12791 * 180.02562 * 17 16 15 41 41 H 0.96998 * 119.99411 * 354.01182 * 22 21 19 42 42 H 1.07997 * 120.12708 * 179.70656 * 27 18 17 43 43 H 1.07995 * 119.87423 * 180.32143 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7650 5 1 3.1717 -0.8755 -1.2683 6 6 1.3721 -2.1409 -1.4604 7 8 0.4956 -1.7798 -2.2097 8 8 1.5757 -3.4504 -1.2474 9 6 2.2365 -1.1210 0.7650 10 1 3.1717 -0.8755 1.2683 11 6 1.3721 -2.1410 1.4603 12 8 0.1639 -2.0542 1.3999 13 7 1.9416 -3.1497 2.1492 14 6 1.1013 -4.1409 2.8256 15 6 1.9770 -5.1533 3.5180 16 6 2.3759 -4.9365 4.8278 17 6 3.1759 -5.8540 5.4697 18 6 3.5885 -7.0158 4.7916 19 6 4.4101 -7.9658 5.4411 20 1 5.1171 -7.6448 6.1918 21 6 4.3071 -9.3219 5.1114 22 7 3.1936 -9.7902 4.6090 23 14 5.7596 -10.4634 5.3884 24 1 5.6793 -11.0445 6.7526 25 1 5.7297 -11.5555 4.3826 26 1 7.0244 -9.6976 5.2502 27 6 3.1820 -7.2228 3.4604 28 6 2.3769 -6.2947 2.8403 29 1 -0.3633 0.1458 1.0173 30 1 -0.3634 0.8080 -0.6349 31 1 -0.3633 -0.9539 -0.3823 32 1 3.1824 1.3084 -0.4455 33 1 1.5811 2.0742 -0.5793 34 1 2.2772 1.7413 1.0248 35 1 0.9964 -4.0667 -1.7161 36 1 2.9079 -3.2193 2.1972 37 1 0.4722 -4.6452 2.0921 38 1 0.4717 -3.6416 3.5622 39 1 2.0576 -4.0442 5.3465 40 1 3.4852 -5.6834 6.4903 41 1 2.4122 -9.2191 4.5457 42 1 3.4968 -8.1087 2.9290 43 1 2.0594 -6.4539 1.8204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576108334.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:27 Heat of formation + Delta-G solvation = -118.735442 kcal Electronic energy + Delta-G solvation = -25998.114262 eV Core-core repulsion = 22200.212692 eV Total energy + Delta-G solvation = -3797.901570 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.15529 -40.59122 -39.73065 -38.31988 -37.12258 -36.43827 -35.11457 -32.11178 -31.35370 -30.75288 -28.61538 -28.43496 -26.70893 -25.28964 -23.37130 -23.03873 -21.98369 -21.18671 -20.10478 -19.80619 -19.16261 -18.41038 -17.36935 -17.01315 -16.89503 -16.46039 -16.28211 -15.75477 -15.66264 -15.39790 -15.16522 -14.80145 -14.55213 -14.45306 -14.17771 -13.98864 -13.78251 -13.74335 -13.43547 -13.28208 -12.90492 -12.86316 -12.70752 -12.63049 -12.31843 -12.24434 -11.97165 -11.71629 -11.55393 -11.35154 -11.32076 -11.05589 -10.88373 -10.65469 -10.02383 -9.62358 -9.45329 -9.15700 -6.48693 0.74598 0.93093 1.04241 1.41067 1.51044 1.60230 1.79944 1.89213 2.23137 2.33526 2.59068 2.74063 3.35334 3.47763 3.53366 3.71004 4.00310 4.07931 4.14154 4.19398 4.34932 4.37847 4.54902 4.59781 4.63388 4.75560 4.83726 4.84715 4.94594 5.04184 5.05768 5.09873 5.18112 5.27743 5.39990 5.44415 5.46755 5.56906 5.69401 5.78181 5.81431 6.03028 6.25443 6.36802 6.61197 6.76846 6.85625 6.92478 7.25345 8.05540 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023938 B = 0.002631 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.427310 B =10639.778438 C =11009.991351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.059 4.059 3 C -0.112 4.112 4 C -0.133 4.133 5 H 0.189 0.811 6 C 0.507 3.493 7 O -0.538 6.538 8 O -0.511 6.511 9 C -0.165 4.165 10 H 0.171 0.829 11 C 0.532 3.468 12 O -0.577 6.577 13 N -0.702 5.702 14 C 0.196 3.804 15 C -0.225 4.225 16 C -0.059 4.059 17 C -0.239 4.239 18 C 0.077 3.923 19 C -0.562 4.562 20 H 0.072 0.928 21 C 0.005 3.995 22 N -0.821 5.821 23 Si 1.116 2.884 24 H -0.262 1.262 25 H -0.272 1.272 26 H -0.263 1.263 27 C -0.229 4.229 28 C -0.063 4.063 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.423 0.577 36 H 0.410 0.590 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.281 0.719 42 H 0.083 0.917 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.516 16.918 -8.931 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.060 4.060 3 C -0.169 4.169 4 C -0.152 4.152 5 H 0.206 0.794 6 C 0.350 3.650 7 O -0.428 6.428 8 O -0.324 6.324 9 C -0.186 4.186 10 H 0.188 0.812 11 C 0.319 3.681 12 O -0.457 6.457 13 N -0.352 5.352 14 C 0.074 3.926 15 C -0.226 4.226 16 C -0.078 4.078 17 C -0.258 4.258 18 C 0.074 3.926 19 C -0.591 4.591 20 H 0.090 0.910 21 C -0.211 4.211 22 N -0.445 5.445 23 Si 0.933 3.067 24 H -0.186 1.186 25 H -0.196 1.196 26 H -0.187 1.187 27 C -0.248 4.248 28 C -0.082 4.082 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.284 0.716 36 H 0.246 0.754 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.138 0.862 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.122 15.747 -9.183 18.352 hybrid contribution -0.904 0.467 0.063 1.019 sum 1.218 16.214 -9.120 18.643 Atomic orbital electron populations 1.21411 0.92193 1.01628 1.01487 1.21853 0.95269 0.91992 0.96843 1.21476 1.01026 0.90571 1.03808 1.22400 1.02904 0.97464 0.92433 0.79377 1.22759 0.81484 0.82589 0.78144 1.90694 1.33163 1.81705 1.37199 1.84541 1.61470 1.17852 1.68558 1.22711 1.03584 0.99530 0.92753 0.81156 1.20069 0.87973 0.81651 0.78400 1.90710 1.16120 1.75990 1.62918 1.46163 1.11089 1.26343 1.51571 1.19672 0.91105 0.87411 0.94456 1.19207 1.09439 0.98204 0.95799 1.20759 0.95622 0.97436 0.93971 1.21187 1.06346 0.99014 0.99258 1.18033 0.89865 0.93054 0.91635 1.20764 1.20981 0.94524 1.22803 0.90986 1.28354 1.02898 0.99496 0.90358 1.70554 1.01978 1.40553 1.31376 0.83025 0.71542 0.73750 0.78362 1.18626 1.19624 1.18748 1.21067 1.07237 1.01246 0.95299 1.20709 0.95754 0.93458 0.98245 0.92463 0.91814 0.93858 0.89449 0.90777 0.90235 0.71631 0.75445 0.92861 0.92167 0.86209 0.88395 0.90710 0.89896 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.70 7.56 71.98 0.54 -2.15 16 2 C -0.06 -1.04 2.70 -52.18 -0.14 -1.18 16 3 C -0.11 -1.11 9.85 71.98 0.71 -0.40 16 4 C -0.13 -2.33 5.88 -11.54 -0.07 -2.40 16 5 H 0.19 1.80 8.05 -2.38 -0.02 1.78 16 6 C 0.51 12.39 5.94 71.23 0.42 12.82 16 7 O -0.54 -16.27 16.14 21.95 0.35 -15.92 16 8 O -0.51 -11.55 12.88 -51.35 -0.66 -12.21 16 9 C -0.17 -2.99 5.91 -11.54 -0.07 -3.05 16 10 H 0.17 1.86 8.14 -2.39 -0.02 1.84 16 11 C 0.53 14.29 6.24 87.66 0.55 14.84 16 12 O -0.58 -19.70 12.95 -3.05 -0.04 -19.74 16 13 N -0.70 -18.90 5.55 -466.78 -2.59 -21.49 16 14 C 0.20 6.32 5.79 85.64 0.50 6.81 16 15 C -0.22 -8.44 5.27 -19.67 -0.10 -8.55 16 16 C -0.06 -2.32 9.67 22.22 0.21 -2.10 16 17 C -0.24 -10.92 9.80 22.73 0.22 -10.70 16 18 C 0.08 3.92 5.15 -21.29 -0.11 3.81 16 19 C -0.56 -29.53 8.96 23.46 0.21 -29.32 16 20 H 0.07 3.70 7.96 -2.91 -0.02 3.67 16 21 C 0.00 0.23 4.91 85.26 0.42 0.65 16 22 N -0.82 -44.00 12.53 21.83 0.27 -43.73 16 23 Si 1.12 42.37 30.00 68.60 2.06 44.43 16 24 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 25 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 26 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 27 C -0.23 -11.20 8.04 22.73 0.18 -11.02 16 28 C -0.06 -2.62 9.67 22.22 0.21 -2.41 16 29 H 0.06 1.51 7.50 -2.39 -0.02 1.49 16 30 H 0.06 1.36 7.99 -2.39 -0.02 1.34 16 31 H 0.04 1.34 4.49 -2.39 -0.01 1.33 16 32 H 0.09 0.49 7.90 -2.39 -0.02 0.47 16 33 H 0.07 0.71 7.97 -2.39 -0.02 0.69 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.42 6.86 9.10 -74.06 -0.67 6.19 16 36 H 0.41 9.80 8.46 -92.71 -0.78 9.02 16 37 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 38 H 0.06 1.96 8.08 -2.38 -0.02 1.94 16 39 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 40 H 0.10 4.32 8.06 -2.91 -0.02 4.29 16 41 H 0.28 15.68 6.93 -92.71 -0.64 15.04 16 42 H 0.08 4.32 6.94 -2.91 -0.02 4.30 16 43 H 0.11 4.11 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -68.51 362.61 2.81 -65.70 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -0.28 Total: 37.29 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 3.69 Total: -34.34 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: -2.32 Total: -65.22 kcal Atomic # 8 Polarization: -47.51 SS G_CDS: -0.35 Total: -47.86 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.06 Total: 44.43 kcal Total: -68.51 2.81 -65.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576108334.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.032 kcal (2) G-P(sol) polarization free energy of solvation -68.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds