Wall clock time and date at job start Tue Mar 31 2020 12:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46996 * 2 1 4 4 C 1.50700 * 109.47154 * 240.00085 * 2 1 3 5 5 H 1.08002 * 119.99488 * 239.99492 * 4 2 1 6 6 C 1.37877 * 120.00314 * 60.00215 * 4 2 1 7 7 N 1.31516 * 119.99421 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47006 * 59.99975 * 8 6 4 10 10 H 1.48501 * 109.46791 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46766 * 299.99760 * 8 6 4 12 12 C 1.53002 * 109.46934 * 119.99961 * 2 1 3 13 13 S 1.81405 * 109.47034 * 300.00120 * 12 2 1 14 14 C 1.76195 * 102.99833 * 179.97438 * 13 12 2 15 15 N 1.31257 * 125.62067 * 0.02942 * 14 13 12 16 16 N 1.40434 * 106.75393 * 179.72781 * 15 14 13 17 17 H 0.97005 * 126.75672 * 180.29260 * 16 15 14 18 18 C 1.34349 * 106.48413 * 0.40025 * 16 15 14 19 19 C 1.50701 * 125.88264 * 179.85521 * 18 16 15 20 20 C 1.50706 * 109.46576 * 124.71718 * 19 18 16 21 21 C 1.38237 * 119.99761 * 90.00463 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00191 * 269.97564 * 20 19 18 26 26 N 1.30868 * 108.22614 * 359.59652 * 18 16 15 27 27 H 1.08997 * 109.47540 * 299.99763 * 1 2 3 28 28 H 1.09002 * 109.46852 * 60.00392 * 1 2 3 29 29 H 1.09002 * 109.46841 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47055 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46889 * 300.00249 * 3 2 1 32 32 H 1.08997 * 109.46783 * 59.99773 * 3 2 1 33 33 H 0.97002 * 119.99224 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.46922 * 180.02562 * 12 2 1 35 35 H 1.08993 * 109.46846 * 60.00008 * 12 2 1 36 36 H 1.09003 * 109.47370 * 4.71984 * 19 18 16 37 37 H 1.09000 * 109.47021 * 244.71438 * 19 18 16 38 38 H 1.08005 * 120.00088 * 359.96779 * 21 20 19 39 39 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 42 42 H 1.07999 * 119.99990 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1313 6 6 1.6994 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3227 -1.1196 -4.0079 9 1 1.8282 -2.5198 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1189 -4.0076 12 6 2.0400 -0.7213 1.2493 13 16 1.4352 0.1339 2.7304 14 6 2.1118 -0.8242 4.0452 15 7 2.8654 -1.8898 3.9054 16 7 3.1850 -2.3322 5.1994 17 1 3.7331 -3.0979 5.4322 18 6 2.5803 -1.4874 6.0513 19 6 2.6327 -1.5622 7.5555 20 6 3.1302 -0.2506 8.1065 21 6 2.2323 0.7531 8.4184 22 6 2.6887 1.9559 8.9243 23 6 4.0427 2.1546 9.1192 24 6 4.9409 1.1527 8.8028 25 6 4.4843 -0.0516 8.3005 26 7 1.9426 -0.5854 5.3497 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.7083 1.1608 -3.4844 34 1 3.1300 -0.7209 1.2495 35 1 1.6767 -1.7488 1.2492 36 1 3.3088 -2.3625 7.8563 37 1 1.6346 -1.7643 7.9442 38 1 1.1743 0.5976 8.2668 39 1 1.9873 2.7403 9.1676 40 1 4.3991 3.0942 9.5149 41 1 5.9991 1.3095 8.9509 42 1 5.1857 -0.8358 8.0568 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580214506.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:49 Heat of formation + Delta-G solvation = 94.737003 kcal Electronic energy + Delta-G solvation = -22906.646095 eV Core-core repulsion = 19593.047007 eV Total energy + Delta-G solvation = -3313.599088 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.93888 -39.37807 -35.96359 -34.11432 -32.42868 -31.52654 -31.07910 -30.70082 -27.37216 -26.11657 -25.63520 -25.10057 -23.00598 -22.69925 -22.15976 -20.60146 -19.00803 -18.00570 -17.01583 -16.09021 -15.91054 -15.86586 -15.37689 -15.10364 -14.73147 -14.55209 -13.75729 -13.61728 -13.48096 -13.23125 -12.90388 -12.77160 -12.52344 -12.14682 -11.89016 -11.43463 -11.34154 -11.22847 -11.19768 -10.85671 -10.74148 -10.39789 -10.27809 -10.26507 -10.07034 -9.70619 -9.66128 -9.50784 -9.42746 -9.09233 -8.96338 -8.62428 -8.36149 -7.07431 -5.98424 -4.09444 1.07228 1.23329 1.63179 1.73834 2.64053 2.91329 3.19503 3.31109 3.35785 3.39201 3.59515 4.14491 4.41812 4.49854 4.52874 4.80232 4.81200 4.92283 5.16699 5.21228 5.27566 5.32594 5.44805 5.75278 5.84727 5.96278 6.03615 6.16480 6.24493 6.32570 6.35052 6.37938 6.56188 6.79073 6.84347 6.96399 7.04787 7.10228 7.11764 7.39689 7.62995 7.73339 8.06112 8.06597 8.17920 8.41368 8.89322 9.55550 11.02690 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.002602 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.310489 B =10757.497171 C =11096.737399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.083 3.917 3 C -0.136 4.136 4 C -0.505 4.505 5 H 0.056 0.944 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.278 1.278 12 C -0.078 4.078 13 S 0.007 5.993 14 C 0.212 3.788 15 N -0.319 5.319 16 N -0.485 5.485 17 H 0.436 0.564 18 C 0.286 3.714 19 C 0.002 3.998 20 C -0.082 4.082 21 C -0.088 4.088 22 C -0.120 4.120 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.112 4.112 26 N -0.509 5.509 27 H 0.019 0.981 28 H 0.087 0.913 29 H 0.028 0.972 30 H 0.027 0.973 31 H 0.087 0.913 32 H 0.019 0.981 33 H 0.261 0.739 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.127 0.873 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 -2.237 23.693 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.081 3.919 3 C -0.194 4.194 4 C -0.545 4.545 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.227 4.227 13 S 0.235 5.765 14 C -0.176 4.176 15 N -0.152 5.152 16 N -0.204 5.204 17 H 0.280 0.720 18 C 0.005 3.995 19 C -0.038 4.038 20 C -0.083 4.083 21 C -0.106 4.106 22 C -0.138 4.138 23 C -0.136 4.136 24 C -0.141 4.141 25 C -0.130 4.130 26 N -0.239 5.239 27 H 0.038 0.962 28 H 0.106 0.894 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.843 -1.175 23.043 23.390 hybrid contribution 1.681 -2.237 -0.602 2.862 sum 5.524 -3.411 22.440 23.361 Atomic orbital electron populations 1.21915 0.97278 0.99449 1.00763 1.18016 0.93016 0.92506 0.88372 1.21909 0.98657 0.98055 1.00749 1.20965 1.31727 1.12151 0.89684 0.92590 1.24873 0.94879 0.94939 0.98708 1.69808 1.36389 1.22620 1.23373 0.86629 0.79185 0.79758 0.82246 1.20321 1.21239 1.20318 1.24182 1.03263 1.02060 0.93175 1.85870 1.62966 1.34741 0.92900 1.26758 0.97936 0.95905 0.97012 1.78511 1.22728 1.16024 0.97951 1.47896 1.41826 1.26274 1.04369 0.71961 1.24135 0.92279 0.88127 0.94970 1.19086 1.04233 0.96373 0.84065 1.19393 0.93653 0.95206 1.00025 1.21064 0.99896 0.92768 0.96842 1.21173 0.95755 0.97317 0.99517 1.21185 0.93542 0.98950 0.99899 1.21086 0.99623 0.93623 0.99779 1.20997 0.94678 0.97789 0.99583 1.70541 1.26032 1.25989 1.01339 0.96219 0.89441 0.95315 0.95341 0.89444 0.96238 0.92859 0.90596 0.90565 0.88709 0.87307 0.85504 0.85862 0.86145 0.86145 0.86401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.01 37.16 0.30 -2.97 16 2 C 0.08 2.02 0.52 -155.66 -0.08 1.94 16 3 C -0.14 -3.27 8.01 37.16 0.30 -2.97 16 4 C -0.51 -13.49 8.01 -34.44 -0.28 -13.77 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.81 5.15 -17.82 -0.09 1.72 16 7 N -0.88 -24.06 9.35 55.43 0.52 -23.54 16 8 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C -0.08 -1.71 4.50 37.16 0.17 -1.54 16 13 S 0.01 0.13 19.22 -107.50 -2.07 -1.93 16 14 C 0.21 4.05 8.28 -90.96 -0.75 3.30 16 15 N -0.32 -5.76 12.36 30.13 0.37 -5.38 16 16 N -0.48 -6.31 7.43 32.61 0.24 -6.07 16 17 H 0.44 3.78 8.96 -182.34 -1.63 2.14 16 18 C 0.29 3.69 7.49 -155.74 -1.17 2.52 16 19 C 0.00 0.02 5.97 -29.03 -0.17 -0.16 16 20 C -0.08 -0.78 5.09 -104.62 -0.53 -1.32 16 21 C -0.09 -0.87 9.70 -39.58 -0.38 -1.26 16 22 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 23 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 25 C -0.11 -1.03 9.70 -39.58 -0.38 -1.41 16 26 N -0.51 -8.66 11.17 -10.96 -0.12 -8.79 16 27 H 0.02 0.43 6.91 -51.93 -0.36 0.07 16 28 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 32 H 0.02 0.43 6.91 -51.93 -0.36 0.07 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 35 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 36 H 0.09 0.46 8.09 -51.93 -0.42 0.04 16 37 H 0.11 0.73 8.09 -51.93 -0.42 0.31 16 38 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 360.98 15.07 5.44 5.44 Total: -1.00 -31.42 360.98 -12.08 -43.49 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.17 Total: 1.23 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -4.27 Total: -20.35 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: 1.01 Total: -43.79 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.07 Total: -1.93 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.42 -12.08 -43.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580214506.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.231 kcal (2) G-P(sol) polarization free energy of solvation -31.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds