Wall clock time and date at job start Tue Mar 31 2020 12:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46996 * 2 1 4 4 C 1.50700 * 109.47154 * 240.00085 * 2 1 3 5 5 H 1.08002 * 119.99488 * 239.99492 * 4 2 1 6 6 C 1.37877 * 120.00314 * 60.00215 * 4 2 1 7 7 N 1.31516 * 119.99421 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99995 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47006 * 59.99975 * 8 6 4 10 10 H 1.48501 * 109.46791 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.46766 * 299.99760 * 8 6 4 12 12 C 1.53002 * 109.46934 * 119.99961 * 2 1 3 13 13 S 1.81405 * 109.47034 * 300.00120 * 12 2 1 14 14 C 1.76195 * 102.99833 * 179.97438 * 13 12 2 15 15 N 1.31257 * 125.62067 * 0.02942 * 14 13 12 16 16 N 1.40434 * 106.75393 * 179.72781 * 15 14 13 17 17 H 0.97005 * 126.75672 * 180.29260 * 16 15 14 18 18 C 1.34349 * 106.48413 * 0.40025 * 16 15 14 19 19 C 1.50701 * 125.88264 * 179.85521 * 18 16 15 20 20 C 1.50706 * 109.46576 * 124.71718 * 19 18 16 21 21 C 1.38237 * 119.99761 * 90.00463 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.97438 * 21 20 19 23 23 C 1.38234 * 120.00220 * 359.94731 * 22 21 20 24 24 C 1.38233 * 120.00037 * 0.28719 * 23 22 21 25 25 C 1.38234 * 120.00191 * 269.97564 * 20 19 18 26 26 N 1.30868 * 108.22614 * 359.59652 * 18 16 15 27 27 H 1.08997 * 109.47540 * 299.99763 * 1 2 3 28 28 H 1.09002 * 109.46852 * 60.00392 * 1 2 3 29 29 H 1.09002 * 109.46841 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47055 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46889 * 300.00249 * 3 2 1 32 32 H 1.08997 * 109.46783 * 59.99773 * 3 2 1 33 33 H 0.97002 * 119.99224 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.46922 * 180.02562 * 12 2 1 35 35 H 1.08993 * 109.46846 * 60.00008 * 12 2 1 36 36 H 1.09003 * 109.47370 * 4.71984 * 19 18 16 37 37 H 1.09000 * 109.47021 * 244.71438 * 19 18 16 38 38 H 1.08005 * 120.00088 * 359.96779 * 21 20 19 39 39 H 1.07999 * 119.99770 * 179.97438 * 22 21 20 40 40 H 1.08002 * 119.99744 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.00395 * 179.72811 * 24 23 22 42 42 H 1.07999 * 119.99990 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5884 -1.1313 6 6 1.6994 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3227 -1.1196 -4.0079 9 1 1.8282 -2.5198 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1189 -4.0076 12 6 2.0400 -0.7213 1.2493 13 16 1.4352 0.1339 2.7304 14 6 2.1118 -0.8242 4.0452 15 7 2.8654 -1.8898 3.9054 16 7 3.1850 -2.3322 5.1994 17 1 3.7331 -3.0979 5.4322 18 6 2.5803 -1.4874 6.0513 19 6 2.6327 -1.5622 7.5555 20 6 3.1302 -0.2506 8.1065 21 6 2.2323 0.7531 8.4184 22 6 2.6887 1.9559 8.9243 23 6 4.0427 2.1546 9.1192 24 6 4.9409 1.1527 8.8028 25 6 4.4843 -0.0516 8.3005 26 7 1.9426 -0.5854 5.3497 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 0.7083 1.1608 -3.4844 34 1 3.1300 -0.7209 1.2495 35 1 1.6767 -1.7488 1.2492 36 1 3.3088 -2.3625 7.8563 37 1 1.6346 -1.7643 7.9442 38 1 1.1743 0.5976 8.2668 39 1 1.9873 2.7403 9.1676 40 1 4.3991 3.0942 9.5149 41 1 5.9991 1.3095 8.9509 42 1 5.1857 -0.8358 8.0568 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580214506.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:48 Heat of formation + Delta-G solvation = 79.134451 kcal Electronic energy + Delta-G solvation = -22907.322673 eV Core-core repulsion = 19593.047007 eV Total energy + Delta-G solvation = -3314.275665 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.12831 -40.03869 -37.89822 -34.92758 -33.64542 -33.50979 -31.76740 -31.71059 -28.36842 -27.73311 -27.59018 -27.14658 -24.22614 -23.41758 -23.03007 -21.56451 -20.86374 -19.18921 -17.97558 -17.69868 -17.41250 -16.87506 -16.67659 -16.08110 -15.93171 -15.75699 -15.32261 -15.04967 -14.52478 -14.24824 -14.13745 -13.96019 -13.69583 -13.31133 -13.27632 -13.15422 -12.90966 -12.70734 -12.59647 -12.25131 -12.10475 -12.05310 -11.84085 -11.73453 -11.65127 -11.44460 -11.34215 -11.15882 -10.84868 -10.53649 -10.39184 -9.76257 -9.65279 -8.62205 -8.01243 -6.18769 0.25153 0.32142 0.51814 0.56825 1.27951 1.45226 1.46064 1.53181 1.66269 1.94471 2.46660 2.88297 3.21741 3.27885 3.73931 3.87236 4.02189 4.19386 4.22995 4.30568 4.32798 4.41243 4.57618 4.67891 4.70674 4.80933 4.85181 4.93763 5.03411 5.08439 5.14275 5.16858 5.20133 5.20717 5.43694 5.59224 5.64449 5.66531 5.67231 5.69075 6.08872 6.10663 6.17991 6.18603 6.40353 6.84421 6.86897 7.48611 8.98011 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.024876 B = 0.002602 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.310489 B =10757.497171 C =11096.737399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.076 3.924 3 C -0.125 4.125 4 C -0.527 4.527 5 H 0.049 0.951 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.950 3.050 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.275 1.275 12 C -0.065 4.065 13 S 0.004 5.996 14 C 0.195 3.805 15 N -0.346 5.346 16 N -0.468 5.468 17 H 0.456 0.544 18 C 0.303 3.697 19 C 0.006 3.994 20 C -0.094 4.094 21 C -0.105 4.105 22 C -0.134 4.134 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.121 4.121 26 N -0.538 5.538 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.025 0.975 30 H 0.023 0.977 31 H 0.065 0.935 32 H 0.033 0.967 33 H 0.262 0.738 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 -3.253 25.465 26.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.074 3.926 3 C -0.183 4.183 4 C -0.566 4.566 5 H 0.067 0.933 6 C -0.173 4.173 7 N -0.540 5.540 8 Si 0.776 3.224 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.201 1.201 12 C -0.214 4.214 13 S 0.232 5.768 14 C -0.194 4.194 15 N -0.181 5.181 16 N -0.189 5.189 17 H 0.305 0.695 18 C 0.023 3.977 19 C -0.033 4.033 20 C -0.095 4.095 21 C -0.123 4.123 22 C -0.152 4.152 23 C -0.145 4.145 24 C -0.153 4.153 25 C -0.139 4.139 26 N -0.269 5.269 27 H 0.053 0.947 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.154 0.846 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.152 0.848 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.833 -2.219 24.832 25.396 hybrid contribution 1.429 -1.938 -0.961 2.592 sum 6.262 -4.157 23.872 25.027 Atomic orbital electron populations 1.21769 0.97185 0.99074 1.00369 1.18001 0.93091 0.92563 0.88901 1.21761 0.98247 0.97989 1.00334 1.21247 1.31997 1.12310 0.91071 0.93269 1.25518 0.95073 0.95581 1.01094 1.69928 1.36854 1.23372 1.23816 0.85748 0.78636 0.78771 0.79253 1.20053 1.20815 1.20083 1.23791 1.02508 1.01489 0.93635 1.85622 1.63509 1.35075 0.92597 1.26459 0.99032 0.96480 0.97460 1.78387 1.22868 1.15980 1.00835 1.47788 1.41530 1.26766 1.02803 0.69507 1.24925 0.89915 0.86293 0.96560 1.19402 1.06468 0.97102 0.80368 1.19562 0.93911 0.95671 1.00362 1.21262 1.00239 0.93387 0.97441 1.21431 0.96454 0.97653 0.99673 1.21486 0.93490 0.99829 0.99691 1.21418 1.00664 0.93665 0.99517 1.21312 0.94918 0.98444 0.99249 1.70503 1.27769 1.27959 1.00633 0.94731 0.91594 0.95609 0.95735 0.91586 0.94801 0.92893 0.91446 0.91293 0.84600 0.85499 0.85498 0.84762 0.84487 0.84438 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.01 71.98 0.58 -5.54 16 2 C 0.08 3.76 0.52 -52.92 -0.03 3.74 16 3 C -0.13 -6.10 8.01 71.98 0.58 -5.53 16 4 C -0.53 -28.43 8.01 25.60 0.21 -28.23 16 5 H 0.05 2.65 7.74 -2.91 -0.02 2.63 16 6 C 0.03 1.47 5.15 84.65 0.44 1.90 16 7 N -0.90 -49.59 9.35 21.45 0.20 -49.39 16 8 Si 0.95 42.98 29.54 68.60 2.03 45.00 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 C -0.07 -2.88 4.50 71.98 0.32 -2.56 16 13 S 0.00 0.14 19.22 -56.49 -1.09 -0.94 16 14 C 0.20 7.32 8.28 180.47 1.49 8.81 16 15 N -0.35 -12.14 12.36 -58.59 -0.72 -12.86 16 16 N -0.47 -11.04 7.43 -50.73 -0.38 -11.41 16 17 H 0.46 6.45 8.96 -213.10 -1.91 4.54 16 18 C 0.30 7.07 7.49 138.24 1.03 8.11 16 19 C 0.01 0.08 5.97 29.10 0.17 0.25 16 20 C -0.09 -1.58 5.09 -19.86 -0.10 -1.68 16 21 C -0.11 -1.96 9.70 22.27 0.22 -1.74 16 22 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 23 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 24 C -0.13 -2.12 10.05 22.27 0.22 -1.90 16 25 C -0.12 -1.91 9.70 22.27 0.22 -1.69 16 26 N -0.54 -17.61 11.17 -188.58 -2.11 -19.71 16 27 H 0.03 1.53 6.91 -2.39 -0.02 1.51 16 28 H 0.07 3.48 6.07 -2.39 -0.01 3.47 16 29 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 3.50 6.07 -2.39 -0.01 3.48 16 32 H 0.03 1.50 6.91 -2.39 -0.02 1.49 16 33 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 34 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 35 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 36 H 0.14 0.64 8.09 -2.39 -0.02 0.62 16 37 H 0.13 1.26 8.09 -2.39 -0.02 1.24 16 38 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 40 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 41 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 42 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -67.94 360.98 2.85 -65.09 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -0.88 Total: 14.25 kcal Atomic # 6 Polarization: -35.82 SS G_CDS: 5.80 Total: -30.03 kcal Atomic # 7 Polarization: -90.37 SS G_CDS: -3.01 Total: -93.38 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -1.09 Total: -0.94 kcal Total: -67.94 2.85 -65.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580214506.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.228 kcal (2) G-P(sol) polarization free energy of solvation -67.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds