Wall clock time and date at job start Tue Mar 31 2020 12:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47024 * 2 1 4 4 C 1.50706 * 109.47390 * 239.99694 * 2 1 3 5 5 H 1.07995 * 119.99775 * 239.99732 * 4 2 1 6 6 C 1.37875 * 119.99709 * 59.99772 * 4 2 1 7 7 N 1.31517 * 120.00163 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00070 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46882 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47160 * 119.99768 * 8 6 4 11 11 H 1.48498 * 109.47298 * 240.00458 * 8 6 4 12 12 C 1.53000 * 109.47229 * 119.99722 * 2 1 3 13 13 S 1.80998 * 109.47317 * 299.99978 * 12 2 1 14 14 C 1.76196 * 100.00403 * 179.97438 * 13 12 2 15 15 N 1.31268 * 125.80239 * 0.02562 * 14 13 12 16 16 C 1.34361 * 109.30856 * 179.77144 * 15 14 13 17 17 C 1.34385 * 108.34430 * 0.37598 * 16 15 14 18 18 N 1.36108 * 125.80664 * 180.02562 * 14 13 12 19 19 C 1.46504 * 126.50200 * 359.97438 * 18 14 13 20 20 C 1.50700 * 109.47263 * 85.00021 * 19 18 14 21 21 C 1.38225 * 119.61699 * 124.72866 * 20 19 18 22 22 C 1.38633 * 119.15742 * 179.75505 * 21 20 19 23 23 C 1.38669 * 118.42098 * 0.51217 * 22 21 20 24 24 C 1.38186 * 119.16399 * 359.72881 * 23 22 21 25 25 N 1.31855 * 119.61789 * 305.00181 * 20 19 18 26 26 H 1.08998 * 109.46974 * 300.00116 * 1 2 3 27 27 H 1.08991 * 109.47066 * 60.00435 * 1 2 3 28 28 H 1.08999 * 109.46900 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47372 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47195 * 299.99226 * 3 2 1 31 31 H 1.08998 * 109.47340 * 60.00108 * 3 2 1 32 32 H 0.96998 * 119.99951 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47299 * 180.02562 * 12 2 1 34 34 H 1.08999 * 109.47498 * 59.99976 * 12 2 1 35 35 H 1.07998 * 125.82721 * 180.27483 * 16 15 14 36 36 H 1.08002 * 126.52427 * 179.90293 * 17 16 15 37 37 H 1.09004 * 109.47567 * 205.00479 * 19 18 14 38 38 H 1.09002 * 109.46650 * 325.00400 * 19 18 14 39 39 H 1.08003 * 120.42080 * 359.97438 * 21 20 19 40 40 H 1.08000 * 120.78444 * 180.26422 * 22 21 20 41 41 H 1.08004 * 120.41591 * 179.70827 * 23 22 21 42 42 H 1.07992 * 119.61527 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1455 -2.2878 -3.6037 10 1 1.1661 -1.5869 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 6 2.0400 -0.7212 1.2493 13 16 1.4367 0.1321 2.7271 14 6 2.1521 -0.8808 3.9788 15 7 2.9008 -1.9396 3.7751 16 6 3.2714 -2.4561 4.9588 17 6 2.7336 -1.7052 5.9349 18 7 2.0223 -0.6986 5.3214 19 6 1.2691 0.3670 5.9874 20 6 -0.1776 -0.0382 6.1047 21 6 -0.7870 -0.0440 7.3453 22 6 -2.1197 -0.4134 7.4415 23 6 -2.7896 -0.7752 6.2825 24 6 -2.1130 -0.7502 5.0779 25 7 -0.8460 -0.3883 5.0233 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7095 1.1616 -3.4844 33 1 3.1301 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2494 35 1 3.8938 -3.3271 5.1014 36 1 2.8426 -1.8592 6.9983 37 1 1.6810 0.5359 6.9825 38 1 1.3434 1.2842 5.4031 39 1 -0.2329 0.2392 8.2281 40 1 -2.6231 -0.4231 8.3970 41 1 -3.8271 -1.0731 6.3209 42 1 -2.6277 -1.0301 4.1708 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582857406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:45 Heat of formation + Delta-G solvation = 95.060459 kcal Electronic energy + Delta-G solvation = -23798.219328 eV Core-core repulsion = 20484.634267 eV Total energy + Delta-G solvation = -3313.585062 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54932 -40.21531 -35.87644 -34.64215 -32.59311 -31.46543 -31.25312 -29.29775 -26.93160 -26.03164 -25.56716 -25.02794 -23.74084 -22.62733 -21.22834 -20.92568 -18.84513 -17.70564 -17.07718 -16.36547 -15.97765 -15.85764 -15.19697 -14.80213 -14.61190 -14.30131 -13.87723 -13.66905 -13.55329 -13.30370 -13.10405 -12.97633 -12.59813 -12.45726 -12.01923 -11.95837 -11.30832 -11.14763 -10.79211 -10.60095 -10.21347 -10.10608 -10.09582 -9.82767 -9.72538 -9.64769 -9.45578 -9.31138 -9.28521 -9.24798 -8.84488 -8.53039 -8.28845 -6.64166 -5.91705 -4.01498 0.79406 1.07660 2.00155 2.20951 2.99341 3.24638 3.33642 3.41930 3.42881 3.47785 3.67779 3.98548 4.33244 4.48642 4.64179 4.67231 4.85779 4.91193 5.03312 5.11352 5.31824 5.34541 5.47943 5.50319 5.79554 5.85491 5.91566 6.25486 6.31493 6.42467 6.44802 6.71483 6.96182 6.99715 7.04540 7.15231 7.16580 7.19923 7.47791 7.70338 7.80993 7.86246 8.13599 8.25779 8.28831 8.50127 8.98297 9.63212 11.09430 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.003633 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.770889 B = 7705.309389 C = 8605.371020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.079 3.921 3 C -0.133 4.133 4 C -0.500 4.500 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C -0.066 4.066 13 S -0.016 6.016 14 C 0.223 3.777 15 N -0.499 5.499 16 C -0.017 4.017 17 C -0.072 4.072 18 N -0.448 5.448 19 C 0.161 3.839 20 C 0.101 3.899 21 C -0.162 4.162 22 C -0.078 4.078 23 C -0.171 4.171 24 C 0.108 3.892 25 N -0.444 5.444 26 H 0.018 0.982 27 H 0.084 0.916 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.085 0.915 31 H 0.015 0.985 32 H 0.258 0.742 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.848 -0.137 22.192 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.077 3.923 3 C -0.191 4.191 4 C -0.540 4.540 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.215 4.215 13 S 0.217 5.783 14 C -0.146 4.146 15 N -0.221 5.221 16 C -0.166 4.166 17 C -0.206 4.206 18 N -0.135 5.135 19 C 0.037 3.963 20 C -0.038 4.038 21 C -0.183 4.183 22 C -0.105 4.105 23 C -0.191 4.191 24 C -0.049 4.049 25 N -0.152 5.152 26 H 0.037 0.963 27 H 0.102 0.898 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.034 0.966 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.182 0.818 36 H 0.186 0.814 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.013 0.743 20.645 21.258 hybrid contribution 0.412 -1.483 0.927 1.797 sum -4.601 -0.740 21.572 22.070 Atomic orbital electron populations 1.21864 0.97378 0.99299 1.00444 1.18049 0.92954 0.92385 0.88930 1.21890 0.98595 0.98231 1.00434 1.21084 1.31192 1.11981 0.89700 0.92421 1.24875 0.94972 0.94972 0.98698 1.69833 1.36854 1.22797 1.22965 0.86535 0.78611 0.79767 0.83095 1.19780 1.21106 1.21106 1.23979 1.03098 1.01800 0.92615 1.85640 1.63437 1.33950 0.95305 1.25932 1.02133 0.99912 0.86672 1.70911 1.15748 1.08627 1.26828 1.22216 1.04276 1.01801 0.88357 1.22578 1.04536 0.94280 0.99213 1.45372 1.39339 1.23138 1.05653 1.20600 0.85888 0.90285 0.99495 1.21366 0.95954 0.97057 0.89402 1.21886 0.96129 1.02131 0.98115 1.21532 0.94123 0.95838 0.98962 1.22247 1.01634 1.01319 0.93872 1.22931 0.89979 0.94141 0.97869 1.67661 1.08456 1.08174 1.30906 0.96334 0.89753 0.95451 0.95403 0.89612 0.96564 0.93143 0.90628 0.90471 0.81780 0.81427 0.87541 0.87171 0.84863 0.84812 0.84694 0.82260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.22 8.01 37.16 0.30 -2.92 16 2 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 3 C -0.13 -3.25 8.01 37.16 0.30 -2.95 16 4 C -0.50 -13.66 8.01 -34.44 -0.28 -13.94 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.89 -24.43 9.35 55.43 0.52 -23.91 16 8 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C -0.07 -1.51 4.14 37.16 0.15 -1.36 16 13 S -0.02 -0.31 18.42 -107.50 -1.98 -2.29 16 14 C 0.22 4.19 7.80 -88.75 -0.69 3.50 16 15 N -0.50 -9.93 10.60 -13.45 -0.14 -10.07 16 16 C -0.02 -0.27 11.84 -17.81 -0.21 -0.48 16 17 C -0.07 -0.98 11.60 -16.28 -0.19 -1.16 16 18 N -0.45 -6.69 2.75 -118.21 -0.33 -7.01 16 19 C 0.16 1.82 6.30 -5.19 -0.03 1.79 16 20 C 0.10 1.20 6.39 -82.59 -0.53 0.67 16 21 C -0.16 -1.41 9.71 -39.44 -0.38 -1.79 16 22 C -0.08 -0.62 10.18 -39.28 -0.40 -1.02 16 23 C -0.17 -1.50 10.11 -39.44 -0.40 -1.90 16 24 C 0.11 1.27 11.18 -17.55 -0.20 1.08 16 25 N -0.44 -6.33 9.69 -9.48 -0.09 -6.42 16 26 H 0.02 0.41 6.91 -51.93 -0.36 0.05 16 27 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 31 H 0.02 0.35 6.91 -51.93 -0.36 -0.01 16 32 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.08 1.78 8.14 -51.91 -0.42 1.36 16 34 H 0.08 1.84 8.14 -51.92 -0.42 1.42 16 35 H 0.16 2.12 8.06 -52.49 -0.42 1.70 16 36 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 0.78 7.87 -51.93 -0.41 0.37 16 38 H 0.11 1.28 7.90 -51.93 -0.41 0.87 16 39 H 0.13 0.76 7.95 -52.48 -0.42 0.34 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 42 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -32.35 359.23 -10.29 -42.64 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.93 Total: 2.27 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -2.73 Total: -16.92 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: -0.04 Total: -47.41 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -1.98 Total: -2.29 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.35 -10.29 -42.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582857406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.704 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds