Wall clock time and date at job start Tue Mar 31 2020 12:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47024 * 2 1 4 4 C 1.50706 * 109.47390 * 239.99694 * 2 1 3 5 5 H 1.07995 * 119.99775 * 239.99732 * 4 2 1 6 6 C 1.37875 * 119.99709 * 59.99772 * 4 2 1 7 7 N 1.31517 * 120.00163 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00070 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46882 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47160 * 119.99768 * 8 6 4 11 11 H 1.48498 * 109.47298 * 240.00458 * 8 6 4 12 12 C 1.53000 * 109.47229 * 119.99722 * 2 1 3 13 13 S 1.80998 * 109.47317 * 299.99978 * 12 2 1 14 14 C 1.76196 * 100.00403 * 179.97438 * 13 12 2 15 15 N 1.31268 * 125.80239 * 0.02562 * 14 13 12 16 16 C 1.34361 * 109.30856 * 179.77144 * 15 14 13 17 17 C 1.34385 * 108.34430 * 0.37598 * 16 15 14 18 18 N 1.36108 * 125.80664 * 180.02562 * 14 13 12 19 19 C 1.46504 * 126.50200 * 359.97438 * 18 14 13 20 20 C 1.50700 * 109.47263 * 85.00021 * 19 18 14 21 21 C 1.38225 * 119.61699 * 124.72866 * 20 19 18 22 22 C 1.38633 * 119.15742 * 179.75505 * 21 20 19 23 23 C 1.38669 * 118.42098 * 0.51217 * 22 21 20 24 24 C 1.38186 * 119.16399 * 359.72881 * 23 22 21 25 25 N 1.31855 * 119.61789 * 305.00181 * 20 19 18 26 26 H 1.08998 * 109.46974 * 300.00116 * 1 2 3 27 27 H 1.08991 * 109.47066 * 60.00435 * 1 2 3 28 28 H 1.08999 * 109.46900 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47372 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47195 * 299.99226 * 3 2 1 31 31 H 1.08998 * 109.47340 * 60.00108 * 3 2 1 32 32 H 0.96998 * 119.99951 * 179.97438 * 7 6 4 33 33 H 1.09004 * 109.47299 * 180.02562 * 12 2 1 34 34 H 1.08999 * 109.47498 * 59.99976 * 12 2 1 35 35 H 1.07998 * 125.82721 * 180.27483 * 16 15 14 36 36 H 1.08002 * 126.52427 * 179.90293 * 17 16 15 37 37 H 1.09004 * 109.47567 * 205.00479 * 19 18 14 38 38 H 1.09002 * 109.46650 * 325.00400 * 19 18 14 39 39 H 1.08003 * 120.42080 * 359.97438 * 21 20 19 40 40 H 1.08000 * 120.78444 * 180.26422 * 22 21 20 41 41 H 1.08004 * 120.41591 * 179.70827 * 23 22 21 42 42 H 1.07992 * 119.61527 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1205 -4.0079 9 1 3.1455 -2.2878 -3.6037 10 1 1.1661 -1.5869 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 6 2.0400 -0.7212 1.2493 13 16 1.4367 0.1321 2.7271 14 6 2.1521 -0.8808 3.9788 15 7 2.9008 -1.9396 3.7751 16 6 3.2714 -2.4561 4.9588 17 6 2.7336 -1.7052 5.9349 18 7 2.0223 -0.6986 5.3214 19 6 1.2691 0.3670 5.9874 20 6 -0.1776 -0.0382 6.1047 21 6 -0.7870 -0.0440 7.3453 22 6 -2.1197 -0.4134 7.4415 23 6 -2.7896 -0.7752 6.2825 24 6 -2.1130 -0.7502 5.0779 25 7 -0.8460 -0.3883 5.0233 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 0.7095 1.1616 -3.4844 33 1 3.1301 -0.7208 1.2495 34 1 1.6767 -1.7489 1.2494 35 1 3.8938 -3.3271 5.1014 36 1 2.8426 -1.8592 6.9983 37 1 1.6810 0.5359 6.9825 38 1 1.3434 1.2842 5.4031 39 1 -0.2329 0.2392 8.2281 40 1 -2.6231 -0.4231 8.3970 41 1 -3.8271 -1.0731 6.3209 42 1 -2.6277 -1.0301 4.1708 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582857406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:44 Heat of formation + Delta-G solvation = 77.803886 kcal Electronic energy + Delta-G solvation = -23798.967630 eV Core-core repulsion = 20484.634267 eV Total energy + Delta-G solvation = -3314.333363 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.71961 -40.98558 -37.87843 -35.62834 -33.52369 -33.31259 -32.19283 -30.50854 -27.93870 -27.80262 -27.58753 -27.14877 -24.46257 -23.48637 -22.46375 -22.08971 -20.74002 -18.83834 -17.94506 -17.84244 -17.20572 -16.74453 -16.68413 -16.44816 -15.79881 -15.46681 -15.28946 -14.98957 -14.84237 -14.53740 -14.31866 -14.17555 -13.89992 -13.75663 -13.37122 -13.26525 -13.14606 -12.73042 -12.66883 -12.52615 -12.24040 -12.08803 -11.55963 -11.47226 -11.28549 -10.96485 -10.82956 -10.78152 -10.53223 -10.41304 -10.19724 -10.09574 -10.01234 -8.10785 -8.00788 -6.17582 0.06597 0.39686 0.57829 1.02798 1.41926 1.43809 1.50346 1.56499 2.04168 2.16115 2.47398 2.91109 3.21670 3.24012 3.61801 3.96130 3.98192 4.08865 4.21689 4.26940 4.31592 4.35048 4.39647 4.47871 4.65842 4.70509 4.74818 4.83132 5.00263 5.04648 5.14527 5.17958 5.20370 5.25774 5.31034 5.44444 5.64974 5.67090 5.78144 5.79734 6.05790 6.09834 6.19661 6.42680 6.85400 7.04678 7.11623 7.49407 8.98709 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017901 B = 0.003633 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.770889 B = 7705.309389 C = 8605.371020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.073 3.927 3 C -0.121 4.121 4 C -0.525 4.525 5 H 0.044 0.956 6 C 0.027 3.973 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.279 1.279 12 C -0.056 4.056 13 S -0.002 6.002 14 C 0.188 3.812 15 N -0.541 5.541 16 C -0.053 4.053 17 C -0.038 4.038 18 N -0.439 5.439 19 C 0.153 3.847 20 C 0.075 3.925 21 C -0.149 4.149 22 C -0.077 4.077 23 C -0.164 4.164 24 C 0.076 3.924 25 N -0.493 5.493 26 H 0.032 0.968 27 H 0.064 0.936 28 H 0.018 0.982 29 H 0.022 0.978 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.185 0.815 36 H 0.221 0.779 37 H 0.156 0.844 38 H 0.099 0.901 39 H 0.172 0.828 40 H 0.171 0.829 41 H 0.160 0.840 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.225 -0.053 25.867 26.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.071 3.929 3 C -0.179 4.179 4 C -0.564 4.564 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.540 5.540 8 Si 0.776 3.224 9 H -0.200 1.200 10 H -0.205 1.205 11 H -0.204 1.204 12 C -0.205 4.205 13 S 0.230 5.770 14 C -0.183 4.183 15 N -0.265 5.265 16 C -0.202 4.202 17 C -0.172 4.172 18 N -0.125 5.125 19 C 0.031 3.969 20 C -0.064 4.064 21 C -0.169 4.169 22 C -0.103 4.103 23 C -0.183 4.183 24 C -0.081 4.081 25 N -0.203 5.203 26 H 0.051 0.949 27 H 0.083 0.917 28 H 0.037 0.963 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.202 0.798 36 H 0.238 0.762 37 H 0.173 0.827 38 H 0.117 0.883 39 H 0.189 0.811 40 H 0.189 0.811 41 H 0.178 0.822 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.409 0.847 24.325 24.934 hybrid contribution 0.500 -1.548 -0.002 1.626 sum -4.909 -0.700 24.323 24.823 Atomic orbital electron populations 1.21676 0.97187 0.98588 1.00070 1.18039 0.93042 0.92610 0.89224 1.21716 0.98111 0.97857 1.00188 1.21311 1.31698 1.12095 0.91332 0.93818 1.25504 0.95089 0.95620 1.01008 1.69936 1.37065 1.23375 1.23609 0.85643 0.78176 0.78691 0.79932 1.20019 1.20498 1.20433 1.23528 1.01821 1.00837 0.94338 1.85232 1.63898 1.33844 0.93990 1.25479 1.04037 1.00642 0.88100 1.70785 1.16523 1.09523 1.29633 1.22736 1.06058 1.03521 0.87855 1.23366 1.01070 0.91808 1.00976 1.45616 1.38695 1.23784 1.04394 1.21027 0.85993 0.88598 1.01278 1.21526 0.96058 0.98565 0.90234 1.22260 0.96578 1.00146 0.97927 1.22023 0.93995 0.94321 0.99963 1.22519 1.02684 0.99975 0.93158 1.23025 0.89964 0.95914 0.99217 1.67508 1.09813 1.09850 1.33087 0.94881 0.91734 0.96264 0.95896 0.91628 0.94859 0.92934 0.92320 0.92611 0.79760 0.76237 0.82653 0.88315 0.81087 0.81132 0.82217 0.83016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.94 8.01 71.98 0.58 -5.37 16 2 C 0.07 3.76 0.52 -52.93 -0.03 3.74 16 3 C -0.12 -6.06 8.01 71.98 0.58 -5.48 16 4 C -0.52 -29.81 8.01 25.60 0.21 -29.61 16 5 H 0.04 2.54 7.74 -2.91 -0.02 2.51 16 6 C 0.03 1.52 5.15 84.65 0.44 1.96 16 7 N -0.90 -50.70 9.35 21.45 0.20 -50.50 16 8 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 9 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 11 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 12 C -0.06 -2.69 4.14 71.98 0.30 -2.40 16 13 S 0.00 -0.07 18.42 -56.49 -1.04 -1.11 16 14 C 0.19 7.10 7.80 179.70 1.40 8.50 16 15 N -0.54 -21.94 10.60 -196.47 -2.08 -24.03 16 16 C -0.05 -1.63 11.84 83.42 0.99 -0.64 16 17 C -0.04 -0.89 11.60 82.89 0.96 0.07 16 18 N -0.44 -12.28 2.75 -527.90 -1.45 -13.74 16 19 C 0.15 3.04 6.30 85.63 0.54 3.58 16 20 C 0.07 1.60 6.39 42.55 0.27 1.87 16 21 C -0.15 -1.96 9.71 22.36 0.22 -1.74 16 22 C -0.08 -0.90 10.18 22.47 0.23 -0.67 16 23 C -0.16 -2.52 10.11 22.36 0.23 -2.29 16 24 C 0.08 1.78 11.18 84.67 0.95 2.73 16 25 N -0.49 -13.98 9.69 -183.89 -1.78 -15.77 16 26 H 0.03 1.53 6.91 -2.39 -0.02 1.51 16 27 H 0.06 3.52 6.07 -2.39 -0.01 3.51 16 28 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 3.56 6.07 -2.39 -0.01 3.54 16 31 H 0.03 1.51 6.91 -2.39 -0.02 1.49 16 32 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 33 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.06 2.84 8.14 -2.40 -0.02 2.82 16 35 H 0.19 4.54 8.06 -2.91 -0.02 4.51 16 36 H 0.22 2.75 8.06 -2.91 -0.02 2.73 16 37 H 0.16 1.46 7.87 -2.39 -0.02 1.44 16 38 H 0.10 2.17 7.90 -2.39 -0.02 2.15 16 39 H 0.17 0.86 7.95 -2.91 -0.02 0.84 16 40 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 41 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 42 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -74.53 359.23 4.73 -69.80 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 1.01 Total: 14.51 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 7.85 Total: -25.74 kcal Atomic # 7 Polarization: -98.91 SS G_CDS: -5.12 Total: -104.02 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.04 Total: -1.11 kcal Total: -74.53 4.73 -69.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582857406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.607 kcal (2) G-P(sol) polarization free energy of solvation -74.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds