Wall clock time and date at job start Tue Mar 31 2020 12:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.50698 * 109.46644 * 240.00429 * 2 1 3 5 5 H 1.08010 * 119.99765 * 239.99771 * 4 2 1 6 6 C 1.37872 * 120.00736 * 59.99818 * 4 2 1 7 7 N 1.31523 * 119.99548 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00627 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47294 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47394 * 119.99957 * 8 6 4 11 11 H 1.48499 * 109.47384 * 240.00136 * 8 6 4 12 12 C 1.52993 * 109.47206 * 120.00339 * 2 1 3 13 13 N 1.46905 * 109.47039 * 299.99787 * 12 2 1 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 12 16 16 C 1.38230 * 120.01094 * 259.71829 * 15 14 13 17 17 C 1.38226 * 120.09022 * 179.74469 * 16 15 14 18 18 C 1.38297 * 120.12744 * 0.55896 * 17 16 15 19 19 C 1.38293 * 120.03122 * 359.69776 * 18 17 16 20 20 F 1.35098 * 120.04880 * 180.02562 * 19 18 17 21 21 C 1.38617 * 120.01983 * 79.99839 * 15 14 13 22 22 O 1.35955 * 120.06192 * 359.95361 * 21 15 14 23 23 C 1.42898 * 117.00071 * 89.99905 * 22 21 15 24 24 F 1.39905 * 109.47042 * 300.00316 * 23 22 21 25 25 F 1.39905 * 109.47014 * 59.99811 * 23 22 21 26 26 H 1.08999 * 109.47049 * 299.99976 * 1 2 3 27 27 H 1.09005 * 109.47151 * 59.99619 * 1 2 3 28 28 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.46963 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47384 * 300.00238 * 3 2 1 31 31 H 1.08999 * 109.47105 * 60.00059 * 3 2 1 32 32 H 0.97002 * 119.99722 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47393 * 180.02562 * 12 2 1 34 34 H 1.08998 * 109.47408 * 59.99713 * 12 2 1 35 35 H 1.00901 * 110.99869 * 56.04956 * 13 12 2 36 36 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 37 37 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 38 38 H 1.07997 * 119.95488 * 0.02562 * 16 15 14 39 39 H 1.08001 * 119.93181 * 180.27642 * 17 16 15 40 40 H 1.08000 * 119.98520 * 179.72114 * 18 17 16 41 41 H 1.09001 * 109.47402 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3222 -1.1194 -4.0080 9 1 3.1472 -2.2863 -3.6040 10 1 1.1675 -1.5865 -4.8166 11 1 3.1470 -0.1856 -4.8162 12 6 2.0400 -0.7213 1.2491 13 7 1.5504 -0.0288 2.4486 14 6 2.0219 -0.6946 3.6702 15 6 1.5003 0.0419 4.8771 16 6 2.3210 0.9209 5.5587 17 6 1.8427 1.6013 6.6627 18 6 0.5454 1.3964 7.0959 19 6 -0.2785 0.5143 6.4210 20 9 -1.5460 0.3143 6.8436 21 6 0.1992 -0.1660 5.3076 22 8 -0.6081 -1.0337 4.6414 23 6 -0.5937 -2.3956 5.0737 24 9 0.7003 -2.9119 4.9453 25 9 -0.9922 -2.4640 6.4131 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7079 1.1609 -3.4844 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.5438 0.0412 2.4402 36 1 1.6587 -1.7223 3.6872 37 1 3.1117 -0.6941 3.6868 38 1 3.3360 1.0796 5.2255 39 1 2.4847 2.2908 7.1907 40 1 0.1754 1.9259 7.9614 41 1 -1.2799 -2.9790 4.4598 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594946226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:25 Heat of formation + Delta-G solvation = -168.755301 kcal Electronic energy + Delta-G solvation = -27584.844150 eV Core-core repulsion = 23242.916816 eV Total energy + Delta-G solvation = -4341.927334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.34694 -49.00104 -47.43100 -40.09274 -37.57611 -36.85059 -34.19583 -31.68670 -30.28281 -30.05389 -26.37566 -25.65378 -25.52719 -25.16210 -23.20042 -22.68888 -21.51444 -19.22009 -18.47275 -18.37962 -18.05346 -17.28441 -16.71170 -16.16230 -15.87589 -15.63401 -15.16649 -14.84866 -14.57691 -14.29589 -14.08853 -14.01635 -13.77068 -13.58434 -13.43822 -12.87956 -12.60813 -12.52568 -12.37524 -12.13637 -12.00795 -11.80405 -11.67101 -11.12499 -10.99114 -10.89170 -10.61214 -10.52854 -10.15705 -10.05372 -9.37054 -9.17481 -8.98579 -8.84387 -8.59185 -8.27856 -7.69485 -5.89898 -4.00312 0.68369 0.95620 2.66799 3.30944 3.36351 3.39039 3.39486 3.42837 3.94323 4.31226 4.42481 4.45286 4.53616 4.67103 4.94280 5.01524 5.10387 5.19095 5.35615 5.54354 5.70270 5.77862 5.93420 6.05318 6.20550 6.31747 6.33795 6.42561 6.73741 6.86704 6.91187 7.10177 7.19292 7.40137 7.47744 7.71277 7.77914 7.84053 7.96705 8.22892 8.36242 8.57177 9.01312 9.64676 11.10609 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.003470 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.195241 B = 8067.310176 C = 8586.322057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 C -0.119 4.119 4 C -0.505 4.505 5 H 0.052 0.948 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.285 1.285 12 C 0.076 3.924 13 N -0.678 5.678 14 C 0.083 3.917 15 C -0.037 4.037 16 C -0.106 4.106 17 C -0.082 4.082 18 C -0.155 4.155 19 C 0.101 3.899 20 F -0.129 7.129 21 C 0.033 3.967 22 O -0.318 6.318 23 C 0.404 3.596 24 F -0.198 7.198 25 F -0.203 7.203 26 H 0.011 0.989 27 H 0.083 0.917 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.074 0.926 31 H 0.020 0.980 32 H 0.257 0.743 33 H 0.057 0.943 34 H 0.014 0.986 35 H 0.342 0.658 36 H 0.051 0.949 37 H 0.080 0.920 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.254 -2.091 19.694 19.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.068 3.932 3 C -0.176 4.176 4 C -0.544 4.544 5 H 0.070 0.930 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.052 4.052 13 N -0.311 5.311 14 C -0.046 4.046 15 C -0.038 4.038 16 C -0.125 4.125 17 C -0.100 4.100 18 C -0.174 4.174 19 C 0.082 3.918 20 F -0.107 7.107 21 C -0.011 4.011 22 O -0.237 6.237 23 C 0.314 3.686 24 F -0.180 7.180 25 F -0.185 7.185 26 H 0.030 0.970 27 H 0.102 0.898 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.092 0.908 31 H 0.039 0.961 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.162 0.838 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.157 0.843 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.970 -1.524 19.428 19.512 hybrid contribution -0.360 -1.418 -0.561 1.567 sum -1.330 -2.942 18.867 19.141 Atomic orbital electron populations 1.21826 0.98461 0.98352 1.00312 1.18099 0.92161 0.93078 0.89864 1.21634 0.97730 0.98188 1.00095 1.21140 1.31050 1.11772 0.90444 0.92954 1.24885 0.95074 0.94950 0.98680 1.69854 1.36868 1.22805 1.22771 0.86608 0.78589 0.79715 0.83455 1.19967 1.21199 1.21129 1.22176 0.98945 0.94453 0.89612 1.60706 1.16938 1.53143 1.00297 1.21097 1.00462 0.95483 0.87577 1.20186 0.90890 0.96418 0.96298 1.21107 1.00681 0.95642 0.95031 1.21129 0.94547 0.98246 0.96046 1.21064 0.94578 0.99968 1.01825 1.17958 0.80488 0.99306 0.94081 1.91514 1.36224 1.93846 1.89160 1.18436 0.91196 0.96732 0.94708 1.86759 1.62923 1.17009 1.56991 1.23680 0.81646 0.83354 0.79884 1.93040 1.42567 1.86869 1.95506 1.93088 1.90576 1.95913 1.38914 0.97023 0.89842 0.96247 0.96316 0.90768 0.96112 0.93268 0.92471 0.96795 0.83806 0.93152 0.90131 0.84262 0.84411 0.84177 0.80598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 7.92 37.16 0.29 -2.84 16 2 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 3 C -0.12 -2.90 8.09 37.16 0.30 -2.60 16 4 C -0.51 -13.54 8.01 -34.44 -0.28 -13.82 16 5 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 6 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -24.48 9.35 55.43 0.52 -23.96 16 8 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 C 0.08 1.58 4.59 -3.82 -0.02 1.57 16 13 N -0.68 -12.26 5.70 -115.06 -0.66 -12.91 16 14 C 0.08 1.24 5.42 -4.98 -0.03 1.21 16 15 C -0.04 -0.50 5.25 -104.49 -0.55 -1.05 16 16 C -0.11 -1.19 9.66 -39.59 -0.38 -1.57 16 17 C -0.08 -0.77 10.04 -39.56 -0.40 -1.17 16 18 C -0.16 -1.61 10.02 -39.54 -0.40 -2.01 16 19 C 0.10 1.33 7.03 -39.30 -0.28 1.05 16 20 F -0.13 -1.78 16.78 2.25 0.04 -1.74 16 21 C 0.03 0.47 5.31 -39.18 -0.21 0.26 16 22 O -0.32 -4.41 9.52 -19.60 -0.19 -4.60 16 23 C 0.40 4.51 6.34 101.05 0.64 5.15 16 24 F -0.20 -2.47 14.39 2.25 0.03 -2.44 16 25 F -0.20 -2.47 16.65 2.25 0.04 -2.44 16 26 H 0.01 0.24 6.57 -51.93 -0.34 -0.10 16 27 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 1.99 6.07 -51.93 -0.32 1.67 16 31 H 0.02 0.46 7.60 -51.93 -0.39 0.07 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.34 6.42 6.71 -39.29 -0.26 6.16 16 36 H 0.05 0.76 5.09 -51.93 -0.26 0.50 16 37 H 0.08 1.13 8.00 -51.93 -0.42 0.72 16 38 H 0.14 1.34 8.03 -52.49 -0.42 0.92 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.18 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 343.68 15.07 5.18 5.18 Total: -1.00 -29.55 343.68 -6.76 -36.31 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.23 Total: 3.15 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -1.47 Total: -12.58 kcal Atomic # 7 Polarization: -36.73 SS G_CDS: -0.14 Total: -36.87 kcal Atomic # 8 Polarization: -4.41 SS G_CDS: -0.19 Total: -4.60 kcal Atomic # 9 Polarization: -6.72 SS G_CDS: 0.11 Total: -6.61 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.55 -6.76 -36.31 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594946226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.441 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds