Wall clock time and date at job start Tue Mar 31 2020 12:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47190 * 2 1 4 4 C 1.50698 * 109.46644 * 240.00429 * 2 1 3 5 5 H 1.08010 * 119.99765 * 239.99771 * 4 2 1 6 6 C 1.37872 * 120.00736 * 59.99818 * 4 2 1 7 7 N 1.31523 * 119.99548 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00627 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47294 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47394 * 119.99957 * 8 6 4 11 11 H 1.48499 * 109.47384 * 240.00136 * 8 6 4 12 12 C 1.52993 * 109.47206 * 120.00339 * 2 1 3 13 13 N 1.46905 * 109.47039 * 299.99787 * 12 2 1 14 14 C 1.46901 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.46943 * 180.02562 * 14 13 12 16 16 C 1.38230 * 120.01094 * 259.71829 * 15 14 13 17 17 C 1.38226 * 120.09022 * 179.74469 * 16 15 14 18 18 C 1.38297 * 120.12744 * 0.55896 * 17 16 15 19 19 C 1.38293 * 120.03122 * 359.69776 * 18 17 16 20 20 F 1.35098 * 120.04880 * 180.02562 * 19 18 17 21 21 C 1.38617 * 120.01983 * 79.99839 * 15 14 13 22 22 O 1.35955 * 120.06192 * 359.95361 * 21 15 14 23 23 C 1.42898 * 117.00071 * 89.99905 * 22 21 15 24 24 F 1.39905 * 109.47042 * 300.00316 * 23 22 21 25 25 F 1.39905 * 109.47014 * 59.99811 * 23 22 21 26 26 H 1.08999 * 109.47049 * 299.99976 * 1 2 3 27 27 H 1.09005 * 109.47151 * 59.99619 * 1 2 3 28 28 H 1.08998 * 109.47171 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.46963 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47384 * 300.00238 * 3 2 1 31 31 H 1.08999 * 109.47105 * 60.00059 * 3 2 1 32 32 H 0.97002 * 119.99722 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.47393 * 180.02562 * 12 2 1 34 34 H 1.08998 * 109.47408 * 59.99713 * 12 2 1 35 35 H 1.00901 * 110.99869 * 56.04956 * 13 12 2 36 36 H 1.09004 * 109.47031 * 299.99620 * 14 13 12 37 37 H 1.08995 * 109.47111 * 59.99900 * 14 13 12 38 38 H 1.07997 * 119.95488 * 0.02562 * 16 15 14 39 39 H 1.08001 * 119.93181 * 180.27642 * 17 16 15 40 40 H 1.08000 * 119.98520 * 179.72114 * 18 17 16 41 41 H 1.09001 * 109.47402 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8297 -2.6034 8 14 2.3222 -1.1194 -4.0080 9 1 3.1472 -2.2863 -3.6040 10 1 1.1675 -1.5865 -4.8166 11 1 3.1470 -0.1856 -4.8162 12 6 2.0400 -0.7213 1.2491 13 7 1.5504 -0.0288 2.4486 14 6 2.0219 -0.6946 3.6702 15 6 1.5003 0.0419 4.8771 16 6 2.3210 0.9209 5.5587 17 6 1.8427 1.6013 6.6627 18 6 0.5454 1.3964 7.0959 19 6 -0.2785 0.5143 6.4210 20 9 -1.5460 0.3143 6.8436 21 6 0.1992 -0.1660 5.3076 22 8 -0.6081 -1.0337 4.6414 23 6 -0.5937 -2.3956 5.0737 24 9 0.7003 -2.9119 4.9453 25 9 -0.9922 -2.4640 6.4131 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7079 1.1609 -3.4844 33 1 3.1300 -0.7209 1.2494 34 1 1.6767 -1.7489 1.2492 35 1 0.5438 0.0412 2.4402 36 1 1.6587 -1.7223 3.6872 37 1 3.1117 -0.6941 3.6868 38 1 3.3360 1.0796 5.2255 39 1 2.4847 2.2908 7.1907 40 1 0.1754 1.9259 7.9614 41 1 -1.2799 -2.9790 4.4598 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594946226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:25 Heat of formation + Delta-G solvation = -185.481315 kcal Electronic energy + Delta-G solvation = -27585.569445 eV Core-core repulsion = 23242.916816 eV Total energy + Delta-G solvation = -4342.652628 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.26105 -49.96565 -48.34796 -41.02882 -38.65121 -38.37186 -35.73994 -33.33083 -31.47860 -31.13331 -27.49902 -27.45745 -27.21217 -26.72199 -24.69761 -23.58800 -22.53449 -20.35367 -20.10349 -19.27593 -18.97839 -18.32698 -17.84177 -17.60103 -17.05381 -16.84843 -16.58054 -16.19003 -15.72770 -15.52625 -15.35583 -15.07093 -14.79965 -14.71481 -14.56731 -14.32781 -14.09742 -13.87666 -13.44717 -13.36327 -13.27054 -13.03859 -12.93237 -12.81909 -12.64852 -12.48200 -12.40868 -12.08961 -12.04660 -11.81277 -11.29621 -10.95268 -10.58136 -10.33227 -9.96401 -9.74807 -9.14368 -7.94838 -6.11735 -0.18905 0.06372 1.42551 1.46021 1.55265 1.83217 2.46144 2.50539 2.53646 3.03118 3.27467 3.49113 3.56948 3.60061 3.73726 3.83999 4.14278 4.22810 4.29354 4.46267 4.55884 4.67284 4.73496 4.88578 4.89011 4.99916 5.04005 5.18797 5.23316 5.30022 5.36813 5.45198 5.46761 5.55113 5.71931 5.78337 5.95790 6.15906 6.23609 6.34377 6.48767 6.60105 6.97761 7.55944 9.03587 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019851 B = 0.003470 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.195241 B = 8067.310176 C = 8586.322057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.059 3.941 3 C -0.104 4.104 4 C -0.523 4.523 5 H 0.046 0.954 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.945 3.055 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.091 3.909 13 N -0.678 5.678 14 C 0.087 3.913 15 C -0.059 4.059 16 C -0.107 4.107 17 C -0.071 4.071 18 C -0.146 4.146 19 C 0.075 3.925 20 F -0.139 7.139 21 C 0.016 3.984 22 O -0.336 6.336 23 C 0.398 3.602 24 F -0.207 7.207 25 F -0.211 7.211 26 H 0.027 0.973 27 H 0.055 0.945 28 H 0.017 0.983 29 H 0.013 0.987 30 H 0.047 0.953 31 H 0.032 0.968 32 H 0.257 0.743 33 H 0.054 0.946 34 H 0.009 0.991 35 H 0.338 0.662 36 H 0.048 0.952 37 H 0.089 0.911 38 H 0.156 0.844 39 H 0.178 0.822 40 H 0.168 0.832 41 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.477 -1.840 21.076 21.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.059 3.941 3 C -0.162 4.162 4 C -0.562 4.562 5 H 0.064 0.936 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.772 3.228 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C -0.038 4.038 13 N -0.310 5.310 14 C -0.041 4.041 15 C -0.060 4.060 16 C -0.125 4.125 17 C -0.088 4.088 18 C -0.165 4.165 19 C 0.056 3.944 20 F -0.118 7.118 21 C -0.029 4.029 22 O -0.255 6.255 23 C 0.309 3.691 24 F -0.189 7.189 25 F -0.193 7.193 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.036 0.964 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.027 0.973 35 H 0.157 0.843 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.174 0.826 39 H 0.195 0.805 40 H 0.185 0.815 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.187 -1.277 20.825 20.865 hybrid contribution -0.595 -1.465 -0.910 1.824 sum -0.781 -2.741 19.916 20.119 Atomic orbital electron populations 1.21649 0.98372 0.97999 0.99683 1.18151 0.92248 0.92980 0.90757 1.21455 0.97209 0.98313 0.99241 1.21447 1.31104 1.11837 0.91807 0.93554 1.25537 0.95351 0.95624 1.01180 1.69988 1.37495 1.23688 1.23166 0.85714 0.78036 0.78756 0.80311 1.19556 1.21010 1.20967 1.21840 0.98555 0.93863 0.89519 1.60629 1.16507 1.53266 1.00588 1.21069 1.00826 0.95404 0.86837 1.20130 0.91362 0.97980 0.96548 1.21424 1.01139 0.94776 0.95183 1.21555 0.94442 0.97728 0.95107 1.21478 0.94528 0.98598 1.01880 1.18283 0.80676 1.00672 0.94810 1.91480 1.36955 1.94092 1.89277 1.18685 0.91548 0.97286 0.95331 1.86717 1.63176 1.18048 1.57585 1.24336 0.81882 0.82826 0.80028 1.93012 1.43511 1.86851 1.95523 1.93066 1.90574 1.95882 1.39740 0.95378 0.92589 0.96385 0.96763 0.93421 0.94947 0.93387 0.92718 0.97269 0.84334 0.93451 0.89307 0.82640 0.80470 0.81473 0.76670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.69 7.92 71.98 0.57 -5.12 16 2 C 0.06 2.86 0.57 -52.93 -0.03 2.83 16 3 C -0.10 -5.09 8.09 71.98 0.58 -4.51 16 4 C -0.52 -28.11 8.01 25.60 0.21 -27.90 16 5 H 0.05 2.48 7.74 -2.91 -0.02 2.46 16 6 C 0.02 1.19 5.15 84.65 0.44 1.62 16 7 N -0.90 -50.56 9.35 21.45 0.20 -50.36 16 8 Si 0.94 43.21 29.54 68.60 2.03 45.23 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 C 0.09 3.73 4.59 86.30 0.40 4.13 16 13 N -0.68 -23.94 5.70 -517.93 -2.95 -26.89 16 14 C 0.09 2.52 5.42 85.56 0.46 2.99 16 15 C -0.06 -1.53 5.25 -19.78 -0.10 -1.64 16 16 C -0.11 -2.12 9.66 22.26 0.22 -1.90 16 17 C -0.07 -1.08 10.04 22.28 0.22 -0.85 16 18 C -0.15 -2.63 10.02 22.30 0.22 -2.40 16 19 C 0.08 1.88 7.03 22.45 0.16 2.04 16 20 F -0.14 -3.78 16.78 44.97 0.75 -3.02 16 21 C 0.02 0.42 5.31 22.53 0.12 0.54 16 22 O -0.34 -9.23 9.52 -93.05 -0.89 -10.12 16 23 C 0.40 8.65 6.34 113.37 0.72 9.36 16 24 F -0.21 -5.07 14.39 44.97 0.65 -4.42 16 25 F -0.21 -5.05 16.65 44.97 0.75 -4.30 16 26 H 0.03 1.20 6.57 -2.39 -0.02 1.19 16 27 H 0.06 2.99 6.07 -2.38 -0.01 2.97 16 28 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 2.57 6.07 -2.38 -0.01 2.56 16 31 H 0.03 1.45 7.60 -2.39 -0.02 1.43 16 32 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 33 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.34 12.47 6.71 -89.69 -0.60 11.87 16 36 H 0.05 1.41 5.09 -2.39 -0.01 1.40 16 37 H 0.09 2.38 8.00 -2.39 -0.02 2.36 16 38 H 0.16 2.51 8.03 -2.91 -0.02 2.49 16 39 H 0.18 1.29 8.06 -2.91 -0.02 1.27 16 40 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 41 H 0.22 2.74 8.14 -2.39 -0.02 2.72 16 Total: -1.00 -63.78 343.68 5.18 -58.60 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.46 Total: 16.10 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 4.18 Total: -20.81 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -2.75 Total: -77.24 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: -0.89 Total: -10.12 kcal Atomic # 9 Polarization: -13.90 SS G_CDS: 2.15 Total: -11.75 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.23 kcal Total: -63.78 5.18 -58.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594946226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.884 kcal (2) G-P(sol) polarization free energy of solvation -63.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds