Wall clock time and date at job start Tue Mar 31 2020 11:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46723 * 2 1 4 4 C 1.50703 * 109.47456 * 119.99348 * 2 1 3 5 5 C 1.38253 * 120.00216 * 299.98723 * 4 2 1 6 6 C 1.38220 * 119.99806 * 179.97438 * 5 4 2 7 7 C 1.38257 * 119.99734 * 359.80929 * 6 5 4 8 8 C 1.38210 * 120.00419 * 0.44247 * 7 6 5 9 9 C 1.50698 * 120.00120 * 179.78741 * 8 7 6 10 10 S 1.81001 * 109.47052 * 269.72319 * 9 8 7 11 11 C 1.76202 * 99.99784 * 179.97438 * 10 9 8 12 12 N 1.32388 * 126.26021 * 359.97438 * 11 10 9 13 13 N 1.28516 * 110.20609 * 180.02562 * 12 11 10 14 14 C 1.33098 * 109.74302 * 0.02562 * 13 12 11 15 15 C 1.39776 * 126.56257 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99778 * 186.09356 * 15 14 13 17 17 C 1.40085 * 120.00068 * 6.08606 * 15 14 13 18 18 N 1.30808 * 119.99942 * 184.12744 * 17 15 14 19 19 Si 1.86799 * 119.99669 * 4.13543 * 17 15 14 20 20 H 1.48509 * 109.46950 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47355 * 299.99259 * 19 17 15 22 22 H 1.48501 * 109.47215 * 59.99928 * 19 17 15 23 23 N 1.36669 * 126.25987 * 180.30691 * 11 10 9 24 24 C 1.46505 * 127.15024 * 359.97438 * 23 11 10 25 25 C 1.38214 * 119.99373 * 119.99887 * 4 2 1 26 26 H 1.08998 * 109.47658 * 60.00163 * 1 2 3 27 27 H 1.09002 * 109.46611 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47283 * 299.99966 * 1 2 3 29 29 H 1.09002 * 109.47283 * 240.00034 * 2 1 3 30 30 H 1.09004 * 109.47268 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47245 * 299.99697 * 3 2 1 32 32 H 1.09002 * 109.47213 * 59.99991 * 3 2 1 33 33 H 1.07999 * 119.99986 * 359.97092 * 5 4 2 34 34 H 1.07997 * 119.99613 * 179.97438 * 6 5 4 35 35 H 1.07997 * 119.99490 * 180.22804 * 7 6 5 36 36 H 1.09003 * 109.46642 * 149.72405 * 9 8 7 37 37 H 1.08993 * 109.47041 * 29.72733 * 9 8 7 38 38 H 0.97000 * 120.00392 * 354.84969 * 18 17 15 39 39 H 1.08991 * 109.47295 * 270.14314 * 24 23 11 40 40 H 1.08996 * 109.46934 * 30.14387 * 24 23 11 41 41 H 1.09000 * 109.46691 * 150.13746 * 24 23 11 42 42 H 1.07992 * 120.00469 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.6987 -0.2377 2.4862 6 6 2.1591 -0.8895 3.6148 7 6 2.9501 -2.0163 3.4878 8 6 3.2880 -2.4857 2.2326 9 6 4.1541 -3.7112 2.0943 10 16 5.8943 -3.2168 2.0379 11 6 6.6564 -4.7975 1.8794 12 7 6.0343 -5.9649 1.8263 13 7 6.8884 -6.9182 1.7100 14 6 8.1209 -6.4166 1.6817 15 6 9.3116 -7.1394 1.5651 16 1 10.2615 -6.6329 1.6518 17 6 9.2728 -8.5208 1.3359 18 7 10.3839 -9.2105 1.3072 19 14 7.6343 -9.3779 1.0710 20 1 7.8644 -10.8284 0.8503 21 1 6.7774 -9.1889 2.2690 22 1 6.9587 -8.7979 -0.1174 23 7 7.9982 -5.0432 1.7952 24 6 9.0814 -4.0570 1.8176 25 6 2.8270 -1.8340 1.1037 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4427 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.0783 0.6408 2.5853 34 1 1.8988 -0.5201 4.5956 35 1 3.3067 -2.5277 4.3696 36 1 3.8956 -4.2368 1.1751 37 1 3.9908 -4.3696 2.9475 38 1 11.2386 -8.7561 1.3698 39 1 9.2983 -3.7324 0.8000 40 1 8.7782 -3.1980 2.4161 41 1 9.9734 -4.5069 2.2535 42 1 3.0875 -2.2033 0.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596023678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:56 Heat of formation + Delta-G solvation = 58.815946 kcal Electronic energy + Delta-G solvation = -22867.403553 eV Core-core repulsion = 19552.246811 eV Total energy + Delta-G solvation = -3315.156742 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.93833 -39.79116 -35.86629 -33.95042 -33.59960 -32.47606 -30.20462 -30.01703 -27.40730 -27.18718 -26.65660 -25.25178 -23.28545 -22.25996 -21.43847 -20.31158 -19.53634 -18.20853 -16.98478 -16.46159 -15.88754 -15.36400 -15.16872 -15.03694 -14.46598 -14.21496 -13.97461 -13.78614 -13.67321 -13.37192 -13.02474 -12.82846 -12.77636 -12.57624 -12.51454 -12.21693 -12.15742 -11.93763 -11.45840 -11.39169 -11.14631 -10.89489 -10.85217 -10.80334 -10.46269 -9.91093 -9.58145 -9.40766 -9.10208 -8.88695 -8.71171 -8.65584 -8.39958 -7.43943 -7.10390 -4.85526 1.00296 1.29241 2.05646 2.62742 2.89900 3.56201 3.59356 3.71970 3.87056 4.03723 4.13927 4.38453 4.40468 4.52026 4.70770 4.88442 4.93859 5.02720 5.09347 5.09954 5.28115 5.34346 5.36898 5.37227 5.40853 5.54709 5.62199 5.71544 5.73432 5.77606 5.89521 5.92294 5.97013 5.98453 6.02282 6.35656 6.37304 6.47526 6.53144 6.63509 6.88866 7.10860 7.38561 7.51978 8.03397 8.33704 8.54246 9.94969 10.09957 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.025043 B = 0.002716 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.806835 B =10307.308773 C =10538.254831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.078 4.078 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.105 4.105 8 C -0.066 4.066 9 C -0.055 4.055 10 S -0.037 6.037 11 C 0.065 3.935 12 N -0.270 5.270 13 N -0.416 5.416 14 C 0.345 3.655 15 C -0.492 4.492 16 H 0.083 0.917 17 C 0.064 3.936 18 N -0.807 5.807 19 Si 1.112 2.888 20 H -0.311 1.311 21 H -0.260 1.260 22 H -0.281 1.281 23 N -0.512 5.512 24 C 0.102 3.898 25 C -0.099 4.099 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.283 0.717 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.020 19.557 0.293 24.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.078 4.078 5 C -0.133 4.133 6 C -0.137 4.137 7 C -0.125 4.125 8 C -0.068 4.068 9 C -0.203 4.203 10 S 0.193 5.807 11 C -0.309 4.309 12 N -0.114 5.114 13 N -0.266 5.266 14 C 0.101 3.899 15 C -0.533 4.533 16 H 0.101 0.899 17 C -0.158 4.158 18 N -0.431 5.431 19 Si 0.941 3.059 20 H -0.241 1.241 21 H -0.186 1.186 22 H -0.207 1.207 23 N -0.213 5.213 24 C -0.043 4.043 25 C -0.119 4.119 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.217 18.146 0.122 23.682 hybrid contribution 1.767 1.311 0.263 2.216 sum -13.450 19.457 0.385 23.656 Atomic orbital electron populations 1.21854 0.94367 1.02079 1.01776 1.20132 0.95894 0.96061 0.95521 1.21857 1.01436 0.95052 1.01754 1.19806 0.97732 0.95572 0.94722 1.20949 1.00380 0.99947 0.91991 1.21088 0.98249 0.95810 0.98524 1.21088 0.98006 0.96552 0.96891 1.19342 0.97733 0.96004 0.93709 1.22263 0.92674 0.97720 1.07660 1.84791 1.00821 1.00597 1.94526 1.25527 0.84869 0.99575 1.20958 1.74256 1.26782 0.94360 1.15991 1.73985 0.96685 1.20446 1.35473 1.21726 0.95805 0.78495 0.93826 1.19392 0.90499 0.95128 1.48236 0.89903 1.27355 1.05781 0.93904 0.88791 1.70675 0.99626 1.39756 1.33060 0.82698 0.71077 0.71673 0.80437 1.24134 1.18592 1.20713 1.45839 1.04466 1.07237 1.63805 1.21537 0.89721 0.91103 1.01909 1.21000 0.97409 0.95094 0.98356 0.92444 0.92458 0.92535 0.90340 0.92387 0.92453 0.92536 0.86309 0.86014 0.85730 0.88152 0.88133 0.90558 0.92152 0.91172 0.90268 0.85766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.01 37.16 0.33 -0.67 16 2 C -0.06 -0.47 3.09 -91.77 -0.28 -0.75 16 3 C -0.14 -1.04 9.01 37.16 0.33 -0.70 16 4 C -0.08 -0.79 4.78 -104.62 -0.50 -1.29 16 5 C -0.11 -1.07 8.71 -39.58 -0.34 -1.42 16 6 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 7 C -0.11 -1.21 9.70 -39.58 -0.38 -1.60 16 8 C -0.07 -0.84 5.13 -104.62 -0.54 -1.38 16 9 C -0.05 -0.83 5.35 36.00 0.19 -0.64 16 10 S -0.04 -0.63 21.77 -107.50 -2.34 -2.97 16 11 C 0.06 1.47 8.09 -87.28 -0.71 0.77 16 12 N -0.27 -6.98 11.62 30.89 0.36 -6.62 16 13 N -0.42 -11.66 7.52 31.26 0.23 -11.42 16 14 C 0.34 9.28 7.27 -154.81 -1.13 8.16 16 15 C -0.49 -13.29 9.50 -38.31 -0.36 -13.65 16 16 H 0.08 2.17 7.46 -52.49 -0.39 1.78 16 17 C 0.06 1.75 5.52 -17.29 -0.10 1.66 16 18 N -0.81 -21.78 13.65 55.56 0.76 -21.02 16 19 Si 1.11 28.25 25.90 -169.99 -4.40 23.85 16 20 H -0.31 -7.58 7.11 56.52 0.40 -7.18 16 21 H -0.26 -6.82 6.76 56.52 0.38 -6.44 16 22 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 23 N -0.51 -11.99 3.26 -123.18 -0.40 -12.39 16 24 C 0.10 1.83 10.89 59.85 0.65 2.48 16 25 C -0.10 -1.15 9.33 -39.58 -0.37 -1.52 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.37 7.39 -51.93 -0.38 -0.01 16 29 H 0.08 0.64 7.88 -51.93 -0.41 0.23 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.38 7.39 -51.93 -0.38 0.00 16 33 H 0.12 0.89 7.10 -52.49 -0.37 0.51 16 34 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.10 1.58 8.09 -51.91 -0.42 1.16 16 37 H 0.10 1.58 8.08 -51.92 -0.42 1.16 16 38 H 0.28 7.25 8.72 -40.82 -0.36 6.89 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.09 7.85 -51.93 -0.41 0.68 16 41 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 42 H 0.12 1.39 7.94 -52.49 -0.42 0.97 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -31.45 362.32 -10.05 -41.50 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -6.12 Total: -4.26 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -3.59 Total: -12.13 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.95 Total: -51.45 kcal Atomic # 14 Polarization: 28.25 SS G_CDS: -4.40 Total: 23.85 kcal Atomic # 16 Polarization: -0.63 SS G_CDS: -2.34 Total: -2.97 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.45 -10.05 -41.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596023678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.320 kcal (2) G-P(sol) polarization free energy of solvation -31.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds