Wall clock time and date at job start Tue Mar 31 2020 11:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46723 * 2 1 4 4 C 1.50703 * 109.47456 * 119.99348 * 2 1 3 5 5 C 1.38253 * 120.00216 * 299.98723 * 4 2 1 6 6 C 1.38220 * 119.99806 * 179.97438 * 5 4 2 7 7 C 1.38257 * 119.99734 * 359.80929 * 6 5 4 8 8 C 1.38210 * 120.00419 * 0.44247 * 7 6 5 9 9 C 1.50698 * 120.00120 * 179.78741 * 8 7 6 10 10 S 1.81001 * 109.47052 * 269.72319 * 9 8 7 11 11 C 1.76202 * 99.99784 * 179.97438 * 10 9 8 12 12 N 1.32388 * 126.26021 * 359.97438 * 11 10 9 13 13 N 1.28516 * 110.20609 * 180.02562 * 12 11 10 14 14 C 1.33098 * 109.74302 * 0.02562 * 13 12 11 15 15 C 1.39776 * 126.56257 * 179.97438 * 14 13 12 16 16 H 1.07999 * 119.99778 * 186.09356 * 15 14 13 17 17 C 1.40085 * 120.00068 * 6.08606 * 15 14 13 18 18 N 1.30808 * 119.99942 * 184.12744 * 17 15 14 19 19 Si 1.86799 * 119.99669 * 4.13543 * 17 15 14 20 20 H 1.48509 * 109.46950 * 179.97438 * 19 17 15 21 21 H 1.48495 * 109.47355 * 299.99259 * 19 17 15 22 22 H 1.48501 * 109.47215 * 59.99928 * 19 17 15 23 23 N 1.36669 * 126.25987 * 180.30691 * 11 10 9 24 24 C 1.46505 * 127.15024 * 359.97438 * 23 11 10 25 25 C 1.38214 * 119.99373 * 119.99887 * 4 2 1 26 26 H 1.08998 * 109.47658 * 60.00163 * 1 2 3 27 27 H 1.09002 * 109.46611 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47283 * 299.99966 * 1 2 3 29 29 H 1.09002 * 109.47283 * 240.00034 * 2 1 3 30 30 H 1.09004 * 109.47268 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47245 * 299.99697 * 3 2 1 32 32 H 1.09002 * 109.47213 * 59.99991 * 3 2 1 33 33 H 1.07999 * 119.99986 * 359.97092 * 5 4 2 34 34 H 1.07997 * 119.99613 * 179.97438 * 6 5 4 35 35 H 1.07997 * 119.99490 * 180.22804 * 7 6 5 36 36 H 1.09003 * 109.46642 * 149.72405 * 9 8 7 37 37 H 1.08993 * 109.47041 * 29.72733 * 9 8 7 38 38 H 0.97000 * 120.00392 * 354.84969 * 18 17 15 39 39 H 1.08991 * 109.47295 * 270.14314 * 24 23 11 40 40 H 1.08996 * 109.46934 * 30.14387 * 24 23 11 41 41 H 1.09000 * 109.46691 * 150.13746 * 24 23 11 42 42 H 1.07992 * 120.00469 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.6987 -0.2377 2.4862 6 6 2.1591 -0.8895 3.6148 7 6 2.9501 -2.0163 3.4878 8 6 3.2880 -2.4857 2.2326 9 6 4.1541 -3.7112 2.0943 10 16 5.8943 -3.2168 2.0379 11 6 6.6564 -4.7975 1.8794 12 7 6.0343 -5.9649 1.8263 13 7 6.8884 -6.9182 1.7100 14 6 8.1209 -6.4166 1.6817 15 6 9.3116 -7.1394 1.5651 16 1 10.2615 -6.6329 1.6518 17 6 9.2728 -8.5208 1.3359 18 7 10.3839 -9.2105 1.3072 19 14 7.6343 -9.3779 1.0710 20 1 7.8644 -10.8284 0.8503 21 1 6.7774 -9.1889 2.2690 22 1 6.9587 -8.7979 -0.1174 23 7 7.9982 -5.0432 1.7952 24 6 9.0814 -4.0570 1.8176 25 6 2.8270 -1.8340 1.1037 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4427 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.0783 0.6408 2.5853 34 1 1.8988 -0.5201 4.5956 35 1 3.3067 -2.5277 4.3696 36 1 3.8956 -4.2368 1.1751 37 1 3.9908 -4.3696 2.9475 38 1 11.2386 -8.7561 1.3698 39 1 9.2983 -3.7324 0.8000 40 1 8.7782 -3.1980 2.4161 41 1 9.9734 -4.5069 2.2535 42 1 3.0875 -2.2033 0.1228 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596023678.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:55 Heat of formation + Delta-G solvation = 43.978653 kcal Electronic energy + Delta-G solvation = -22868.046946 eV Core-core repulsion = 19552.246811 eV Total energy + Delta-G solvation = -3315.800135 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.86290 -40.60226 -36.58650 -35.95404 -35.42269 -33.40724 -32.01242 -30.96561 -28.59322 -28.03129 -27.94054 -27.09304 -24.03726 -23.38987 -23.07395 -22.12921 -20.40122 -20.20803 -18.37331 -17.49531 -17.05504 -16.93523 -16.64390 -16.09601 -15.95347 -15.69175 -15.20644 -14.91181 -14.72957 -14.62357 -14.32754 -14.25022 -13.98395 -13.84291 -13.59660 -13.24974 -13.11408 -12.91978 -12.90116 -12.81180 -12.24194 -12.06996 -11.96108 -11.79363 -11.57450 -11.53640 -11.50530 -11.42431 -10.92760 -10.58813 -10.39567 -9.73534 -9.54517 -9.49545 -8.71918 -6.87924 -0.08316 0.47230 0.66379 0.96581 1.25125 1.52789 1.58342 1.92281 2.10709 2.19553 2.40598 2.87763 3.02633 3.52916 3.69816 3.90953 3.91757 4.07891 4.18609 4.30947 4.31126 4.35532 4.45488 4.48246 4.53425 4.56907 4.64517 4.66725 4.68430 4.84953 4.95351 5.02815 5.09986 5.12088 5.21195 5.25229 5.34716 5.35496 5.42820 5.56920 5.62486 5.66871 5.72952 5.98946 6.07969 6.37350 6.55104 7.90943 8.13321 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.025043 B = 0.002716 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.806835 B =10307.308773 C =10538.254831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.141 4.141 4 C -0.079 4.079 5 C -0.109 4.109 6 C -0.117 4.117 7 C -0.116 4.116 8 C -0.082 4.082 9 C -0.049 4.049 10 S 0.008 5.992 11 C 0.079 3.921 12 N -0.311 5.311 13 N -0.448 5.448 14 C 0.324 3.676 15 C -0.508 4.508 16 H 0.084 0.916 17 C 0.042 3.958 18 N -0.822 5.822 19 Si 1.145 2.855 20 H -0.296 1.296 21 H -0.278 1.278 22 H -0.295 1.295 23 N -0.515 5.515 24 C 0.093 3.907 25 C -0.112 4.112 26 H 0.068 0.932 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.145 0.855 34 H 0.148 0.852 35 H 0.128 0.872 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.286 0.714 39 H 0.078 0.922 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.471 22.754 0.656 27.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.077 4.077 3 C -0.199 4.199 4 C -0.079 4.079 5 C -0.127 4.127 6 C -0.135 4.135 7 C -0.136 4.136 8 C -0.085 4.085 9 C -0.198 4.198 10 S 0.237 5.763 11 C -0.296 4.296 12 N -0.154 5.154 13 N -0.297 5.297 14 C 0.077 3.923 15 C -0.549 4.549 16 H 0.102 0.898 17 C -0.178 4.178 18 N -0.447 5.447 19 Si 0.974 3.026 20 H -0.225 1.225 21 H -0.205 1.205 22 H -0.223 1.223 23 N -0.215 5.215 24 C -0.049 4.049 25 C -0.132 4.132 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.162 0.838 34 H 0.166 0.834 35 H 0.146 0.854 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.102 0.898 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.641 21.339 0.482 27.065 hybrid contribution 2.037 0.630 0.177 2.139 sum -14.605 21.969 0.659 26.389 Atomic orbital electron populations 1.21839 0.93342 1.01841 1.02811 1.20179 0.96683 0.96422 0.94427 1.21843 1.00793 0.94421 1.02806 1.20059 0.96947 0.94919 0.96018 1.21295 0.99698 1.00307 0.91423 1.21403 0.97169 0.94875 1.00017 1.21240 0.98588 0.97347 0.96412 1.19190 0.98687 0.95743 0.94843 1.22282 0.91768 0.98971 1.06751 1.84690 1.01672 0.96359 1.93574 1.26645 0.84991 1.01494 1.16435 1.74189 1.27011 0.95174 1.18976 1.73861 0.97481 1.22097 1.36221 1.21819 0.95533 0.80211 0.94708 1.19397 0.90692 0.95303 1.49487 0.89772 1.27742 1.06587 0.94522 0.88928 1.70664 0.99801 1.39868 1.34356 0.82212 0.69559 0.71961 0.78860 1.22537 1.20469 1.22272 1.46208 1.05850 1.07070 1.62362 1.21905 0.88525 0.90759 1.03759 1.21095 0.98189 0.95902 0.97978 0.91270 0.93335 0.91690 0.90807 0.93372 0.91267 0.91683 0.83751 0.83416 0.85393 0.89216 0.88987 0.90224 0.90318 0.88372 0.89786 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.01 71.98 0.65 -0.96 16 2 C -0.06 -0.82 3.09 -11.54 -0.04 -0.85 16 3 C -0.14 -1.64 9.01 71.98 0.65 -1.00 16 4 C -0.08 -1.42 4.78 -19.87 -0.09 -1.51 16 5 C -0.11 -1.68 8.71 22.27 0.19 -1.49 16 6 C -0.12 -1.93 10.05 22.27 0.22 -1.71 16 7 C -0.12 -2.45 9.70 22.27 0.22 -2.23 16 8 C -0.08 -2.01 5.13 -19.87 -0.10 -2.11 16 9 C -0.05 -1.48 5.35 71.24 0.38 -1.10 16 10 S 0.01 0.25 21.77 -56.49 -1.23 -0.98 16 11 C 0.08 3.58 8.09 179.18 1.45 5.03 16 12 N -0.31 -16.28 11.62 -56.17 -0.65 -16.94 16 13 N -0.45 -25.62 7.52 -55.02 -0.41 -26.03 16 14 C 0.32 17.66 7.27 133.23 0.97 18.63 16 15 C -0.51 -27.82 9.50 23.09 0.22 -27.60 16 16 H 0.08 4.45 7.46 -2.91 -0.02 4.43 16 17 C 0.04 2.34 5.52 85.29 0.47 2.81 16 18 N -0.82 -44.66 13.65 21.86 0.30 -44.37 16 19 Si 1.15 58.99 25.90 68.60 1.78 60.77 16 20 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 21 H -0.28 -14.98 6.76 99.48 0.67 -14.30 16 22 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 23 N -0.52 -23.77 3.26 -543.63 -1.77 -25.54 16 24 C 0.09 3.15 10.89 127.77 1.39 4.54 16 25 C -0.11 -2.48 9.33 22.27 0.21 -2.27 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.63 7.39 -2.39 -0.02 0.61 16 29 H 0.07 1.09 7.88 -2.39 -0.02 1.07 16 30 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.06 0.64 7.39 -2.39 -0.02 0.63 16 33 H 0.14 1.51 7.10 -2.91 -0.02 1.48 16 34 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 35 H 0.13 2.55 8.06 -2.91 -0.02 2.52 16 36 H 0.09 2.87 8.09 -2.39 -0.02 2.85 16 37 H 0.09 2.91 8.08 -2.40 -0.02 2.89 16 38 H 0.29 14.80 8.72 -92.71 -0.81 13.99 16 39 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.10 2.77 7.85 -2.39 -0.02 2.75 16 41 H 0.08 2.79 7.48 -2.39 -0.02 2.77 16 42 H 0.12 2.67 7.94 -2.91 -0.02 2.64 16 Total: -1.00 -68.33 362.32 5.73 -62.60 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: 0.94 Total: 2.31 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 6.79 Total: -11.82 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -2.54 Total: -112.88 kcal Atomic # 14 Polarization: 58.99 SS G_CDS: 1.78 Total: 60.77 kcal Atomic # 16 Polarization: 0.25 SS G_CDS: -1.23 Total: -0.98 kcal Total: -68.33 5.73 -62.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596023678.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.577 kcal (2) G-P(sol) polarization free energy of solvation -68.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds