Wall clock time and date at job start Tue Mar 31 2020 11:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.75360 * 124.30674 * 2 1 4 4 C 1.75751 * 92.18439 * 180.02562 * 3 2 1 5 5 N 1.33926 * 131.28151 * 180.30397 * 4 3 2 6 6 C 1.31262 * 121.04617 * 180.21191 * 5 4 3 7 7 N 1.32116 * 122.17666 * 359.44074 * 6 5 4 8 8 C 1.32451 * 121.18844 * 0.28277 * 7 6 5 9 9 N 1.38319 * 120.52822 * 180.02562 * 8 7 6 10 10 C 1.46847 * 111.00254 * 64.67726 * 9 8 7 11 11 C 1.53033 * 109.52558 * 174.15989 * 10 9 8 12 12 C 1.53117 * 109.27816 * 59.17879 * 11 10 9 13 13 C 1.53121 * 109.16148 * 302.34450 * 12 11 10 14 14 H 1.09008 * 109.50150 * 297.71634 * 13 12 11 15 15 C 1.50693 * 109.50611 * 177.59692 * 13 12 11 16 16 H 1.08000 * 120.00256 * 240.00196 * 15 13 12 17 17 C 1.37885 * 120.00200 * 60.00007 * 15 13 12 18 18 N 1.31513 * 119.99727 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99991 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47227 * 60.00076 * 19 17 15 21 21 H 1.48502 * 109.46818 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47358 * 299.99804 * 19 17 15 23 23 C 1.46845 * 111.00160 * 300.46220 * 9 8 7 24 24 C 1.39719 * 109.61689 * 359.97438 * 4 3 2 25 25 C 1.31892 * 124.31170 * 180.02562 * 2 1 3 26 26 C 1.50700 * 122.58996 * 359.97438 * 25 2 1 27 27 H 1.08996 * 109.46999 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46553 * 119.97568 * 1 2 3 29 29 H 1.08995 * 109.47273 * 239.97836 * 1 2 3 30 30 H 1.07992 * 118.91239 * 179.71927 * 6 5 4 31 31 H 1.09008 * 109.45761 * 294.17465 * 10 9 8 32 32 H 1.09005 * 109.46501 * 54.14747 * 10 9 8 33 33 H 1.08999 * 109.50222 * 179.11535 * 11 10 9 34 34 H 1.08995 * 109.50641 * 299.23722 * 11 10 9 35 35 H 1.08997 * 109.52670 * 62.25355 * 12 11 10 36 36 H 1.09008 * 109.52270 * 182.44119 * 12 11 10 37 37 H 0.96994 * 120.00353 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.46126 * 305.85978 * 23 9 8 39 39 H 1.09000 * 109.46062 * 65.82711 * 23 9 8 40 40 H 1.09003 * 109.47203 * 264.83510 * 26 25 2 41 41 H 1.09008 * 109.47306 * 24.83363 * 26 25 2 42 42 H 1.08998 * 109.47083 * 144.83148 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4954 1.4485 0.0000 4 6 3.9838 0.5140 -0.0008 5 7 5.2673 0.8965 0.0042 6 6 6.2373 0.0122 -0.0018 7 7 6.0038 -1.2882 -0.0020 8 6 4.7673 -1.7631 -0.0017 9 7 4.5386 -3.1272 -0.0014 10 6 5.0300 -3.7430 1.2379 11 6 4.6318 -5.2203 1.2678 12 6 5.2311 -5.9301 0.0506 13 6 4.7418 -5.2393 -1.2253 14 1 3.6571 -5.3244 -1.2922 15 6 5.3736 -5.8947 -2.4262 16 1 5.9924 -5.3148 -3.0949 17 6 5.1616 -7.2350 -2.6715 18 7 4.4077 -7.9411 -1.8575 19 14 5.9442 -8.0472 -4.1605 20 1 7.4216 -7.9283 -4.0699 21 1 5.5649 -9.4825 -4.1978 22 1 5.4686 -7.3767 -5.3972 23 6 5.1368 -3.7614 -1.1830 24 6 3.6813 -0.8500 -0.0004 25 6 2.2505 -1.0894 -0.0005 26 6 1.6593 -2.4756 -0.0005 27 1 -0.3633 1.0276 0.0005 28 1 -0.3632 -0.5135 -0.8902 29 1 -0.3633 -0.5141 0.8897 30 1 7.2600 0.3590 -0.0021 31 1 6.1160 -3.6586 1.2794 32 1 4.5930 -3.2317 2.0957 33 1 5.0103 -5.6808 2.1804 34 1 3.5455 -5.3051 1.2402 35 1 6.3188 -5.8793 0.0982 36 1 4.9142 -6.9731 0.0446 37 1 4.2589 -8.8840 -2.0297 38 1 4.7774 -3.2635 -2.0835 39 1 6.2222 -3.6770 -1.1301 40 1 1.6022 -2.8463 1.0229 41 1 0.6586 -2.4439 -0.4318 42 1 2.2892 -3.1392 -0.5928 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596322941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:01 Heat of formation + Delta-G solvation = 62.261831 kcal Electronic energy + Delta-G solvation = -24699.261539 eV Core-core repulsion = 21384.254222 eV Total energy + Delta-G solvation = -3315.007317 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.17634 -38.31282 -37.20546 -34.45390 -32.79504 -32.07407 -30.62329 -29.97991 -29.14543 -26.51394 -25.03789 -24.69052 -23.53904 -22.08806 -21.52150 -19.47300 -18.82553 -18.12564 -17.43152 -16.57355 -16.15542 -15.39205 -15.14719 -14.68676 -14.50688 -14.16093 -13.88752 -13.53913 -13.48656 -12.96440 -12.75159 -12.65187 -12.59077 -12.51644 -12.27545 -11.87351 -11.82928 -11.48042 -10.97217 -10.94683 -10.87753 -10.85610 -10.76769 -10.42066 -10.21570 -9.89780 -9.58757 -9.46177 -9.06148 -8.87819 -8.77713 -8.39163 -8.17424 -7.96855 -6.02711 -4.08839 0.43304 0.90337 1.09085 1.78522 2.15452 3.30443 3.35089 3.37910 3.69927 3.74519 4.18936 4.39674 4.48178 4.49605 4.81834 5.00181 5.20536 5.27618 5.35154 5.39980 5.53226 5.67822 5.69359 5.72616 5.91594 5.95060 6.00378 6.05262 6.15306 6.26349 6.35628 6.36636 6.56255 6.65023 6.72617 6.80464 6.91343 7.04149 7.27199 7.36131 7.62489 7.70924 7.97520 8.05943 8.09753 8.39639 8.93759 9.55774 11.03248 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017358 B = 0.003915 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.681647 B = 7149.754697 C = 7583.169361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.190 4.190 3 S 0.140 5.860 4 C 0.090 3.910 5 N -0.505 5.505 6 C 0.319 3.681 7 N -0.552 5.552 8 C 0.418 3.582 9 N -0.489 5.489 10 C 0.071 3.929 11 C -0.115 4.115 12 C -0.112 4.112 13 C 0.059 3.941 14 H 0.036 0.964 15 C -0.516 4.516 16 H 0.053 0.947 17 C 0.066 3.934 18 N -0.887 5.887 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.073 3.927 24 C -0.151 4.151 25 C -0.044 4.044 26 C -0.097 4.097 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.199 0.801 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.034 0.966 36 H 0.094 0.906 37 H 0.261 0.739 38 H 0.058 0.942 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.840 14.448 6.691 16.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.305 4.305 3 S 0.400 5.600 4 C -0.161 4.161 5 N -0.222 5.222 6 C 0.026 3.974 7 N -0.270 5.270 8 C 0.173 3.827 9 N -0.213 5.213 10 C -0.056 4.056 11 C -0.153 4.153 12 C -0.150 4.150 13 C 0.040 3.960 14 H 0.054 0.946 15 C -0.555 4.555 16 H 0.072 0.928 17 C -0.136 4.136 18 N -0.526 5.526 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.052 4.052 24 C -0.166 4.166 25 C -0.055 4.055 26 C -0.156 4.156 27 H 0.085 0.915 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.216 0.784 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.844 16.099 6.701 18.391 hybrid contribution 1.084 -1.911 -0.802 2.339 sum -4.760 14.188 5.898 16.086 Atomic orbital electron populations 1.20322 0.87048 1.02719 1.03401 1.23791 1.00271 0.95074 1.11370 1.84003 0.91027 1.06593 1.78409 1.23799 0.97361 0.94301 1.00667 1.68027 0.97864 1.39522 1.16785 1.24734 0.98456 0.83897 0.90302 1.68591 1.23999 1.17574 1.16847 1.20377 0.85759 0.91894 0.84715 1.60221 1.58524 0.96716 1.05883 1.22087 0.98124 0.96402 0.88962 1.21694 1.01449 0.92443 0.99747 1.21691 0.97858 1.02650 0.92839 1.18673 0.97372 0.86344 0.93586 0.94576 1.21043 1.30807 0.94511 1.09120 0.92849 1.24894 0.95028 0.97263 0.96382 1.69861 1.37993 1.07950 1.36789 0.86679 0.79779 0.78316 0.83350 1.20323 1.21272 1.20308 1.22463 0.96799 0.98119 0.87839 1.20325 0.95050 0.93178 1.08091 1.19397 0.89542 0.97211 0.99372 1.20671 1.00316 0.91312 1.03304 0.91487 0.90117 0.90260 0.78415 0.93756 0.92461 0.92850 0.91784 0.94761 0.88746 0.92922 0.92367 0.94019 0.90936 0.91981 0.88292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 9.26 36.01 0.33 -0.31 16 2 C -0.19 -2.28 6.38 -36.21 -0.23 -2.51 16 3 S 0.14 1.73 23.19 -107.50 -2.49 -0.76 16 4 C 0.09 1.41 7.69 -16.09 -0.12 1.28 16 5 N -0.51 -7.88 10.47 -13.32 -0.14 -8.02 16 6 C 0.32 4.72 12.27 -92.33 -1.13 3.58 16 7 N -0.55 -9.45 9.86 -13.43 -0.13 -9.59 16 8 C 0.42 7.35 5.37 -154.58 -0.83 6.53 16 9 N -0.49 -8.89 2.53 -172.53 -0.44 -9.33 16 10 C 0.07 1.22 5.29 -3.84 -0.02 1.20 16 11 C -0.12 -2.09 6.09 -26.65 -0.16 -2.25 16 12 C -0.11 -2.51 5.02 -26.61 -0.13 -2.64 16 13 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 14 H 0.04 0.93 8.14 -51.92 -0.42 0.51 16 15 C -0.52 -13.69 8.56 -34.44 -0.29 -13.99 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 17 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -24.31 11.35 55.43 0.63 -23.68 16 19 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.07 1.53 4.46 -3.84 -0.02 1.51 16 24 C -0.15 -2.47 6.06 -105.24 -0.64 -3.11 16 25 C -0.04 -0.62 5.96 -103.82 -0.62 -1.24 16 26 C -0.10 -1.31 9.35 36.01 0.34 -0.97 16 27 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 28 H 0.08 0.63 7.84 -51.93 -0.41 0.22 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.20 2.14 8.06 -52.49 -0.42 1.71 16 31 H 0.04 0.80 8.09 -51.92 -0.42 0.38 16 32 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 35 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 2.36 6.15 -51.92 -0.32 2.04 16 37 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.06 1.26 8.10 -51.93 -0.42 0.83 16 39 H 0.04 0.92 8.01 -51.93 -0.42 0.50 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.70 7.05 -51.92 -0.37 0.33 16 42 H 0.10 1.61 6.68 -51.93 -0.35 1.26 16 LS Contribution 348.71 15.07 5.25 5.25 Total: -1.00 -28.46 348.71 -12.21 -40.67 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.04 Total: -0.31 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -3.83 Total: -10.05 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: -0.08 Total: -50.62 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -2.49 Total: -0.76 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.46 -12.21 -40.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596322941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.933 kcal (2) G-P(sol) polarization free energy of solvation -28.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds