Wall clock time and date at job start Tue Mar 31 2020 11:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.75360 * 124.30674 * 2 1 4 4 C 1.75751 * 92.18439 * 180.02562 * 3 2 1 5 5 N 1.33926 * 131.28151 * 180.30397 * 4 3 2 6 6 C 1.31262 * 121.04617 * 180.21191 * 5 4 3 7 7 N 1.32116 * 122.17666 * 359.44074 * 6 5 4 8 8 C 1.32451 * 121.18844 * 0.28277 * 7 6 5 9 9 N 1.38319 * 120.52822 * 180.02562 * 8 7 6 10 10 C 1.46847 * 111.00254 * 64.67726 * 9 8 7 11 11 C 1.53033 * 109.52558 * 174.15989 * 10 9 8 12 12 C 1.53117 * 109.27816 * 59.17879 * 11 10 9 13 13 C 1.53121 * 109.16148 * 302.34450 * 12 11 10 14 14 H 1.09008 * 109.50150 * 297.71634 * 13 12 11 15 15 C 1.50693 * 109.50611 * 177.59692 * 13 12 11 16 16 H 1.08000 * 120.00256 * 240.00196 * 15 13 12 17 17 C 1.37885 * 120.00200 * 60.00007 * 15 13 12 18 18 N 1.31513 * 119.99727 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 119.99991 * 179.97438 * 17 15 13 20 20 H 1.48494 * 109.47227 * 60.00076 * 19 17 15 21 21 H 1.48502 * 109.46818 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47358 * 299.99804 * 19 17 15 23 23 C 1.46845 * 111.00160 * 300.46220 * 9 8 7 24 24 C 1.39719 * 109.61689 * 359.97438 * 4 3 2 25 25 C 1.31892 * 124.31170 * 180.02562 * 2 1 3 26 26 C 1.50700 * 122.58996 * 359.97438 * 25 2 1 27 27 H 1.08996 * 109.46999 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46553 * 119.97568 * 1 2 3 29 29 H 1.08995 * 109.47273 * 239.97836 * 1 2 3 30 30 H 1.07992 * 118.91239 * 179.71927 * 6 5 4 31 31 H 1.09008 * 109.45761 * 294.17465 * 10 9 8 32 32 H 1.09005 * 109.46501 * 54.14747 * 10 9 8 33 33 H 1.08999 * 109.50222 * 179.11535 * 11 10 9 34 34 H 1.08995 * 109.50641 * 299.23722 * 11 10 9 35 35 H 1.08997 * 109.52670 * 62.25355 * 12 11 10 36 36 H 1.09008 * 109.52270 * 182.44119 * 12 11 10 37 37 H 0.96994 * 120.00353 * 180.02562 * 18 17 15 38 38 H 1.08999 * 109.46126 * 305.85978 * 23 9 8 39 39 H 1.09000 * 109.46062 * 65.82711 * 23 9 8 40 40 H 1.09003 * 109.47203 * 264.83510 * 26 25 2 41 41 H 1.09008 * 109.47306 * 24.83363 * 26 25 2 42 42 H 1.08998 * 109.47083 * 144.83148 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4954 1.4485 0.0000 4 6 3.9838 0.5140 -0.0008 5 7 5.2673 0.8965 0.0042 6 6 6.2373 0.0122 -0.0018 7 7 6.0038 -1.2882 -0.0020 8 6 4.7673 -1.7631 -0.0017 9 7 4.5386 -3.1272 -0.0014 10 6 5.0300 -3.7430 1.2379 11 6 4.6318 -5.2203 1.2678 12 6 5.2311 -5.9301 0.0506 13 6 4.7418 -5.2393 -1.2253 14 1 3.6571 -5.3244 -1.2922 15 6 5.3736 -5.8947 -2.4262 16 1 5.9924 -5.3148 -3.0949 17 6 5.1616 -7.2350 -2.6715 18 7 4.4077 -7.9411 -1.8575 19 14 5.9442 -8.0472 -4.1605 20 1 7.4216 -7.9283 -4.0699 21 1 5.5649 -9.4825 -4.1978 22 1 5.4686 -7.3767 -5.3972 23 6 5.1368 -3.7614 -1.1830 24 6 3.6813 -0.8500 -0.0004 25 6 2.2505 -1.0894 -0.0005 26 6 1.6593 -2.4756 -0.0005 27 1 -0.3633 1.0276 0.0005 28 1 -0.3632 -0.5135 -0.8902 29 1 -0.3633 -0.5141 0.8897 30 1 7.2600 0.3590 -0.0021 31 1 6.1160 -3.6586 1.2794 32 1 4.5930 -3.2317 2.0957 33 1 5.0103 -5.6808 2.1804 34 1 3.5455 -5.3051 1.2402 35 1 6.3188 -5.8793 0.0982 36 1 4.9142 -6.9731 0.0446 37 1 4.2589 -8.8840 -2.0297 38 1 4.7774 -3.2635 -2.0835 39 1 6.2222 -3.6770 -1.1301 40 1 1.6022 -2.8463 1.0229 41 1 0.6586 -2.4439 -0.4318 42 1 2.2892 -3.1392 -0.5928 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596322941.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:00 Heat of formation + Delta-G solvation = 49.402730 kcal Electronic energy + Delta-G solvation = -24699.819152 eV Core-core repulsion = 21384.254222 eV Total energy + Delta-G solvation = -3315.564929 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.39317 -39.82321 -38.24553 -36.09556 -34.38385 -33.34489 -31.94691 -31.75103 -30.13006 -27.62464 -26.98142 -25.95421 -24.79638 -23.48251 -23.16535 -20.69825 -20.33451 -19.37663 -18.79958 -18.11664 -17.51713 -16.82795 -16.52107 -16.22818 -15.81943 -15.58133 -15.14561 -14.88890 -14.60477 -14.41911 -14.33804 -14.16343 -13.75783 -13.50778 -13.45871 -13.26848 -12.85282 -12.81476 -12.74751 -12.64903 -12.54433 -12.11174 -11.93269 -11.84880 -11.83822 -11.56804 -11.39870 -11.10249 -10.74261 -10.44927 -10.37152 -9.89599 -9.67632 -9.00526 -8.08171 -6.21284 -0.69703 -0.34356 0.04161 0.75736 1.09334 1.42908 1.43241 1.50870 2.35274 2.49460 2.50535 3.10430 3.19430 3.26028 3.43804 3.63639 3.98257 4.08155 4.16945 4.29708 4.38580 4.43283 4.53737 4.56824 4.76676 4.78205 4.80499 4.84394 4.90234 4.95792 4.98803 5.01400 5.11502 5.19535 5.25026 5.32180 5.48492 5.62123 5.64041 5.71817 5.75200 6.02083 6.14303 6.17021 6.39597 6.86877 6.88381 7.45978 8.96150 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.017358 B = 0.003915 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.681647 B = 7149.754697 C = 7583.169361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.170 4.170 3 S 0.187 5.813 4 C 0.063 3.937 5 N -0.509 5.509 6 C 0.313 3.687 7 N -0.570 5.570 8 C 0.394 3.606 9 N -0.482 5.482 10 C 0.076 3.924 11 C -0.104 4.104 12 C -0.104 4.104 13 C 0.062 3.938 14 H 0.010 0.990 15 C -0.539 4.539 16 H 0.045 0.955 17 C 0.023 3.977 18 N -0.908 5.908 19 Si 0.949 3.051 20 H -0.275 1.275 21 H -0.281 1.281 22 H -0.274 1.274 23 C 0.095 3.905 24 C -0.161 4.161 25 C -0.075 4.075 26 C -0.089 4.089 27 H 0.086 0.914 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.233 0.767 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.067 0.933 37 H 0.262 0.738 38 H 0.044 0.956 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.027 16.096 7.244 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.285 4.285 3 S 0.447 5.553 4 C -0.188 4.188 5 N -0.226 5.226 6 C 0.020 3.980 7 N -0.289 5.289 8 C 0.149 3.851 9 N -0.206 5.206 10 C -0.050 4.050 11 C -0.142 4.142 12 C -0.142 4.142 13 C 0.043 3.957 14 H 0.028 0.972 15 C -0.578 4.578 16 H 0.063 0.937 17 C -0.176 4.176 18 N -0.547 5.547 19 Si 0.775 3.225 20 H -0.200 1.200 21 H -0.206 1.206 22 H -0.200 1.200 23 C -0.031 4.031 24 C -0.177 4.177 25 C -0.086 4.086 26 C -0.148 4.148 27 H 0.105 0.895 28 H 0.110 0.890 29 H 0.113 0.887 30 H 0.249 0.751 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.040 0.960 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.045 0.955 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.033 17.766 7.261 20.440 hybrid contribution 1.369 -2.296 -0.972 2.845 sum -5.663 15.470 6.289 17.634 Atomic orbital electron populations 1.20541 0.84180 1.04484 1.04632 1.24323 1.02040 0.94317 1.07865 1.83857 0.88736 1.05669 1.77030 1.24331 0.98438 0.95021 1.01052 1.68115 0.98138 1.39617 1.16694 1.25383 0.99832 0.83088 0.89660 1.68547 1.24043 1.18920 1.17431 1.20395 0.86667 0.91416 0.86606 1.60108 1.58026 0.97476 1.04998 1.22054 0.97743 0.95838 0.89387 1.21573 1.01216 0.92778 0.98628 1.21483 0.97100 1.01375 0.94258 1.18540 0.95430 0.88148 0.93578 0.97158 1.21376 1.31095 0.95120 1.10196 0.93701 1.25573 0.95486 0.97731 0.98834 1.69979 1.38693 1.08080 1.37959 0.85763 0.78942 0.77532 0.80308 1.20021 1.20614 1.19953 1.21996 0.95648 0.96551 0.88941 1.20534 0.95861 0.93333 1.07975 1.19457 0.88836 0.98161 1.02178 1.20555 1.00682 0.90458 1.03065 0.89505 0.89032 0.88664 0.75101 0.94563 0.90277 0.90399 0.91679 0.95966 0.91490 0.92880 0.93746 0.95537 0.90611 0.89773 0.91634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.26 71.24 0.66 -0.38 16 2 C -0.17 -3.62 6.38 24.85 0.16 -3.46 16 3 S 0.19 4.15 23.19 -56.49 -1.31 2.84 16 4 C 0.06 1.89 7.69 84.73 0.65 2.54 16 5 N -0.51 -15.35 10.47 -196.06 -2.05 -17.41 16 6 C 0.31 9.03 12.27 180.95 2.22 11.25 16 7 N -0.57 -19.64 9.86 -196.42 -1.94 -21.58 16 8 C 0.39 14.00 5.37 133.97 0.72 14.72 16 9 N -0.48 -17.92 2.53 -699.75 -1.77 -19.69 16 10 C 0.08 2.61 5.29 86.32 0.46 3.07 16 11 C -0.10 -3.77 6.09 30.64 0.19 -3.58 16 12 C -0.10 -4.79 5.02 30.67 0.15 -4.64 16 13 C 0.06 3.07 2.26 -11.49 -0.03 3.04 16 14 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 15 C -0.54 -29.66 8.56 25.60 0.22 -29.44 16 16 H 0.04 2.47 7.74 -2.91 -0.02 2.45 16 17 C 0.02 1.28 5.30 84.66 0.45 1.73 16 18 N -0.91 -50.93 11.35 21.45 0.24 -50.68 16 19 Si 0.95 43.29 29.54 68.60 2.03 45.32 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 23 C 0.09 4.16 4.46 86.33 0.39 4.55 16 24 C -0.16 -5.20 6.06 -20.27 -0.12 -5.32 16 25 C -0.08 -2.04 5.96 -18.94 -0.11 -2.15 16 26 C -0.09 -2.32 9.35 71.24 0.67 -1.66 16 27 H 0.09 0.83 8.13 -2.39 -0.02 0.81 16 28 H 0.09 1.09 7.84 -2.39 -0.02 1.07 16 29 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.23 4.68 8.06 -2.91 -0.02 4.65 16 31 H 0.04 1.31 8.09 -2.38 -0.02 1.29 16 32 H 0.08 2.41 8.10 -2.38 -0.02 2.39 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 3.47 6.15 -2.38 -0.01 3.45 16 37 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 38 H 0.04 2.02 8.10 -2.39 -0.02 2.00 16 39 H 0.03 1.22 8.01 -2.39 -0.02 1.20 16 40 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 41 H 0.08 1.74 7.05 -2.38 -0.02 1.73 16 42 H 0.06 2.18 6.68 -2.39 -0.02 2.16 16 Total: -1.00 -63.20 348.71 2.89 -60.31 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 1.02 Total: 10.64 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: 6.66 Total: -9.74 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -5.52 Total: -109.36 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.31 Total: 2.84 kcal Total: -63.20 2.89 -60.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596322941.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.717 kcal (2) G-P(sol) polarization free energy of solvation -63.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds