Wall clock time and date at job start Tue Mar 31 2020 11:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75356 * 124.30688 * 2 1 4 4 C 1.75752 * 92.18101 * 179.90726 * 3 2 1 5 5 N 1.33933 * 131.27390 * 180.02562 * 4 3 2 6 6 C 1.31253 * 121.04337 * 180.34122 * 5 4 3 7 7 N 1.32115 * 122.17822 * 359.96073 * 6 5 4 8 8 C 1.32453 * 121.19046 * 0.02562 * 7 6 5 9 9 N 1.38327 * 120.52600 * 179.97438 * 8 7 6 10 10 C 1.46842 * 110.99698 * 272.76185 * 9 8 7 11 11 C 1.53040 * 109.52432 * 185.84501 * 10 9 8 12 12 C 1.53124 * 109.27697 * 300.82177 * 11 10 9 13 13 C 1.53121 * 109.15831 * 57.64946 * 12 11 10 14 14 H 1.09008 * 109.50279 * 62.29280 * 13 12 11 15 15 C 1.50704 * 109.53632 * 182.38658 * 13 12 11 16 16 H 1.07994 * 120.00339 * 119.82283 * 15 13 12 17 17 C 1.37884 * 119.99848 * 299.82505 * 15 13 12 18 18 N 1.31504 * 119.99929 * 179.97438 * 17 15 13 19 19 Si 1.86803 * 119.99836 * 359.97438 * 17 15 13 20 20 H 1.48505 * 109.46815 * 89.99997 * 19 17 15 21 21 H 1.48498 * 109.47080 * 209.99753 * 19 17 15 22 22 H 1.48496 * 109.47383 * 329.99893 * 19 17 15 23 23 C 1.46842 * 111.00336 * 36.97566 * 9 8 7 24 24 C 1.39721 * 109.61940 * 0.33946 * 4 3 2 25 25 C 1.31893 * 124.30351 * 180.28667 * 2 1 3 26 26 C 1.50696 * 122.59614 * 0.03791 * 25 2 1 27 27 H 1.08998 * 109.47699 * 269.70633 * 1 2 3 28 28 H 1.09001 * 109.46856 * 29.71006 * 1 2 3 29 29 H 1.08996 * 109.46733 * 149.69989 * 1 2 3 30 30 H 1.08000 * 118.91246 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46760 * 305.85481 * 10 9 8 32 32 H 1.08997 * 109.46560 * 65.83224 * 10 9 8 33 33 H 1.08991 * 109.50590 * 180.88289 * 11 10 9 34 34 H 1.09004 * 109.50613 * 60.75841 * 11 10 9 35 35 H 1.08999 * 109.52610 * 297.75081 * 12 11 10 36 36 H 1.08995 * 109.52509 * 177.55406 * 12 11 10 37 37 H 0.97004 * 120.00408 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.46424 * 294.17527 * 23 9 8 39 39 H 1.08999 * 109.46412 * 54.15098 * 23 9 8 40 40 H 1.08996 * 109.47720 * 95.27568 * 26 25 2 41 41 H 1.09003 * 109.47115 * 215.27708 * 26 25 2 42 42 H 1.09000 * 109.46869 * 335.27076 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4954 1.4485 0.0000 4 6 3.9838 0.5139 0.0028 5 7 5.2673 0.8965 0.0047 6 6 6.2372 0.0122 0.0000 7 7 6.0038 -1.2881 -0.0060 8 6 4.7673 -1.7631 -0.0080 9 7 4.5387 -3.1273 -0.0147 10 6 4.5164 -3.6503 -1.3867 11 6 4.1183 -5.1278 -1.3644 12 6 5.1251 -5.9099 -0.5164 13 6 5.1643 -5.3144 0.8937 14 1 4.1848 -5.4194 1.3605 15 6 6.1953 -6.0404 1.7190 16 1 7.0298 -5.4988 2.1392 17 6 6.0732 -7.3963 1.9376 18 7 6.9731 -8.0300 2.6573 19 14 4.6293 -8.3331 1.2114 20 1 4.9934 -8.8351 -0.1379 21 1 4.2905 -9.4802 2.0915 22 1 3.4565 -7.4288 1.1034 23 6 5.5320 -3.8315 0.8060 24 6 3.6812 -0.8502 -0.0041 25 6 2.2503 -1.0895 -0.0055 26 6 1.6591 -2.4756 -0.0132 27 1 -0.3634 -0.0053 1.0276 28 1 -0.3633 0.8926 -0.5093 29 1 -0.3632 -0.8873 -0.5185 30 1 7.2600 0.3590 0.0012 31 1 3.7935 -3.0883 -1.9780 32 1 5.5066 -3.5477 -1.8306 33 1 4.1171 -5.5198 -2.3814 34 1 3.1224 -5.2300 -0.9332 35 1 6.1144 -5.8402 -0.9687 36 1 4.8213 -6.9553 -0.4619 37 1 6.8874 -8.9840 2.8109 38 1 6.5175 -3.7280 0.3519 39 1 5.5467 -3.4012 1.8073 40 1 1.6040 -2.8415 -1.0385 41 1 2.2879 -3.1422 0.5771 42 1 0.6577 -2.4459 0.4163 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596322942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:04 Heat of formation + Delta-G solvation = 71.012013 kcal Electronic energy + Delta-G solvation = -24792.922906 eV Core-core repulsion = 21478.295026 eV Total energy + Delta-G solvation = -3314.627881 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27603 -38.58624 -37.31354 -34.65285 -32.85779 -32.19914 -30.89198 -30.48591 -29.26242 -26.70756 -25.18595 -24.82759 -23.72457 -22.36003 -21.40010 -19.59378 -19.05824 -18.20434 -17.56770 -16.71204 -16.49616 -15.58773 -15.43027 -14.79479 -14.47526 -14.22953 -14.10379 -13.76397 -13.59075 -13.32208 -13.00702 -12.89153 -12.83046 -12.56035 -12.46275 -12.28975 -11.92345 -11.58136 -11.30675 -11.14076 -11.02003 -10.96405 -10.69408 -10.55396 -10.14477 -10.08152 -9.83604 -9.41614 -9.14902 -9.08099 -8.92033 -8.55836 -8.43490 -7.96199 -6.09753 -4.09668 0.37221 0.86559 1.02549 1.72115 2.05740 3.24516 3.35629 3.38041 3.56340 3.68057 4.14837 4.36821 4.38365 4.42218 4.71882 4.90957 5.10682 5.15964 5.23906 5.28376 5.30224 5.32099 5.53346 5.59630 5.62646 5.74314 5.79170 5.89811 5.98058 6.04896 6.08679 6.13964 6.19846 6.35818 6.50916 6.54769 6.63648 6.66874 6.83461 7.04270 7.14661 7.38074 7.52764 7.74328 8.04755 8.48284 8.93854 9.51792 11.03439 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.004154 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.473429 B = 6738.544207 C = 7528.022773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.190 4.190 3 S 0.143 5.857 4 C 0.094 3.906 5 N -0.509 5.509 6 C 0.326 3.674 7 N -0.551 5.551 8 C 0.418 3.582 9 N -0.487 5.487 10 C 0.073 3.927 11 C -0.119 4.119 12 C -0.125 4.125 13 C 0.022 3.978 14 H 0.036 0.964 15 C -0.514 4.514 16 H 0.074 0.926 17 C 0.072 3.928 18 N -0.900 5.900 19 Si 0.887 3.113 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.263 1.263 23 C 0.081 3.919 24 C -0.161 4.161 25 C -0.046 4.046 26 C -0.102 4.102 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.201 0.799 31 H 0.067 0.933 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.264 0.736 38 H 0.054 0.946 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.097 0.903 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 15.702 -8.728 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.305 4.305 3 S 0.403 5.597 4 C -0.157 4.157 5 N -0.226 5.226 6 C 0.033 3.967 7 N -0.270 5.270 8 C 0.171 3.829 9 N -0.208 5.208 10 C -0.053 4.053 11 C -0.157 4.157 12 C -0.163 4.163 13 C 0.002 3.998 14 H 0.054 0.946 15 C -0.553 4.553 16 H 0.092 0.908 17 C -0.130 4.130 18 N -0.538 5.538 19 Si 0.717 3.283 20 H -0.206 1.206 21 H -0.226 1.226 22 H -0.188 1.188 23 C -0.044 4.044 24 C -0.177 4.177 25 C -0.058 4.058 26 C -0.160 4.160 27 H 0.095 0.905 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.218 0.782 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.116 0.884 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.109 17.340 -8.451 22.775 hybrid contribution -0.125 -2.135 -0.554 2.210 sum -12.234 15.204 -9.005 21.492 Atomic orbital electron populations 1.20359 0.87079 1.03301 1.03055 1.23773 1.00272 0.95209 1.11268 1.84033 0.91019 1.06394 1.78272 1.23762 0.97413 0.94165 1.00347 1.68041 0.97799 1.39461 1.17320 1.24772 0.98524 0.83727 0.89687 1.68553 1.23239 1.17586 1.17645 1.20235 0.86099 0.91254 0.85300 1.59803 1.50266 0.97662 1.13106 1.22072 1.00541 0.96646 0.86013 1.21695 1.00842 0.93042 1.00087 1.22074 0.97867 0.98361 0.97957 1.19192 0.98278 0.89917 0.92373 0.94623 1.20932 1.09525 0.93375 1.31431 0.90805 1.24971 0.95799 0.97550 0.94656 1.69891 1.34961 1.09581 1.39352 0.86847 0.83942 0.79313 0.78188 1.20632 1.22568 1.18804 1.22196 0.91858 0.95151 0.95235 1.20228 0.94818 0.93355 1.09267 1.19341 0.89591 0.96987 0.99876 1.20732 1.00565 0.91668 1.03085 0.90459 0.91219 0.90040 0.78235 0.91435 0.93559 0.91932 0.91355 0.92108 0.93149 0.92620 0.92805 0.91399 0.91087 0.88399 0.91743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 9.65 36.01 0.35 -0.25 16 2 C -0.19 -2.09 6.38 -36.21 -0.23 -2.32 16 3 S 0.14 1.66 23.20 -107.50 -2.49 -0.83 16 4 C 0.09 1.40 7.69 -16.08 -0.12 1.28 16 5 N -0.51 -7.67 10.47 -13.32 -0.14 -7.81 16 6 C 0.33 4.68 12.27 -92.34 -1.13 3.55 16 7 N -0.55 -9.16 9.36 -13.43 -0.13 -9.28 16 8 C 0.42 6.95 5.64 -154.57 -0.87 6.08 16 9 N -0.49 -8.24 2.54 -172.54 -0.44 -8.68 16 10 C 0.07 1.11 5.31 -3.83 -0.02 1.09 16 11 C -0.12 -1.87 6.09 -26.65 -0.16 -2.04 16 12 C -0.13 -2.53 4.74 -26.60 -0.13 -2.65 16 13 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 14 H 0.04 0.83 7.19 -51.92 -0.37 0.46 16 15 C -0.51 -14.04 9.14 -34.44 -0.31 -14.36 16 16 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 17 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 18 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 19 Si 0.89 21.29 24.36 -169.99 -4.14 17.15 16 20 H -0.28 -6.52 6.89 56.52 0.39 -6.13 16 21 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.26 -5.98 6.53 56.52 0.37 -5.61 16 23 C 0.08 1.63 4.17 -3.84 -0.02 1.62 16 24 C -0.16 -2.46 6.06 -105.24 -0.64 -3.10 16 25 C -0.05 -0.60 5.96 -103.82 -0.62 -1.22 16 26 C -0.10 -1.19 9.03 36.00 0.33 -0.86 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.54 7.08 -51.93 -0.37 0.17 16 30 H 0.20 2.11 8.06 -52.49 -0.42 1.68 16 31 H 0.07 0.90 8.09 -51.93 -0.42 0.49 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.05 1.08 3.37 -51.93 -0.17 0.91 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.05 1.14 7.82 -51.93 -0.41 0.73 16 39 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 40 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 41 H 0.10 1.37 6.68 -51.93 -0.35 1.03 16 42 H 0.06 0.61 6.88 -51.93 -0.36 0.26 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -30.79 340.40 -11.13 -41.92 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.85 Total: -0.29 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -3.85 Total: -10.93 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.07 Total: -52.15 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.14 Total: 17.15 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.49 Total: -0.83 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.79 -11.13 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596322942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.930 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds