Wall clock time and date at job start Tue Mar 31 2020 11:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75356 * 124.30688 * 2 1 4 4 C 1.75752 * 92.18101 * 179.90726 * 3 2 1 5 5 N 1.33933 * 131.27390 * 180.02562 * 4 3 2 6 6 C 1.31253 * 121.04337 * 180.34122 * 5 4 3 7 7 N 1.32115 * 122.17822 * 359.96073 * 6 5 4 8 8 C 1.32453 * 121.19046 * 0.02562 * 7 6 5 9 9 N 1.38327 * 120.52600 * 179.97438 * 8 7 6 10 10 C 1.46842 * 110.99698 * 272.76185 * 9 8 7 11 11 C 1.53040 * 109.52432 * 185.84501 * 10 9 8 12 12 C 1.53124 * 109.27697 * 300.82177 * 11 10 9 13 13 C 1.53121 * 109.15831 * 57.64946 * 12 11 10 14 14 H 1.09008 * 109.50279 * 62.29280 * 13 12 11 15 15 C 1.50704 * 109.53632 * 182.38658 * 13 12 11 16 16 H 1.07994 * 120.00339 * 119.82283 * 15 13 12 17 17 C 1.37884 * 119.99848 * 299.82505 * 15 13 12 18 18 N 1.31504 * 119.99929 * 179.97438 * 17 15 13 19 19 Si 1.86803 * 119.99836 * 359.97438 * 17 15 13 20 20 H 1.48505 * 109.46815 * 89.99997 * 19 17 15 21 21 H 1.48498 * 109.47080 * 209.99753 * 19 17 15 22 22 H 1.48496 * 109.47383 * 329.99893 * 19 17 15 23 23 C 1.46842 * 111.00336 * 36.97566 * 9 8 7 24 24 C 1.39721 * 109.61940 * 0.33946 * 4 3 2 25 25 C 1.31893 * 124.30351 * 180.28667 * 2 1 3 26 26 C 1.50696 * 122.59614 * 0.03791 * 25 2 1 27 27 H 1.08998 * 109.47699 * 269.70633 * 1 2 3 28 28 H 1.09001 * 109.46856 * 29.71006 * 1 2 3 29 29 H 1.08996 * 109.46733 * 149.69989 * 1 2 3 30 30 H 1.08000 * 118.91246 * 179.97438 * 6 5 4 31 31 H 1.09000 * 109.46760 * 305.85481 * 10 9 8 32 32 H 1.08997 * 109.46560 * 65.83224 * 10 9 8 33 33 H 1.08991 * 109.50590 * 180.88289 * 11 10 9 34 34 H 1.09004 * 109.50613 * 60.75841 * 11 10 9 35 35 H 1.08999 * 109.52610 * 297.75081 * 12 11 10 36 36 H 1.08995 * 109.52509 * 177.55406 * 12 11 10 37 37 H 0.97004 * 120.00408 * 180.02562 * 18 17 15 38 38 H 1.08998 * 109.46424 * 294.17527 * 23 9 8 39 39 H 1.08999 * 109.46412 * 54.15098 * 23 9 8 40 40 H 1.08996 * 109.47720 * 95.27568 * 26 25 2 41 41 H 1.09003 * 109.47115 * 215.27708 * 26 25 2 42 42 H 1.09000 * 109.46869 * 335.27076 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4954 1.4485 0.0000 4 6 3.9838 0.5139 0.0028 5 7 5.2673 0.8965 0.0047 6 6 6.2372 0.0122 0.0000 7 7 6.0038 -1.2881 -0.0060 8 6 4.7673 -1.7631 -0.0080 9 7 4.5387 -3.1273 -0.0147 10 6 4.5164 -3.6503 -1.3867 11 6 4.1183 -5.1278 -1.3644 12 6 5.1251 -5.9099 -0.5164 13 6 5.1643 -5.3144 0.8937 14 1 4.1848 -5.4194 1.3605 15 6 6.1953 -6.0404 1.7190 16 1 7.0298 -5.4988 2.1392 17 6 6.0732 -7.3963 1.9376 18 7 6.9731 -8.0300 2.6573 19 14 4.6293 -8.3331 1.2114 20 1 4.9934 -8.8351 -0.1379 21 1 4.2905 -9.4802 2.0915 22 1 3.4565 -7.4288 1.1034 23 6 5.5320 -3.8315 0.8060 24 6 3.6812 -0.8502 -0.0041 25 6 2.2503 -1.0895 -0.0055 26 6 1.6591 -2.4756 -0.0132 27 1 -0.3634 -0.0053 1.0276 28 1 -0.3633 0.8926 -0.5093 29 1 -0.3632 -0.8873 -0.5185 30 1 7.2600 0.3590 0.0012 31 1 3.7935 -3.0883 -1.9780 32 1 5.5066 -3.5477 -1.8306 33 1 4.1171 -5.5198 -2.3814 34 1 3.1224 -5.2300 -0.9332 35 1 6.1144 -5.8402 -0.9687 36 1 4.8213 -6.9553 -0.4619 37 1 6.8874 -8.9840 2.8109 38 1 6.5175 -3.7280 0.3519 39 1 5.5467 -3.4012 1.8073 40 1 1.6040 -2.8415 -1.0385 41 1 2.2879 -3.1422 0.5771 42 1 0.6577 -2.4459 0.4163 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596322942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:03 Heat of formation + Delta-G solvation = 54.052037 kcal Electronic energy + Delta-G solvation = -24793.658346 eV Core-core repulsion = 21478.295026 eV Total energy + Delta-G solvation = -3315.363320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.42785 -39.98181 -38.25668 -36.18821 -34.50460 -33.47738 -32.19234 -32.02751 -30.10884 -27.77675 -26.97347 -26.07572 -24.90710 -23.61123 -22.94312 -20.81159 -20.36581 -19.45897 -18.90033 -18.42820 -17.57794 -17.01640 -16.62464 -16.08966 -15.81914 -15.67420 -15.38331 -14.95451 -14.80089 -14.69053 -14.41036 -14.20401 -13.85101 -13.71804 -13.57361 -13.33665 -12.93608 -12.86668 -12.71767 -12.63107 -12.40496 -12.11588 -11.98388 -11.83286 -11.78318 -11.60787 -11.50904 -11.08377 -10.93700 -10.65391 -10.42413 -10.04601 -9.66088 -8.96195 -8.28713 -6.34058 -0.68377 -0.30794 0.04622 0.78664 1.09577 1.33494 1.40032 1.51269 2.33520 2.35253 2.50764 3.06906 3.09821 3.25776 3.43062 3.61978 3.93072 3.96231 4.02276 4.19272 4.35041 4.37055 4.43321 4.46462 4.64150 4.71586 4.76224 4.79782 4.84384 4.89475 4.91359 4.96355 5.01405 5.08846 5.15981 5.20258 5.26103 5.39799 5.50675 5.62340 5.66572 5.74732 5.87625 6.04416 6.30252 6.72302 6.90728 7.31420 8.88422 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.004154 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.473429 B = 6738.544207 C = 7528.022773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.171 4.171 3 S 0.180 5.820 4 C 0.064 3.936 5 N -0.515 5.515 6 C 0.317 3.683 7 N -0.577 5.577 8 C 0.396 3.604 9 N -0.477 5.477 10 C 0.073 3.927 11 C -0.109 4.109 12 C -0.124 4.124 13 C 0.026 3.974 14 H 0.034 0.966 15 C -0.522 4.522 16 H 0.025 0.975 17 C 0.012 3.988 18 N -0.952 5.952 19 Si 0.953 3.047 20 H -0.263 1.263 21 H -0.302 1.302 22 H -0.237 1.237 23 C 0.101 3.899 24 C -0.167 4.167 25 C -0.073 4.073 26 C -0.096 4.096 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.229 0.771 31 H 0.095 0.905 32 H 0.036 0.964 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.266 0.734 38 H 0.034 0.966 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.230 16.784 -10.882 25.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.286 4.286 3 S 0.440 5.560 4 C -0.187 4.187 5 N -0.232 5.232 6 C 0.024 3.976 7 N -0.297 5.297 8 C 0.150 3.850 9 N -0.198 5.198 10 C -0.052 4.052 11 C -0.146 4.146 12 C -0.162 4.162 13 C 0.007 3.993 14 H 0.052 0.948 15 C -0.561 4.561 16 H 0.044 0.956 17 C -0.184 4.184 18 N -0.592 5.592 19 Si 0.779 3.221 20 H -0.189 1.189 21 H -0.230 1.230 22 H -0.160 1.160 23 C -0.026 4.026 24 C -0.183 4.183 25 C -0.084 4.084 26 C -0.155 4.155 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.245 0.755 31 H 0.113 0.887 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.052 0.948 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -16.075 18.466 -10.624 26.688 hybrid contribution 1.136 -2.279 0.183 2.553 sum -14.940 16.186 -10.441 24.376 Atomic orbital electron populations 1.20573 0.84156 1.04976 1.04380 1.24303 1.01993 0.94232 1.08120 1.83929 0.88962 1.06037 1.77036 1.24314 0.98326 0.95143 1.00885 1.68110 0.98248 1.39573 1.17314 1.25318 0.99779 0.83053 0.89408 1.68516 1.23777 1.18874 1.18489 1.20331 0.86840 0.91086 0.86770 1.59781 1.48354 0.97948 1.13735 1.22164 1.00853 0.96892 0.85301 1.21657 0.99681 0.92298 1.00999 1.21946 0.98971 0.98439 0.96800 1.19057 0.96172 0.90827 0.93283 0.94753 1.21243 1.09314 0.93771 1.31756 0.95617 1.25902 0.98943 0.98570 0.95031 1.70060 1.37602 1.10041 1.41534 0.85773 0.80792 0.77789 0.77712 1.18915 1.22995 1.16032 1.21723 0.91909 0.94255 0.94740 1.20437 0.95779 0.93184 1.08888 1.19471 0.88502 0.98346 1.02106 1.20698 1.01047 0.90271 1.03498 0.89123 0.89458 0.88474 0.75456 0.88659 0.94573 0.88637 0.90004 0.93299 0.93809 0.92540 0.94801 0.93729 0.89952 0.91031 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 9.65 71.24 0.69 -0.16 16 2 C -0.17 -3.17 6.38 24.85 0.16 -3.02 16 3 S 0.18 3.73 23.20 -56.49 -1.31 2.42 16 4 C 0.06 1.84 7.69 84.73 0.65 2.49 16 5 N -0.51 -15.32 10.47 -196.05 -2.05 -17.37 16 6 C 0.32 9.18 12.27 180.95 2.22 11.40 16 7 N -0.58 -19.66 9.36 -196.41 -1.84 -21.50 16 8 C 0.40 13.20 5.64 133.96 0.76 13.96 16 9 N -0.48 -16.02 2.54 -699.78 -1.78 -17.80 16 10 C 0.07 2.09 5.31 86.33 0.46 2.55 16 11 C -0.11 -3.09 6.09 30.65 0.19 -2.90 16 12 C -0.12 -4.86 4.74 30.68 0.15 -4.71 16 13 C 0.03 1.18 1.85 -11.49 -0.02 1.16 16 14 H 0.03 1.58 7.19 -2.38 -0.02 1.56 16 15 C -0.52 -29.98 9.14 25.60 0.23 -29.74 16 16 H 0.03 1.66 7.99 -2.91 -0.02 1.64 16 17 C 0.01 0.72 5.45 84.66 0.46 1.18 16 18 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 19 Si 0.95 43.79 24.36 68.60 1.67 45.46 16 20 H -0.26 -11.37 6.89 99.48 0.69 -10.69 16 21 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 22 H -0.24 -9.81 6.53 99.48 0.65 -9.16 16 23 C 0.10 4.22 4.17 86.33 0.36 4.58 16 24 C -0.17 -4.93 6.06 -20.27 -0.12 -5.06 16 25 C -0.07 -1.71 5.96 -18.94 -0.11 -1.82 16 26 C -0.10 -1.94 9.03 71.23 0.64 -1.30 16 27 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.10 0.78 7.08 -2.39 -0.02 0.76 16 30 H 0.23 4.80 8.06 -2.91 -0.02 4.78 16 31 H 0.10 2.25 8.09 -2.39 -0.02 2.23 16 32 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.04 1.77 3.37 -2.39 -0.01 1.77 16 37 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.03 1.52 7.82 -2.39 -0.02 1.50 16 39 H 0.04 2.02 8.10 -2.39 -0.02 2.01 16 40 H 0.08 1.43 8.12 -2.39 -0.02 1.41 16 41 H 0.07 1.86 6.68 -2.39 -0.02 1.84 16 42 H 0.09 1.31 6.88 -2.39 -0.02 1.30 16 Total: -1.00 -71.21 340.40 2.65 -68.55 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 0.96 Total: 11.27 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: 6.71 Total: -11.40 kcal Atomic # 7 Polarization: -110.94 SS G_CDS: -5.37 Total: -116.30 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.67 Total: 45.46 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.31 Total: 2.42 kcal Total: -71.21 2.65 -68.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596322942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.604 kcal (2) G-P(sol) polarization free energy of solvation -71.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds