Wall clock time and date at job start Tue Mar 31 2020 11:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.31887 * 124.30218 * 89.72690 * 3 2 1 5 5 C 1.45081 * 114.80736 * 179.87104 * 4 3 2 6 6 C 1.39752 * 111.99883 * 0.40111 * 5 4 3 7 7 N 1.33893 * 119.11018 * 179.79282 * 6 5 4 8 8 C 1.31283 * 121.04148 * 359.96225 * 7 6 5 9 9 N 1.32087 * 122.17684 * 0.04252 * 8 7 6 10 10 C 1.32476 * 121.19365 * 359.97438 * 9 8 7 11 11 N 1.38320 * 120.53191 * 179.97438 * 10 9 8 12 12 C 1.46845 * 111.00339 * 236.06755 * 11 10 9 13 13 C 1.53034 * 109.52827 * 185.83943 * 12 11 10 14 14 C 1.53122 * 109.27806 * 300.82598 * 13 12 11 15 15 C 1.53113 * 109.16316 * 57.64878 * 14 13 12 16 16 H 1.09000 * 109.50385 * 62.28606 * 15 14 13 17 17 C 1.50702 * 109.50559 * 182.40182 * 15 14 13 18 18 H 1.08001 * 119.99427 * 120.00341 * 17 15 14 19 19 C 1.37871 * 120.00416 * 300.00625 * 17 15 14 20 20 N 1.31514 * 119.99751 * 359.97438 * 19 17 15 21 21 Si 1.86791 * 120.00158 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47559 * 90.00155 * 21 19 17 23 23 H 1.48504 * 109.47264 * 209.99986 * 21 19 17 24 24 H 1.48502 * 109.47374 * 329.99814 * 21 19 17 25 25 C 1.46850 * 111.00265 * 0.28201 * 11 10 9 26 26 S 1.75356 * 124.30183 * 270.02598 * 3 2 1 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 32 32 H 1.07997 * 122.59501 * 0.02562 * 4 3 2 33 33 H 1.07998 * 118.91694 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.46297 * 305.85845 * 12 11 10 35 35 H 1.09007 * 109.46002 * 65.83419 * 12 11 10 36 36 H 1.08997 * 109.50230 * 60.76262 * 13 12 11 37 37 H 1.08997 * 109.50779 * 180.88470 * 13 12 11 38 38 H 1.08993 * 109.52356 * 177.56002 * 14 13 12 39 39 H 1.09002 * 109.52122 * 297.68465 * 14 13 12 40 40 H 0.97001 * 119.99969 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.45916 * 294.17476 * 25 11 10 42 42 H 1.09000 * 109.46218 * 54.14271 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2751 2.1234 1.0895 5 6 2.7559 3.4711 0.8502 6 6 2.8565 3.7565 -0.5142 7 7 3.2835 4.9664 -0.8968 8 6 3.6058 5.8815 -0.0124 9 7 3.5283 5.6614 1.2877 10 6 3.1170 4.4952 1.7628 11 7 3.0416 4.2793 3.1270 12 6 3.8343 3.1071 3.5190 13 6 3.6121 2.8126 5.0042 14 6 4.0290 4.0332 5.8295 15 6 3.2230 5.2507 5.3685 16 1 2.1625 5.0746 5.5488 17 6 3.6689 6.4691 6.1352 18 1 4.0753 7.3197 5.6082 19 6 3.5583 6.4978 7.5091 20 7 3.0630 5.4620 8.1506 21 14 4.1117 8.0077 8.4594 22 1 2.9732 8.9512 8.5964 23 1 4.5811 7.5994 9.8078 24 1 5.2208 8.6729 7.7296 25 6 3.4565 5.4744 3.8727 26 16 2.3610 2.3528 -1.4486 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.1298 1.7253 2.0828 33 1 3.9466 6.8459 -0.3592 34 1 3.5251 2.2452 2.9277 35 1 4.8912 3.3079 3.3429 36 1 2.5578 2.5982 5.1789 37 1 4.2127 1.9520 5.2986 38 1 3.8318 3.8441 6.8846 39 1 5.0926 4.2239 5.6861 40 1 2.9855 5.4820 9.1174 41 1 4.5150 5.6641 3.6948 42 1 2.8728 6.3320 3.5383 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596329949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:28 Heat of formation + Delta-G solvation = 62.234639 kcal Electronic energy + Delta-G solvation = -24215.165274 eV Core-core repulsion = 20900.156778 eV Total energy + Delta-G solvation = -3315.008496 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.14936 -38.40137 -36.98822 -34.46926 -33.58978 -32.59413 -31.06173 -30.12233 -28.72766 -25.61310 -24.91873 -24.63117 -22.88494 -22.46073 -21.53700 -20.46940 -18.95302 -18.20556 -17.38260 -16.44162 -16.20459 -15.45167 -15.20621 -14.69973 -14.63803 -14.44437 -14.08677 -13.97249 -13.79744 -13.19253 -13.09725 -12.88831 -12.60523 -12.42997 -11.95311 -11.81705 -11.70143 -11.53378 -11.04362 -10.97739 -10.94439 -10.87760 -10.70050 -10.68998 -10.25372 -9.96597 -9.62631 -9.29992 -9.17180 -9.08371 -8.79078 -8.46766 -8.34622 -7.84190 -6.03764 -4.09627 0.48365 1.07453 1.08954 1.76370 2.12802 3.29120 3.35867 3.39147 3.58424 3.87032 4.24667 4.33351 4.41027 4.60750 4.78043 4.88538 4.92926 5.03147 5.25149 5.29558 5.33431 5.46374 5.53703 5.54388 5.65335 5.72480 5.90805 5.93425 5.94659 6.13685 6.18252 6.29460 6.36840 6.44318 6.60373 6.69879 6.82574 7.06992 7.21477 7.30226 7.50202 7.69150 7.94210 8.05241 8.23335 8.38701 8.93602 9.55221 11.02635 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.003530 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.314249 B = 7931.112125 C = 8983.504355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.051 4.051 3 C -0.178 4.178 4 C -0.086 4.086 5 C -0.198 4.198 6 C 0.105 3.895 7 N -0.528 5.528 8 C 0.339 3.661 9 N -0.561 5.561 10 C 0.422 3.578 11 N -0.465 5.465 12 C 0.061 3.939 13 C -0.119 4.119 14 C -0.115 4.115 15 C 0.051 3.949 16 H 0.035 0.965 17 C -0.513 4.513 18 H 0.057 0.943 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.075 3.925 26 S 0.143 5.857 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.154 0.846 33 H 0.200 0.800 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.035 0.965 40 H 0.260 0.740 41 H 0.044 0.956 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 -11.097 -15.923 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.090 4.090 3 C -0.294 4.294 4 C -0.115 4.115 5 C -0.215 4.215 6 C -0.145 4.145 7 N -0.248 5.248 8 C 0.046 3.954 9 N -0.283 5.283 10 C 0.172 3.828 11 N -0.179 5.179 12 C -0.064 4.064 13 C -0.157 4.157 14 C -0.153 4.153 15 C 0.032 3.968 16 H 0.053 0.947 17 C -0.552 4.552 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.050 4.050 26 S 0.402 5.598 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.171 0.829 33 H 0.217 0.783 34 H 0.095 0.905 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.115 0.885 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.951 -10.759 -17.391 20.543 hybrid contribution 0.734 0.781 2.139 2.393 sum -1.217 -9.977 -15.252 18.266 Atomic orbital electron populations 1.21808 0.94104 1.02078 1.02777 1.20134 0.96367 0.89040 1.03497 1.23978 1.08468 1.01207 0.95732 1.20687 0.99924 0.91182 0.99741 1.20148 1.10606 0.96941 0.93798 1.23656 0.99396 0.97644 0.93816 1.68016 1.17430 1.00062 1.39272 1.24749 0.89753 0.97287 0.83606 1.68418 1.20025 1.22584 1.17270 1.20289 0.84773 0.87104 0.90587 1.58655 1.50490 1.09536 0.99267 1.22447 0.94611 0.90262 0.99042 1.21758 1.01847 0.99962 0.92155 1.21730 0.98229 0.93284 1.02039 1.18769 0.96906 0.94111 0.86976 0.94715 1.21075 1.41932 1.00646 0.91555 0.92503 1.24917 0.95034 0.96121 0.97686 1.69874 1.45407 1.29270 1.08236 0.86587 0.79005 0.83163 0.79214 1.20664 1.21264 1.19899 1.22435 0.98876 0.87938 0.95703 1.84009 1.68382 1.00948 1.06483 0.91994 0.92392 0.91922 0.89613 0.90594 0.82877 0.78325 0.90469 0.93786 0.91587 0.92327 0.88538 0.94651 0.92983 0.93791 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.89 37.16 0.37 -0.74 16 2 C -0.05 -0.40 6.37 -27.88 -0.18 -0.58 16 3 C -0.18 -1.95 5.64 -36.21 -0.20 -2.15 16 4 C -0.09 -1.11 8.74 -38.77 -0.34 -1.45 16 5 C -0.20 -3.13 5.74 -105.24 -0.60 -3.73 16 6 C 0.11 1.61 7.69 -16.09 -0.12 1.49 16 7 N -0.53 -8.29 10.47 -13.32 -0.14 -8.43 16 8 C 0.34 5.13 12.27 -92.34 -1.13 3.99 16 9 N -0.56 -9.91 8.80 -13.44 -0.12 -10.03 16 10 C 0.42 7.50 6.45 -154.57 -1.00 6.50 16 11 N -0.47 -8.66 4.66 -172.53 -0.80 -9.47 16 12 C 0.06 1.01 5.18 -3.84 -0.02 0.99 16 13 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 14 C -0.11 -2.55 5.02 -26.61 -0.13 -2.69 16 15 C 0.05 1.24 2.26 -91.70 -0.21 1.03 16 16 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.51 -13.75 8.56 -34.44 -0.29 -14.05 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.89 -24.61 11.35 55.43 0.63 -23.98 16 21 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.08 1.61 3.89 -3.83 -0.01 1.59 16 26 S 0.14 1.69 23.20 -107.50 -2.49 -0.80 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.15 1.84 6.52 -52.49 -0.34 1.50 16 33 H 0.20 2.22 8.06 -52.49 -0.42 1.80 16 34 H 0.08 1.08 4.56 -51.93 -0.24 0.84 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.10 2.41 6.15 -51.93 -0.32 2.09 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 42 H 0.08 1.70 7.73 -51.93 -0.40 1.29 16 LS Contribution 347.04 15.07 5.23 5.23 Total: -1.00 -29.19 347.04 -12.77 -41.96 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.91 Total: 0.02 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: -4.14 Total: -10.42 kcal Atomic # 7 Polarization: -51.48 SS G_CDS: -0.43 Total: -51.91 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.49 Total: -0.80 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.19 -12.77 -41.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.194 kcal (2) G-P(sol) polarization free energy of solvation -29.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds