Wall clock time and date at job start Tue Mar 31 2020 11:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.31887 * 124.30218 * 89.72690 * 3 2 1 5 5 C 1.45081 * 114.80736 * 179.87104 * 4 3 2 6 6 C 1.39752 * 111.99883 * 0.40111 * 5 4 3 7 7 N 1.33893 * 119.11018 * 179.79282 * 6 5 4 8 8 C 1.31283 * 121.04148 * 359.96225 * 7 6 5 9 9 N 1.32087 * 122.17684 * 0.04252 * 8 7 6 10 10 C 1.32476 * 121.19365 * 359.97438 * 9 8 7 11 11 N 1.38320 * 120.53191 * 179.97438 * 10 9 8 12 12 C 1.46845 * 111.00339 * 236.06755 * 11 10 9 13 13 C 1.53034 * 109.52827 * 185.83943 * 12 11 10 14 14 C 1.53122 * 109.27806 * 300.82598 * 13 12 11 15 15 C 1.53113 * 109.16316 * 57.64878 * 14 13 12 16 16 H 1.09000 * 109.50385 * 62.28606 * 15 14 13 17 17 C 1.50702 * 109.50559 * 182.40182 * 15 14 13 18 18 H 1.08001 * 119.99427 * 120.00341 * 17 15 14 19 19 C 1.37871 * 120.00416 * 300.00625 * 17 15 14 20 20 N 1.31514 * 119.99751 * 359.97438 * 19 17 15 21 21 Si 1.86791 * 120.00158 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47559 * 90.00155 * 21 19 17 23 23 H 1.48504 * 109.47264 * 209.99986 * 21 19 17 24 24 H 1.48502 * 109.47374 * 329.99814 * 21 19 17 25 25 C 1.46850 * 111.00265 * 0.28201 * 11 10 9 26 26 S 1.75356 * 124.30183 * 270.02598 * 3 2 1 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 29 29 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 32 32 H 1.07997 * 122.59501 * 0.02562 * 4 3 2 33 33 H 1.07998 * 118.91694 * 179.97438 * 8 7 6 34 34 H 1.08997 * 109.46297 * 305.85845 * 12 11 10 35 35 H 1.09007 * 109.46002 * 65.83419 * 12 11 10 36 36 H 1.08997 * 109.50230 * 60.76262 * 13 12 11 37 37 H 1.08997 * 109.50779 * 180.88470 * 13 12 11 38 38 H 1.08993 * 109.52356 * 177.56002 * 14 13 12 39 39 H 1.09002 * 109.52122 * 297.68465 * 14 13 12 40 40 H 0.97001 * 119.99969 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.45916 * 294.17476 * 25 11 10 42 42 H 1.09000 * 109.46218 * 54.14271 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2751 2.1234 1.0895 5 6 2.7559 3.4711 0.8502 6 6 2.8565 3.7565 -0.5142 7 7 3.2835 4.9664 -0.8968 8 6 3.6058 5.8815 -0.0124 9 7 3.5283 5.6614 1.2877 10 6 3.1170 4.4952 1.7628 11 7 3.0416 4.2793 3.1270 12 6 3.8343 3.1071 3.5190 13 6 3.6121 2.8126 5.0042 14 6 4.0290 4.0332 5.8295 15 6 3.2230 5.2507 5.3685 16 1 2.1625 5.0746 5.5488 17 6 3.6689 6.4691 6.1352 18 1 4.0753 7.3197 5.6082 19 6 3.5583 6.4978 7.5091 20 7 3.0630 5.4620 8.1506 21 14 4.1117 8.0077 8.4594 22 1 2.9732 8.9512 8.5964 23 1 4.5811 7.5994 9.8078 24 1 5.2208 8.6729 7.7296 25 6 3.4565 5.4744 3.8727 26 16 2.3610 2.3528 -1.4486 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 2.1298 1.7253 2.0828 33 1 3.9466 6.8459 -0.3592 34 1 3.5251 2.2452 2.9277 35 1 4.8912 3.3079 3.3429 36 1 2.5578 2.5982 5.1789 37 1 4.2127 1.9520 5.2986 38 1 3.8318 3.8441 6.8846 39 1 5.0926 4.2239 5.6861 40 1 2.9855 5.4820 9.1174 41 1 4.5150 5.6641 3.6948 42 1 2.8728 6.3320 3.5383 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596329949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:15:28 Heat of formation + Delta-G solvation = 47.747135 kcal Electronic energy + Delta-G solvation = -24215.793500 eV Core-core repulsion = 20900.156778 eV Total energy + Delta-G solvation = -3315.636721 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.38084 -39.87511 -37.94287 -36.12965 -34.61568 -34.12302 -32.43116 -31.87731 -29.77302 -27.29543 -26.26689 -25.88354 -24.06171 -23.71169 -23.04140 -21.48392 -20.62509 -19.47245 -18.69626 -18.14107 -17.33374 -16.87576 -16.50759 -16.29552 -15.86631 -15.56334 -15.49914 -15.00892 -14.79370 -14.68667 -14.45014 -14.30605 -13.96971 -13.74985 -13.49935 -12.89585 -12.77708 -12.64718 -12.60399 -12.49575 -12.32755 -12.17931 -11.97818 -11.87439 -11.81103 -11.61363 -11.43688 -11.05470 -10.78606 -10.42768 -10.31643 -10.29648 -9.58923 -8.99831 -8.10572 -6.23786 -0.61724 -0.17099 0.06818 0.78331 1.11201 1.41276 1.42423 1.52294 2.26181 2.45036 2.64588 3.15589 3.17272 3.29926 3.43634 3.71250 3.88693 3.99861 4.05203 4.23324 4.28179 4.39412 4.44203 4.46703 4.58757 4.72121 4.78848 4.82802 4.84149 4.94698 5.04080 5.06352 5.09924 5.10639 5.19157 5.29105 5.40972 5.42495 5.55347 5.61802 5.88715 5.98282 6.02102 6.13044 6.36612 6.85205 7.02897 7.43893 8.94371 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.020236 B = 0.003530 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.314249 B = 7931.112125 C = 8983.504355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.052 4.052 3 C -0.154 4.154 4 C -0.110 4.110 5 C -0.201 4.201 6 C 0.074 3.926 7 N -0.532 5.532 8 C 0.330 3.670 9 N -0.586 5.586 10 C 0.399 3.601 11 N -0.472 5.472 12 C 0.065 3.935 13 C -0.109 4.109 14 C -0.108 4.108 15 C 0.052 3.948 16 H 0.001 0.999 17 C -0.537 4.537 18 H 0.049 0.951 19 C 0.020 3.980 20 N -0.911 5.911 21 Si 0.953 3.047 22 H -0.277 1.277 23 H -0.280 1.280 24 H -0.271 1.271 25 C 0.099 3.901 26 S 0.187 5.813 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.163 0.837 33 H 0.231 0.769 34 H 0.110 0.890 35 H 0.040 0.960 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.027 0.973 40 H 0.262 0.738 41 H 0.032 0.968 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.646 -13.113 -17.544 21.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.092 4.092 3 C -0.271 4.271 4 C -0.139 4.139 5 C -0.218 4.218 6 C -0.176 4.176 7 N -0.251 5.251 8 C 0.037 3.963 9 N -0.309 5.309 10 C 0.151 3.849 11 N -0.187 5.187 12 C -0.060 4.060 13 C -0.146 4.146 14 C -0.146 4.146 15 C 0.033 3.967 16 H 0.019 0.981 17 C -0.576 4.576 18 H 0.067 0.933 19 C -0.180 4.180 20 N -0.550 5.550 21 Si 0.778 3.222 22 H -0.203 1.203 23 H -0.206 1.206 24 H -0.195 1.195 25 C -0.027 4.027 26 S 0.446 5.554 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.181 0.819 33 H 0.247 0.753 34 H 0.128 0.872 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.980 -12.783 -19.048 23.025 hybrid contribution 0.684 1.324 2.500 2.910 sum -1.296 -11.459 -16.549 20.170 Atomic orbital electron populations 1.21815 0.93628 1.03222 1.02097 1.20345 0.96598 0.86920 1.05314 1.24484 1.05533 1.02240 0.94807 1.20725 1.01951 0.90314 1.00930 1.20324 1.10210 0.97655 0.93573 1.24239 0.99990 0.98581 0.94784 1.68095 1.17241 1.00437 1.39349 1.25336 0.89640 0.98473 0.82815 1.68378 1.20793 1.23029 1.18722 1.20377 0.86139 0.88161 0.90242 1.58661 1.51391 1.08736 0.99944 1.22499 0.94314 0.90677 0.98467 1.21645 1.02104 0.98665 0.92230 1.21518 0.97312 0.94645 1.01111 1.18662 0.94935 0.94325 0.88795 0.98104 1.21408 1.42276 1.01510 0.92359 0.93304 1.25631 0.95089 0.98769 0.98484 1.69997 1.45927 1.30700 1.08421 0.85641 0.78617 0.79923 0.77981 1.20315 1.20573 1.19530 1.21914 0.97678 0.88947 0.94203 1.83903 1.66881 0.98707 1.05866 0.93095 0.92705 0.89945 0.87950 0.88640 0.81946 0.75319 0.87247 0.94188 0.91833 0.89214 0.91424 0.95451 0.92896 0.94935 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.89 71.98 0.71 -1.00 16 2 C -0.05 -0.61 6.37 29.85 0.19 -0.42 16 3 C -0.15 -2.90 5.64 24.86 0.14 -2.76 16 4 C -0.11 -2.61 8.74 23.20 0.20 -2.40 16 5 C -0.20 -6.14 5.74 -20.26 -0.12 -6.26 16 6 C 0.07 2.17 7.69 84.74 0.65 2.82 16 7 N -0.53 -16.29 10.47 -196.05 -2.05 -18.34 16 8 C 0.33 9.92 12.27 180.95 2.22 12.14 16 9 N -0.59 -21.13 8.80 -196.43 -1.73 -22.86 16 10 C 0.40 14.30 6.45 133.95 0.86 15.17 16 11 N -0.47 -17.87 4.66 -699.77 -3.26 -21.13 16 12 C 0.06 2.09 5.18 86.33 0.45 2.53 16 13 C -0.11 -3.77 6.09 30.65 0.19 -3.58 16 14 C -0.11 -4.93 5.02 30.67 0.15 -4.77 16 15 C 0.05 2.62 2.26 -11.49 -0.03 2.59 16 16 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 17 C -0.54 -29.92 8.56 25.60 0.22 -29.70 16 18 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 19 C 0.02 1.08 5.30 84.65 0.45 1.53 16 20 N -0.91 -51.77 11.35 21.44 0.24 -51.53 16 21 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 C 0.10 4.40 3.89 86.32 0.34 4.74 16 26 S 0.19 3.92 23.20 -56.49 -1.31 2.61 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.16 3.49 6.52 -2.91 -0.02 3.47 16 33 H 0.23 4.99 8.06 -2.91 -0.02 4.97 16 34 H 0.11 2.83 4.56 -2.39 -0.01 2.82 16 35 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 38 H 0.07 3.49 6.15 -2.39 -0.01 3.48 16 39 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.03 1.49 8.12 -2.39 -0.02 1.47 16 42 H 0.06 2.73 7.73 -2.39 -0.02 2.71 16 Total: -1.00 -65.56 347.04 1.58 -63.98 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.03 Total: 10.93 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: 6.63 Total: -9.36 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -6.80 Total: -113.86 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 3.92 SS G_CDS: -1.31 Total: 2.61 kcal Total: -65.56 1.58 -63.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596329949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.731 kcal (2) G-P(sol) polarization free energy of solvation -65.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds