Wall clock time and date at job start Tue Mar 31 2020 11:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31892 * 122.59085 * 2 1 4 4 S 1.75359 * 111.38588 * 180.02562 * 3 2 1 5 5 C 1.75757 * 92.18316 * 359.97438 * 4 3 2 6 6 N 1.33921 * 131.27041 * 180.02562 * 5 4 3 7 7 C 1.31260 * 121.03914 * 180.02562 * 6 5 4 8 8 C 1.50706 * 118.91104 * 180.02562 * 7 6 5 9 9 N 1.32111 * 122.17983 * 359.71868 * 7 6 5 10 10 C 1.32454 * 121.18893 * 0.57262 * 9 7 6 11 11 N 1.38320 * 120.53028 * 179.70963 * 10 9 7 12 12 C 1.46846 * 111.00473 * 298.80378 * 11 10 9 13 13 C 1.53035 * 109.52536 * 185.83918 * 12 11 10 14 14 C 1.53126 * 109.27671 * 300.82148 * 13 12 11 15 15 C 1.53115 * 109.15880 * 57.65459 * 14 13 12 16 16 H 1.09001 * 109.50557 * 62.28594 * 15 14 13 17 17 C 1.50702 * 109.50359 * 182.40149 * 15 14 13 18 18 H 1.08003 * 120.00017 * 119.79775 * 17 15 14 19 19 C 1.37877 * 120.00242 * 299.80866 * 17 15 14 20 20 N 1.31506 * 120.00396 * 179.97438 * 19 17 15 21 21 Si 1.86811 * 119.99696 * 359.97438 * 19 17 15 22 22 H 1.48498 * 109.46726 * 90.00690 * 21 19 17 23 23 H 1.48496 * 109.46833 * 210.00352 * 21 19 17 24 24 H 1.48498 * 109.47058 * 330.00694 * 21 19 17 25 25 C 1.46846 * 110.99712 * 63.01660 * 11 10 9 26 26 C 1.39723 * 109.61486 * 0.02562 * 5 4 3 27 27 H 1.08995 * 109.47285 * 264.54298 * 1 2 3 28 28 H 1.09002 * 109.47148 * 24.54553 * 1 2 3 29 29 H 1.09004 * 109.46847 * 144.54696 * 1 2 3 30 30 H 1.07998 * 124.31022 * 0.02562 * 3 2 1 31 31 H 1.08997 * 109.47249 * 90.00203 * 8 7 6 32 32 H 1.08997 * 109.46774 * 210.00445 * 8 7 6 33 33 H 1.09007 * 109.46941 * 330.00129 * 8 7 6 34 34 H 1.09003 * 109.46565 * 305.85638 * 12 11 10 35 35 H 1.09004 * 109.46056 * 65.83568 * 12 11 10 36 36 H 1.09001 * 109.50446 * 60.76137 * 13 12 11 37 37 H 1.08997 * 109.50250 * 180.88557 * 13 12 11 38 38 H 1.09003 * 109.52227 * 177.55768 * 14 13 12 39 39 H 1.08999 * 109.51986 * 297.68663 * 14 13 12 40 40 H 0.97006 * 120.00613 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.46661 * 294.17537 * 25 11 10 42 42 H 1.08997 * 109.46613 * 54.14440 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1112 0.0000 4 16 3.9375 0.7705 -0.0007 5 6 3.6619 -0.9653 -0.0003 6 7 4.5175 -1.9956 0.0000 7 6 4.0847 -3.2348 -0.0002 8 6 5.0899 -4.3577 0.0007 9 7 2.7971 -3.5303 0.0049 10 6 1.8750 -2.5795 -0.0009 11 7 0.5306 -2.9044 -0.0015 12 6 0.1760 -3.6756 -1.1998 13 6 -1.3386 -3.8913 -1.2396 14 6 -1.7756 -4.6422 0.0213 15 6 -1.3516 -3.8413 1.2555 16 1 -1.8559 -2.8750 1.2531 17 6 -1.7256 -4.6018 2.5016 18 1 -0.9595 -4.9027 3.2010 19 6 -3.0456 -4.9137 2.7489 20 7 -3.3719 -5.5778 3.8361 21 14 -4.3707 -4.3929 1.5395 22 1 -4.5660 -5.4628 0.5283 23 1 -5.6437 -4.1629 2.2688 24 1 -3.9558 -3.1394 0.8601 25 6 0.1633 -3.6271 1.2230 26 6 2.2885 -1.2222 -0.0002 27 1 -0.3633 -0.0977 1.0229 28 1 -0.3633 0.9348 -0.4269 29 1 -0.3633 -0.8372 -0.5961 30 1 1.7937 2.1046 0.0004 31 1 5.3315 -4.6283 1.0286 32 1 4.6695 -5.2220 -0.5134 33 1 5.9958 -4.0347 -0.5125 34 1 0.4884 -3.1286 -2.0894 35 1 0.6797 -4.6419 -1.1720 36 1 -1.8427 -2.9258 -1.2812 37 1 -1.5997 -4.4771 -2.1209 38 1 -2.8592 -4.7600 0.0180 39 1 -1.3025 -5.6240 0.0428 40 1 -4.3007 -5.7969 4.0103 41 1 0.6672 -4.5935 1.2394 42 1 0.4665 -3.0448 2.0931 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596330581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:50 Heat of formation + Delta-G solvation = 72.630659 kcal Electronic energy + Delta-G solvation = -24847.510255 eV Core-core repulsion = 21532.952564 eV Total energy + Delta-G solvation = -3314.557691 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.31746 -38.60456 -36.95700 -34.69466 -32.76781 -32.26146 -30.93592 -30.44612 -28.52518 -27.59792 -25.10953 -24.93652 -23.48896 -22.12685 -21.35341 -19.90163 -19.07520 -18.50860 -17.59758 -16.66415 -16.05267 -15.58345 -15.36321 -14.59849 -14.37320 -14.20685 -13.84203 -13.67218 -13.56587 -13.27780 -13.06712 -12.67134 -12.61894 -12.51529 -12.46458 -12.31038 -12.07935 -11.48933 -11.27603 -11.13641 -11.05456 -11.02942 -10.72958 -10.53845 -10.13332 -10.10145 -9.82745 -9.44087 -9.13869 -9.05716 -8.91674 -8.56575 -8.37196 -8.05777 -6.10852 -4.11057 0.37121 0.84908 1.05750 1.78162 2.11125 3.24714 3.35694 3.38028 3.57131 3.60365 3.94666 4.35044 4.37755 4.48706 4.71195 5.03918 5.18509 5.27713 5.32842 5.38618 5.45488 5.51866 5.54253 5.60603 5.68702 5.86268 5.87863 5.93669 6.00900 6.10268 6.13000 6.15011 6.24021 6.37296 6.47560 6.57057 6.68458 6.69782 6.85714 7.04033 7.12113 7.41751 7.51930 7.73655 8.02722 8.46360 8.91850 9.50639 11.02257 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016898 B = 0.004347 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.623360 B = 6439.209850 C = 7141.745734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.035 4.035 3 C -0.224 4.224 4 S 0.141 5.859 5 C 0.097 3.903 6 N -0.503 5.503 7 C 0.345 3.655 8 C -0.082 4.082 9 N -0.548 5.548 10 C 0.422 3.578 11 N -0.492 5.492 12 C 0.068 3.932 13 C -0.118 4.118 14 C -0.124 4.124 15 C 0.024 3.976 16 H 0.038 0.962 17 C -0.515 4.515 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.900 5.900 21 Si 0.887 3.113 22 H -0.279 1.279 23 H -0.298 1.298 24 H -0.263 1.263 25 C 0.084 3.916 26 C -0.164 4.164 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.175 0.825 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.060 0.940 40 H 0.264 0.736 41 H 0.048 0.952 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.208 10.435 -11.330 19.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.047 4.047 3 C -0.357 4.357 4 S 0.400 5.600 5 C -0.154 4.154 6 N -0.221 5.221 7 C 0.072 3.928 8 C -0.141 4.141 9 N -0.267 5.267 10 C 0.177 3.823 11 N -0.216 5.216 12 C -0.058 4.058 13 C -0.156 4.156 14 C -0.162 4.162 15 C 0.005 3.995 16 H 0.056 0.944 17 C -0.554 4.554 18 H 0.091 0.909 19 C -0.129 4.129 20 N -0.538 5.538 21 Si 0.717 3.283 22 H -0.206 1.206 23 H -0.226 1.226 24 H -0.187 1.187 25 C -0.041 4.041 26 C -0.179 4.179 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.192 0.808 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.066 0.934 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 13.775 11.031 -11.221 20.913 hybrid contribution -2.144 -0.735 -0.445 2.310 sum 11.630 10.296 -11.665 19.426 Atomic orbital electron populations 1.20672 0.88022 1.03022 1.03977 1.19507 0.97937 0.89194 0.98068 1.24981 0.95828 1.02529 1.12388 1.84062 1.04928 0.93014 1.77985 1.23858 0.91740 0.99851 0.99997 1.67865 1.37973 0.98642 1.17649 1.23049 0.89568 0.90582 0.89574 1.20577 0.95676 0.93736 1.04095 1.68425 1.02627 1.38208 1.17464 1.20252 0.90161 0.87102 0.84830 1.60228 1.08261 1.47214 1.05928 1.22054 0.97375 0.96168 0.90209 1.21675 0.93740 1.01130 0.99048 1.22062 0.99926 0.99625 0.94574 1.19166 0.90022 0.96476 0.93857 0.94421 1.20919 0.93914 1.35677 1.04853 0.90920 1.24962 0.98451 0.94372 0.95125 1.69891 1.18303 1.39664 1.25909 0.86845 0.80899 0.79760 0.80783 1.20624 1.22572 1.18740 1.22221 0.99086 0.95577 0.87197 1.20324 0.93312 0.94971 1.09280 0.90270 0.92068 0.88951 0.80808 0.89397 0.89394 0.89675 0.91882 0.93131 0.91553 0.92071 0.93204 0.92136 0.92600 0.93396 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 9.58 36.00 0.35 -0.89 16 2 C -0.04 -0.47 5.96 -103.82 -0.62 -1.09 16 3 C -0.22 -2.49 10.75 28.83 0.31 -2.18 16 4 S 0.14 1.66 23.23 -107.50 -2.50 -0.84 16 5 C 0.10 1.48 7.69 -16.09 -0.12 1.36 16 6 N -0.50 -7.86 10.36 -9.47 -0.10 -7.95 16 7 C 0.34 5.20 7.64 -157.37 -1.20 4.00 16 8 C -0.08 -0.88 10.31 36.01 0.37 -0.51 16 9 N -0.55 -9.22 9.75 -9.59 -0.09 -9.32 16 10 C 0.42 7.17 5.36 -154.58 -0.83 6.34 16 11 N -0.49 -8.44 2.54 -172.53 -0.44 -8.88 16 12 C 0.07 1.08 5.26 -3.84 -0.02 1.06 16 13 C -0.12 -1.92 6.09 -26.65 -0.16 -2.08 16 14 C -0.12 -2.53 4.74 -26.61 -0.13 -2.66 16 15 C 0.02 0.54 1.85 -91.69 -0.17 0.37 16 16 H 0.04 0.87 7.19 -51.93 -0.37 0.49 16 17 C -0.52 -13.99 9.14 -34.44 -0.31 -14.30 16 18 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 19 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 20 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 21 Si 0.89 21.25 24.36 -169.99 -4.14 17.11 16 22 H -0.28 -6.53 6.89 56.52 0.39 -6.14 16 23 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.26 -5.94 6.53 56.52 0.37 -5.57 16 25 C 0.08 1.69 4.50 -3.83 -0.02 1.67 16 26 C -0.16 -2.58 6.06 -105.24 -0.64 -3.22 16 27 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.09 1.28 6.69 -51.93 -0.35 0.93 16 30 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.90 8.10 -51.93 -0.42 0.48 16 35 H 0.05 0.83 8.04 -51.93 -0.42 0.42 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 1.08 3.37 -51.93 -0.17 0.90 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.05 1.02 8.06 -51.93 -0.42 0.60 16 42 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -30.51 344.11 -10.58 -41.09 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -5.97 Total: 0.06 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -3.29 Total: -10.18 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: 0.14 Total: -52.41 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.14 Total: 17.11 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -2.50 Total: -0.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.51 -10.58 -41.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.718 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds