Wall clock time and date at job start Tue Mar 31 2020 11:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.31892 * 122.59085 * 2 1 4 4 S 1.75359 * 111.38588 * 180.02562 * 3 2 1 5 5 C 1.75757 * 92.18316 * 359.97438 * 4 3 2 6 6 N 1.33921 * 131.27041 * 180.02562 * 5 4 3 7 7 C 1.31260 * 121.03914 * 180.02562 * 6 5 4 8 8 C 1.50706 * 118.91104 * 180.02562 * 7 6 5 9 9 N 1.32111 * 122.17983 * 359.71868 * 7 6 5 10 10 C 1.32454 * 121.18893 * 0.57262 * 9 7 6 11 11 N 1.38320 * 120.53028 * 179.70963 * 10 9 7 12 12 C 1.46846 * 111.00473 * 298.80378 * 11 10 9 13 13 C 1.53035 * 109.52536 * 185.83918 * 12 11 10 14 14 C 1.53126 * 109.27671 * 300.82148 * 13 12 11 15 15 C 1.53115 * 109.15880 * 57.65459 * 14 13 12 16 16 H 1.09001 * 109.50557 * 62.28594 * 15 14 13 17 17 C 1.50702 * 109.50359 * 182.40149 * 15 14 13 18 18 H 1.08003 * 120.00017 * 119.79775 * 17 15 14 19 19 C 1.37877 * 120.00242 * 299.80866 * 17 15 14 20 20 N 1.31506 * 120.00396 * 179.97438 * 19 17 15 21 21 Si 1.86811 * 119.99696 * 359.97438 * 19 17 15 22 22 H 1.48498 * 109.46726 * 90.00690 * 21 19 17 23 23 H 1.48496 * 109.46833 * 210.00352 * 21 19 17 24 24 H 1.48498 * 109.47058 * 330.00694 * 21 19 17 25 25 C 1.46846 * 110.99712 * 63.01660 * 11 10 9 26 26 C 1.39723 * 109.61486 * 0.02562 * 5 4 3 27 27 H 1.08995 * 109.47285 * 264.54298 * 1 2 3 28 28 H 1.09002 * 109.47148 * 24.54553 * 1 2 3 29 29 H 1.09004 * 109.46847 * 144.54696 * 1 2 3 30 30 H 1.07998 * 124.31022 * 0.02562 * 3 2 1 31 31 H 1.08997 * 109.47249 * 90.00203 * 8 7 6 32 32 H 1.08997 * 109.46774 * 210.00445 * 8 7 6 33 33 H 1.09007 * 109.46941 * 330.00129 * 8 7 6 34 34 H 1.09003 * 109.46565 * 305.85638 * 12 11 10 35 35 H 1.09004 * 109.46056 * 65.83568 * 12 11 10 36 36 H 1.09001 * 109.50446 * 60.76137 * 13 12 11 37 37 H 1.08997 * 109.50250 * 180.88557 * 13 12 11 38 38 H 1.09003 * 109.52227 * 177.55768 * 14 13 12 39 39 H 1.08999 * 109.51986 * 297.68663 * 14 13 12 40 40 H 0.97006 * 120.00613 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.46661 * 294.17537 * 25 11 10 42 42 H 1.08997 * 109.46613 * 54.14440 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1112 0.0000 4 16 3.9375 0.7705 -0.0007 5 6 3.6619 -0.9653 -0.0003 6 7 4.5175 -1.9956 0.0000 7 6 4.0847 -3.2348 -0.0002 8 6 5.0899 -4.3577 0.0007 9 7 2.7971 -3.5303 0.0049 10 6 1.8750 -2.5795 -0.0009 11 7 0.5306 -2.9044 -0.0015 12 6 0.1760 -3.6756 -1.1998 13 6 -1.3386 -3.8913 -1.2396 14 6 -1.7756 -4.6422 0.0213 15 6 -1.3516 -3.8413 1.2555 16 1 -1.8559 -2.8750 1.2531 17 6 -1.7256 -4.6018 2.5016 18 1 -0.9595 -4.9027 3.2010 19 6 -3.0456 -4.9137 2.7489 20 7 -3.3719 -5.5778 3.8361 21 14 -4.3707 -4.3929 1.5395 22 1 -4.5660 -5.4628 0.5283 23 1 -5.6437 -4.1629 2.2688 24 1 -3.9558 -3.1394 0.8601 25 6 0.1633 -3.6271 1.2230 26 6 2.2885 -1.2222 -0.0002 27 1 -0.3633 -0.0977 1.0229 28 1 -0.3633 0.9348 -0.4269 29 1 -0.3633 -0.8372 -0.5961 30 1 1.7937 2.1046 0.0004 31 1 5.3315 -4.6283 1.0286 32 1 4.6695 -5.2220 -0.5134 33 1 5.9958 -4.0347 -0.5125 34 1 0.4884 -3.1286 -2.0894 35 1 0.6797 -4.6419 -1.1720 36 1 -1.8427 -2.9258 -1.2812 37 1 -1.5997 -4.4771 -2.1209 38 1 -2.8592 -4.7600 0.0180 39 1 -1.3025 -5.6240 0.0428 40 1 -4.3007 -5.7969 4.0103 41 1 0.6672 -4.5935 1.2394 42 1 0.4665 -3.0448 2.0931 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596330581.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:49 Heat of formation + Delta-G solvation = 55.147281 kcal Electronic energy + Delta-G solvation = -24848.268391 eV Core-core repulsion = 21532.952564 eV Total energy + Delta-G solvation = -3315.315827 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.47966 -40.02405 -37.97201 -36.23422 -34.48518 -33.48178 -32.27231 -32.08152 -29.48807 -28.62566 -27.01280 -26.26343 -24.65868 -23.41276 -22.94119 -20.99460 -20.56552 -19.61750 -19.13441 -18.39790 -17.29251 -16.79235 -16.70485 -16.05913 -15.80501 -15.61951 -15.18104 -14.84525 -14.72078 -14.62395 -14.55772 -14.27060 -13.83832 -13.64035 -13.56168 -13.30400 -13.07134 -12.94167 -12.85243 -12.66409 -12.35774 -12.16306 -11.99912 -11.97062 -11.80782 -11.65345 -11.49499 -11.09989 -10.94245 -10.66354 -10.44827 -9.98630 -9.76692 -9.02968 -8.29010 -6.34417 -0.71944 -0.34669 0.05147 0.82348 1.10898 1.34145 1.40163 1.51457 2.32832 2.35066 2.42299 2.91142 3.06822 3.18768 3.45879 3.60763 3.91581 3.97530 4.04868 4.18412 4.36623 4.41517 4.45506 4.57089 4.63219 4.66557 4.68869 4.71439 4.74614 4.86483 4.90746 4.92273 4.96342 5.08665 5.15566 5.18776 5.22882 5.37662 5.54702 5.58530 5.66759 5.71834 5.84509 6.07391 6.29002 6.71601 6.87258 7.31196 8.88000 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.016898 B = 0.004347 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.623360 B = 6439.209850 C = 7141.745734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.063 4.063 3 C -0.200 4.200 4 S 0.189 5.811 5 C 0.066 3.934 6 N -0.510 5.510 7 C 0.328 3.672 8 C -0.078 4.078 9 N -0.568 5.568 10 C 0.399 3.601 11 N -0.481 5.481 12 C 0.070 3.930 13 C -0.108 4.108 14 C -0.123 4.123 15 C 0.029 3.971 16 H 0.039 0.961 17 C -0.522 4.522 18 H 0.025 0.975 19 C 0.014 3.986 20 N -0.951 5.951 21 Si 0.952 3.048 22 H -0.265 1.265 23 H -0.302 1.302 24 H -0.236 1.236 25 C 0.103 3.897 26 C -0.175 4.175 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.213 0.787 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.048 0.952 40 H 0.266 0.734 41 H 0.026 0.974 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.355 13.078 -14.174 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.075 4.075 3 C -0.333 4.333 4 S 0.448 5.552 5 C -0.185 4.185 6 N -0.228 5.228 7 C 0.056 3.944 8 C -0.136 4.136 9 N -0.288 5.288 10 C 0.153 3.847 11 N -0.205 5.205 12 C -0.057 4.057 13 C -0.146 4.146 14 C -0.161 4.161 15 C 0.009 3.991 16 H 0.057 0.943 17 C -0.560 4.560 18 H 0.044 0.956 19 C -0.183 4.183 20 N -0.592 5.592 21 Si 0.778 3.222 22 H -0.191 1.191 23 H -0.230 1.230 24 H -0.159 1.159 25 C -0.023 4.023 26 C -0.190 4.190 27 H 0.081 0.919 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.230 0.770 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.121 0.879 34 H 0.104 0.896 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.110 0.890 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.959 13.687 -14.089 24.098 hybrid contribution -2.011 -1.481 0.531 2.553 sum 11.949 12.206 -13.558 21.808 Atomic orbital electron populations 1.20614 0.87528 1.04045 1.02962 1.19599 0.98456 0.88912 1.00523 1.25480 0.95466 1.03526 1.08820 1.83945 1.05001 0.89760 1.76480 1.24454 0.91905 1.01691 1.00443 1.67960 1.38146 0.98975 1.17747 1.23752 0.89651 0.91610 0.89338 1.20694 0.95366 0.92676 1.04910 1.68402 1.03518 1.38736 1.18112 1.20352 0.89871 0.87995 0.86438 1.60152 1.09093 1.46332 1.04908 1.22111 0.97219 0.95935 0.90396 1.21632 0.93685 1.01521 0.97732 1.21942 0.99307 0.99265 0.95565 1.19030 0.91390 0.95877 0.92766 0.94300 1.21215 0.93079 1.35698 1.06029 0.95636 1.25870 1.01070 0.94309 0.97014 1.70055 1.18959 1.41728 1.28422 0.85794 0.77102 0.80784 0.78523 1.19128 1.22951 1.15939 1.21769 0.97483 0.94546 0.88502 1.20582 0.94134 0.95209 1.09090 0.91857 0.89062 0.90369 0.77044 0.88612 0.88795 0.87852 0.89569 0.94163 0.90323 0.88986 0.93832 0.93348 0.92523 0.95562 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.12 9.58 71.23 0.68 -1.43 16 2 C -0.06 -1.56 5.96 -18.95 -0.11 -1.67 16 3 C -0.20 -3.70 10.75 66.99 0.72 -2.98 16 4 S 0.19 3.89 23.23 -56.49 -1.31 2.58 16 5 C 0.07 1.94 7.69 84.73 0.65 2.59 16 6 N -0.51 -15.60 10.36 -183.87 -1.90 -17.50 16 7 C 0.33 9.89 7.64 138.82 1.06 10.95 16 8 C -0.08 -1.63 10.31 71.24 0.73 -0.90 16 9 N -0.57 -19.40 9.75 -184.25 -1.80 -21.20 16 10 C 0.40 13.56 5.36 133.97 0.72 14.28 16 11 N -0.48 -16.41 2.54 -699.75 -1.78 -18.18 16 12 C 0.07 2.09 5.26 86.33 0.45 2.55 16 13 C -0.11 -3.20 6.09 30.65 0.19 -3.02 16 14 C -0.12 -4.88 4.74 30.67 0.15 -4.74 16 15 C 0.03 1.30 1.85 -11.49 -0.02 1.28 16 16 H 0.04 1.76 7.19 -2.39 -0.02 1.74 16 17 C -0.52 -29.67 9.14 25.60 0.23 -29.44 16 18 H 0.03 1.63 7.99 -2.91 -0.02 1.61 16 19 C 0.01 0.83 5.45 84.66 0.46 1.29 16 20 N -0.95 -59.52 13.96 21.45 0.30 -59.22 16 21 Si 0.95 43.66 24.36 68.60 1.67 45.33 16 22 H -0.27 -11.53 6.89 99.48 0.69 -10.85 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.24 -9.75 6.53 99.48 0.65 -9.10 16 25 C 0.10 4.31 4.50 86.33 0.39 4.70 16 26 C -0.17 -5.36 6.06 -20.26 -0.12 -5.48 16 27 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.09 1.48 8.09 -2.39 -0.02 1.46 16 29 H 0.08 2.00 6.69 -2.39 -0.02 1.99 16 30 H 0.21 2.25 8.06 -2.91 -0.02 2.22 16 31 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.09 2.24 8.10 -2.39 -0.02 2.22 16 35 H 0.04 1.30 8.04 -2.38 -0.02 1.28 16 36 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.04 1.78 3.37 -2.39 -0.01 1.77 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 41 H 0.03 1.18 8.06 -2.39 -0.02 1.16 16 42 H 0.05 2.10 8.10 -2.39 -0.02 2.08 16 Total: -1.00 -70.06 344.11 2.31 -67.75 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.95 Total: 12.47 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 6.18 Total: -12.02 kcal Atomic # 7 Polarization: -110.93 SS G_CDS: -5.18 Total: -116.11 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.67 Total: 45.33 kcal Atomic # 16 Polarization: 3.89 SS G_CDS: -1.31 Total: 2.58 kcal Total: -70.06 2.31 -67.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330581.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.897 kcal (2) G-P(sol) polarization free energy of solvation -70.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds