Wall clock time and date at job start Tue Mar 31 2020 11:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47357 * 2 1 4 4 N 1.31294 * 118.90779 * 89.99441 * 3 2 1 5 5 C 1.33904 * 121.03819 * 180.02562 * 4 3 2 6 6 S 1.75748 * 131.27949 * 179.97438 * 5 4 3 7 7 C 1.75361 * 92.18324 * 180.02562 * 6 5 4 8 8 C 1.31883 * 111.39196 * 0.26527 * 7 6 5 9 9 C 1.39753 * 119.10382 * 359.97438 * 5 4 3 10 10 C 1.41846 * 117.54521 * 0.02619 * 9 5 4 11 11 N 1.38325 * 120.52517 * 179.97438 * 10 9 5 12 12 C 1.46844 * 111.00672 * 55.79032 * 11 10 9 13 13 C 1.53036 * 109.52412 * 185.83811 * 12 11 10 14 14 C 1.53115 * 109.28063 * 300.81562 * 13 12 11 15 15 C 1.53125 * 109.15687 * 57.65787 * 14 13 12 16 16 H 1.08990 * 109.50697 * 62.28457 * 15 14 13 17 17 C 1.50706 * 109.50282 * 182.40811 * 15 14 13 18 18 H 1.07995 * 120.00433 * 119.80093 * 17 15 14 19 19 C 1.37880 * 119.99513 * 299.80236 * 17 15 14 20 20 N 1.31511 * 120.00152 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99679 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47397 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47162 * 119.99936 * 21 19 17 24 24 H 1.48508 * 109.46921 * 239.99649 * 21 19 17 25 25 C 1.46852 * 110.99506 * 179.97438 * 11 10 9 26 26 N 1.32083 * 118.91033 * 270.02216 * 3 2 1 27 27 H 1.08998 * 109.47465 * 299.99893 * 1 2 3 28 28 H 1.09005 * 109.46524 * 60.00110 * 1 2 3 29 29 H 1.09005 * 109.47406 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47465 * 240.00107 * 2 1 3 31 31 H 1.09010 * 109.46964 * 120.00055 * 2 1 3 32 32 H 1.08002 * 124.30028 * 179.97438 * 7 6 5 33 33 H 1.07995 * 122.59299 * 179.70961 * 8 7 6 34 34 H 1.09005 * 109.45618 * 305.85180 * 12 11 10 35 35 H 1.08995 * 109.46627 * 65.81932 * 12 11 10 36 36 H 1.09001 * 109.50412 * 180.87299 * 13 12 11 37 37 H 1.09002 * 109.53554 * 60.78227 * 13 12 11 38 38 H 1.08999 * 109.52649 * 297.75478 * 14 13 12 39 39 H 1.09000 * 109.58023 * 177.58979 * 14 13 12 40 40 H 0.97003 * 120.00123 * 180.02562 * 20 19 17 41 41 H 1.08995 * 109.46731 * 294.17322 * 25 11 10 42 42 H 1.08999 * 109.46238 * 54.14898 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2438 2.0192 1.1493 5 6 2.6894 3.2809 1.1991 6 16 3.0585 4.3273 2.5621 7 6 3.5247 5.6486 1.5075 8 6 3.4016 5.3166 0.2371 9 6 2.9311 3.9641 0.0042 10 6 2.6861 3.2709 -1.2089 11 7 2.9040 3.8884 -2.4273 12 6 4.2820 4.3859 -2.5263 13 6 4.4449 5.1869 -3.8201 14 6 4.1202 4.2874 -5.0159 15 6 2.6968 3.7438 -4.8639 16 1 1.9884 4.5720 -4.8696 17 6 2.3901 2.8103 -6.0066 18 1 2.1400 1.7785 -5.8088 19 6 2.4288 3.2736 -7.3046 20 7 2.7328 4.5302 -7.5455 21 14 2.0479 2.1168 -8.7210 22 1 1.7374 0.7663 -8.1873 23 1 0.8791 2.6307 -9.4792 24 1 3.2251 2.0337 -9.6225 25 6 2.5852 2.9843 -3.5398 26 7 2.2448 2.0229 -1.1562 27 1 -0.3634 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 3.8646 6.6133 1.8544 33 1 3.6360 5.9977 -0.5675 34 1 4.4986 5.0276 -1.6722 35 1 4.9730 3.5431 -2.5316 36 1 5.4719 5.5430 -3.9009 37 1 3.7644 6.0384 -3.8098 38 1 4.8256 3.4571 -5.0493 39 1 4.1931 4.8646 -5.9376 40 1 2.7597 4.8563 -8.4587 41 1 3.2844 2.1482 -3.5402 42 1 1.5691 2.6079 -3.4221 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596330870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:30 Heat of formation + Delta-G solvation = 65.405451 kcal Electronic energy + Delta-G solvation = -24445.153344 eV Core-core repulsion = 21130.282345 eV Total energy + Delta-G solvation = -3314.870999 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.22110 -38.50157 -36.47691 -34.55503 -33.21369 -32.74084 -31.09935 -30.16862 -28.85515 -25.64310 -24.84308 -24.65957 -23.17969 -21.86467 -21.25063 -20.85298 -18.96394 -18.42301 -17.47296 -16.32539 -15.83086 -15.38291 -15.26586 -14.72362 -14.47415 -14.34407 -14.05842 -13.91935 -13.51095 -13.28337 -12.98818 -12.77627 -12.61246 -12.43768 -11.95680 -11.74954 -11.61425 -11.16934 -11.11824 -11.02634 -10.90887 -10.90374 -10.71319 -10.66737 -10.24157 -9.97210 -9.63401 -9.31391 -9.18111 -9.07361 -8.78757 -8.47116 -8.35271 -7.85462 -6.04119 -4.09841 0.49289 1.09975 1.12028 1.80193 2.15342 3.27609 3.35976 3.40012 3.54992 3.81121 4.04389 4.39819 4.51595 4.58024 4.84649 5.02712 5.21148 5.26399 5.28198 5.31484 5.35549 5.46521 5.59110 5.70231 5.83014 5.87596 5.93880 5.99226 6.05549 6.13895 6.25825 6.29868 6.37996 6.44397 6.60556 6.71369 6.82636 7.07840 7.21918 7.31620 7.50191 7.69138 7.94032 8.05055 8.26465 8.38709 8.93669 9.55055 11.02396 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.004042 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.611468 B = 6926.198655 C = 8463.490010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.052 4.052 3 C 0.366 3.634 4 N -0.525 5.525 5 C 0.111 3.889 6 S 0.139 5.861 7 C -0.216 4.216 8 C -0.080 4.080 9 C -0.211 4.211 10 C 0.425 3.575 11 N -0.465 5.465 12 C 0.061 3.939 13 C -0.119 4.119 14 C -0.115 4.115 15 C 0.051 3.949 16 H 0.035 0.965 17 C -0.512 4.512 18 H 0.057 0.943 19 C 0.064 3.936 20 N -0.889 5.889 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.076 3.924 26 N -0.555 5.555 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.174 0.826 33 H 0.155 0.845 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.035 0.965 39 H 0.096 0.904 40 H 0.260 0.740 41 H 0.043 0.957 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.179 -0.210 17.482 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.092 4.092 3 C 0.093 3.907 4 N -0.245 5.245 5 C -0.140 4.140 6 S 0.396 5.604 7 C -0.350 4.350 8 C -0.110 4.110 9 C -0.227 4.227 10 C 0.176 3.824 11 N -0.179 5.179 12 C -0.064 4.064 13 C -0.157 4.157 14 C -0.153 4.153 15 C 0.032 3.968 16 H 0.053 0.947 17 C -0.551 4.551 18 H 0.075 0.925 19 C -0.138 4.138 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.211 1.211 25 C -0.049 4.049 26 N -0.278 5.278 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.191 0.809 33 H 0.173 0.827 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.563 -0.667 18.807 18.884 hybrid contribution 0.493 0.025 -2.299 2.351 sum 2.057 -0.642 16.509 16.649 Atomic orbital electron populations 1.21677 0.93458 1.02383 1.02566 1.20350 0.96836 0.87841 1.04153 1.22991 0.88860 0.96616 0.82211 1.67843 1.18759 1.07795 1.30084 1.23695 0.98586 0.95172 0.96545 1.84055 1.68419 1.02777 1.05178 1.25105 1.10017 1.03446 0.96432 1.20797 0.99187 0.93961 0.97085 1.20205 1.11808 0.96763 0.93955 1.20276 0.86242 0.86089 0.89808 1.58684 1.23523 1.35139 1.00543 1.22455 0.84324 0.99017 1.00606 1.21756 1.00442 0.99190 0.94334 1.21732 0.98423 0.97768 0.97367 1.18781 0.93651 0.95412 0.88938 0.94698 1.21111 1.46891 0.96469 0.90639 0.92454 1.24920 0.95028 0.95062 0.98750 1.69884 1.48752 1.14094 1.20053 0.86540 0.77933 0.81215 0.82354 1.19727 1.21017 1.21067 1.22432 1.01134 0.92679 0.88672 1.68252 1.21101 1.08463 1.29972 0.92498 0.91978 0.91468 0.88858 0.89337 0.80865 0.82741 0.90441 0.93784 0.92320 0.91569 0.94659 0.88559 0.93037 0.93825 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.89 37.15 0.37 -1.23 16 2 C -0.05 -0.65 6.36 -27.89 -0.18 -0.83 16 3 C 0.37 5.92 6.89 -157.37 -1.08 4.83 16 4 N -0.52 -8.55 10.36 -9.47 -0.10 -8.65 16 5 C 0.11 1.72 7.69 -16.08 -0.12 1.60 16 6 S 0.14 1.62 23.23 -107.50 -2.50 -0.88 16 7 C -0.22 -2.26 11.02 28.83 0.32 -1.94 16 8 C -0.08 -1.02 8.91 -38.77 -0.35 -1.37 16 9 C -0.21 -3.37 5.74 -105.24 -0.60 -3.97 16 10 C 0.43 7.69 6.46 -154.57 -1.00 6.70 16 11 N -0.46 -8.71 4.66 -172.52 -0.80 -9.51 16 12 C 0.06 1.01 5.17 -3.84 -0.02 0.99 16 13 C -0.12 -2.11 6.09 -26.65 -0.16 -2.27 16 14 C -0.11 -2.56 5.03 -26.61 -0.13 -2.69 16 15 C 0.05 1.23 2.26 -91.68 -0.21 1.03 16 16 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 17 C -0.51 -13.70 8.56 -34.44 -0.29 -14.00 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 20 N -0.89 -24.60 11.36 55.43 0.63 -23.97 16 21 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 C 0.08 1.62 3.89 -3.82 -0.01 1.60 16 26 N -0.56 -10.11 8.69 -9.59 -0.08 -10.19 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.16 1.79 6.50 -52.49 -0.34 1.45 16 34 H 0.08 1.08 4.54 -51.93 -0.24 0.84 16 35 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.10 2.41 6.16 -51.93 -0.32 2.09 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.04 0.96 8.12 -51.93 -0.42 0.54 16 42 H 0.08 1.70 7.72 -51.93 -0.40 1.30 16 LS Contribution 347.02 15.07 5.23 5.23 Total: -1.00 -29.21 347.02 -12.13 -41.34 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.91 Total: 0.69 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -3.58 Total: -9.92 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.36 Total: -52.33 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 1.62 SS G_CDS: -2.50 Total: -0.88 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.21 -12.13 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.748 kcal (2) G-P(sol) polarization free energy of solvation -29.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds