Wall clock time and date at job start Tue Mar 31 2020 11:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47357 * 2 1 4 4 N 1.31294 * 118.90779 * 89.99441 * 3 2 1 5 5 C 1.33904 * 121.03819 * 180.02562 * 4 3 2 6 6 S 1.75748 * 131.27949 * 179.97438 * 5 4 3 7 7 C 1.75361 * 92.18324 * 180.02562 * 6 5 4 8 8 C 1.31883 * 111.39196 * 0.26527 * 7 6 5 9 9 C 1.39753 * 119.10382 * 359.97438 * 5 4 3 10 10 C 1.41846 * 117.54521 * 0.02619 * 9 5 4 11 11 N 1.38325 * 120.52517 * 179.97438 * 10 9 5 12 12 C 1.46844 * 111.00672 * 55.79032 * 11 10 9 13 13 C 1.53036 * 109.52412 * 185.83811 * 12 11 10 14 14 C 1.53115 * 109.28063 * 300.81562 * 13 12 11 15 15 C 1.53125 * 109.15687 * 57.65787 * 14 13 12 16 16 H 1.08990 * 109.50697 * 62.28457 * 15 14 13 17 17 C 1.50706 * 109.50282 * 182.40811 * 15 14 13 18 18 H 1.07995 * 120.00433 * 119.80093 * 17 15 14 19 19 C 1.37880 * 119.99513 * 299.80236 * 17 15 14 20 20 N 1.31511 * 120.00152 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99679 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47397 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47162 * 119.99936 * 21 19 17 24 24 H 1.48508 * 109.46921 * 239.99649 * 21 19 17 25 25 C 1.46852 * 110.99506 * 179.97438 * 11 10 9 26 26 N 1.32083 * 118.91033 * 270.02216 * 3 2 1 27 27 H 1.08998 * 109.47465 * 299.99893 * 1 2 3 28 28 H 1.09005 * 109.46524 * 60.00110 * 1 2 3 29 29 H 1.09005 * 109.47406 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47465 * 240.00107 * 2 1 3 31 31 H 1.09010 * 109.46964 * 120.00055 * 2 1 3 32 32 H 1.08002 * 124.30028 * 179.97438 * 7 6 5 33 33 H 1.07995 * 122.59299 * 179.70961 * 8 7 6 34 34 H 1.09005 * 109.45618 * 305.85180 * 12 11 10 35 35 H 1.08995 * 109.46627 * 65.81932 * 12 11 10 36 36 H 1.09001 * 109.50412 * 180.87299 * 13 12 11 37 37 H 1.09002 * 109.53554 * 60.78227 * 13 12 11 38 38 H 1.08999 * 109.52649 * 297.75478 * 14 13 12 39 39 H 1.09000 * 109.58023 * 177.58979 * 14 13 12 40 40 H 0.97003 * 120.00123 * 180.02562 * 20 19 17 41 41 H 1.08995 * 109.46731 * 294.17322 * 25 11 10 42 42 H 1.08999 * 109.46238 * 54.14898 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2438 2.0192 1.1493 5 6 2.6894 3.2809 1.1991 6 16 3.0585 4.3273 2.5621 7 6 3.5247 5.6486 1.5075 8 6 3.4016 5.3166 0.2371 9 6 2.9311 3.9641 0.0042 10 6 2.6861 3.2709 -1.2089 11 7 2.9040 3.8884 -2.4273 12 6 4.2820 4.3859 -2.5263 13 6 4.4449 5.1869 -3.8201 14 6 4.1202 4.2874 -5.0159 15 6 2.6968 3.7438 -4.8639 16 1 1.9884 4.5720 -4.8696 17 6 2.3901 2.8103 -6.0066 18 1 2.1400 1.7785 -5.8088 19 6 2.4288 3.2736 -7.3046 20 7 2.7328 4.5302 -7.5455 21 14 2.0479 2.1168 -8.7210 22 1 1.7374 0.7663 -8.1873 23 1 0.8791 2.6307 -9.4792 24 1 3.2251 2.0337 -9.6225 25 6 2.5852 2.9843 -3.5398 26 7 2.2448 2.0229 -1.1562 27 1 -0.3634 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8901 32 1 3.8646 6.6133 1.8544 33 1 3.6360 5.9977 -0.5675 34 1 4.4986 5.0276 -1.6722 35 1 4.9730 3.5431 -2.5316 36 1 5.4719 5.5430 -3.9009 37 1 3.7644 6.0384 -3.8098 38 1 4.8256 3.4571 -5.0493 39 1 4.1931 4.8646 -5.9376 40 1 2.7597 4.8563 -8.4587 41 1 3.2844 2.1482 -3.5402 42 1 1.5691 2.6079 -3.4221 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596330870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:30 Heat of formation + Delta-G solvation = 49.661732 kcal Electronic energy + Delta-G solvation = -24445.836043 eV Core-core repulsion = 21130.282345 eV Total energy + Delta-G solvation = -3315.553698 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.45306 -39.97366 -37.54335 -36.17444 -34.50487 -34.12838 -32.58066 -31.90581 -29.99328 -27.30219 -26.29845 -25.94603 -24.45816 -23.39772 -22.53241 -21.94665 -20.63090 -19.57744 -18.96011 -18.08758 -17.06685 -16.71067 -16.54449 -16.29947 -15.88111 -15.54708 -15.42649 -14.93415 -14.78515 -14.76187 -14.44971 -14.22630 -14.07381 -13.71594 -13.49314 -12.89727 -12.79657 -12.74772 -12.60864 -12.58444 -12.23462 -12.12135 -12.02197 -11.93092 -11.85191 -11.76863 -11.45004 -11.06151 -10.79595 -10.44538 -10.35046 -10.30914 -9.59857 -9.00174 -8.11149 -6.24249 -0.61590 -0.15224 0.10257 0.85869 1.15996 1.39744 1.42176 1.53326 2.23733 2.44004 2.58633 2.92487 3.16819 3.30792 3.48331 3.69713 3.96574 4.00419 4.04775 4.25042 4.29696 4.33129 4.39761 4.44599 4.55316 4.67442 4.75698 4.84209 4.91256 4.94485 4.96811 5.02577 5.05103 5.08860 5.11378 5.20782 5.28987 5.41499 5.55059 5.61462 5.89797 5.98598 6.01368 6.12362 6.36175 6.84819 7.04617 7.43507 8.94103 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.004042 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.611468 B = 6926.198655 C = 8463.490010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.051 4.051 3 C 0.348 3.652 4 N -0.529 5.529 5 C 0.075 3.925 6 S 0.187 5.813 7 C -0.184 4.184 8 C -0.107 4.107 9 C -0.215 4.215 10 C 0.401 3.599 11 N -0.471 5.471 12 C 0.064 3.936 13 C -0.109 4.109 14 C -0.108 4.108 15 C 0.052 3.948 16 H 0.001 0.999 17 C -0.536 4.536 18 H 0.048 0.952 19 C 0.020 3.980 20 N -0.912 5.912 21 Si 0.952 3.048 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.278 1.278 25 C 0.100 3.900 26 N -0.582 5.582 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.218 0.782 33 H 0.168 0.832 34 H 0.112 0.888 35 H 0.039 0.961 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.026 0.974 39 H 0.067 0.933 40 H 0.262 0.738 41 H 0.031 0.969 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 0.574 19.761 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.090 4.090 3 C 0.076 3.924 4 N -0.249 5.249 5 C -0.175 4.175 6 S 0.445 5.555 7 C -0.318 4.318 8 C -0.137 4.137 9 C -0.232 4.232 10 C 0.152 3.848 11 N -0.186 5.186 12 C -0.060 4.060 13 C -0.146 4.146 14 C -0.146 4.146 15 C 0.033 3.967 16 H 0.019 0.981 17 C -0.574 4.574 18 H 0.066 0.934 19 C -0.179 4.179 20 N -0.551 5.551 21 Si 0.778 3.222 22 H -0.195 1.195 23 H -0.206 1.206 24 H -0.203 1.203 25 C -0.026 4.026 26 N -0.305 5.305 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.234 0.766 33 H 0.185 0.815 34 H 0.130 0.870 35 H 0.057 0.943 36 H 0.108 0.892 37 H 0.082 0.918 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.049 0.951 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.468 0.115 21.121 21.265 hybrid contribution 0.212 -0.162 -2.837 2.850 sum 2.680 -0.046 18.284 18.480 Atomic orbital electron populations 1.21633 0.92625 1.03763 1.01306 1.20481 0.97432 0.86106 1.04988 1.23582 0.89173 0.97851 0.81816 1.67924 1.18607 1.08398 1.29929 1.24366 0.99148 0.95456 0.98512 1.83970 1.66881 1.01517 1.03174 1.25665 1.06492 1.04387 0.95252 1.20867 1.01373 0.92827 0.98585 1.20455 1.11414 0.98248 0.93043 1.20406 0.87535 0.86739 0.90113 1.58703 1.25025 1.34806 1.00076 1.22519 0.83250 0.99120 1.01136 1.21646 1.02184 0.98099 0.92717 1.21522 0.96832 0.97844 0.98404 1.18667 0.94038 0.94127 0.89835 0.98096 1.21426 1.47357 0.96564 0.92081 0.93362 1.25630 0.94834 0.96510 1.00960 1.70004 1.49134 1.15368 1.20579 0.85590 0.77885 0.79344 0.79355 1.19490 1.20587 1.20329 1.21897 0.99629 0.92329 0.88767 1.68211 1.21685 1.09198 1.31405 0.92732 0.94134 0.88740 0.88938 0.87440 0.76551 0.81523 0.87007 0.94299 0.89175 0.91762 0.95485 0.91425 0.92895 0.95087 0.92604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.89 71.98 0.71 -2.30 16 2 C -0.05 -1.26 6.36 29.85 0.19 -1.07 16 3 C 0.35 11.42 6.89 138.81 0.96 12.37 16 4 N -0.53 -16.96 10.36 -183.87 -1.90 -18.87 16 5 C 0.08 2.24 7.69 84.74 0.65 2.89 16 6 S 0.19 3.73 23.23 -56.49 -1.31 2.41 16 7 C -0.18 -3.01 11.02 66.99 0.74 -2.27 16 8 C -0.11 -2.41 8.91 23.20 0.21 -2.20 16 9 C -0.21 -6.62 5.74 -20.26 -0.12 -6.74 16 10 C 0.40 14.71 6.46 133.95 0.86 15.57 16 11 N -0.47 -18.03 4.66 -699.75 -3.26 -21.29 16 12 C 0.06 2.07 5.17 86.33 0.45 2.52 16 13 C -0.11 -3.78 6.09 30.64 0.19 -3.59 16 14 C -0.11 -4.95 5.03 30.67 0.15 -4.80 16 15 C 0.05 2.66 2.26 -11.48 -0.03 2.63 16 16 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 17 C -0.54 -29.92 8.56 25.60 0.22 -29.71 16 18 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 19 C 0.02 1.10 5.30 84.66 0.45 1.55 16 20 N -0.91 -51.85 11.36 21.45 0.24 -51.60 16 21 Si 0.95 43.69 29.54 68.60 2.03 45.72 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 C 0.10 4.51 3.89 86.33 0.34 4.84 16 26 N -0.58 -21.95 8.69 -184.27 -1.60 -23.55 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 30 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.22 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.17 3.30 6.50 -2.91 -0.02 3.28 16 34 H 0.11 2.86 4.54 -2.38 -0.01 2.84 16 35 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 3.50 6.16 -2.39 -0.01 3.48 16 40 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.03 1.44 8.12 -2.39 -0.02 1.42 16 42 H 0.06 2.68 7.72 -2.39 -0.02 2.66 16 Total: -1.00 -66.83 347.02 1.19 -65.64 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 1.03 Total: 11.83 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 5.97 Total: -10.30 kcal Atomic # 7 Polarization: -108.79 SS G_CDS: -6.52 Total: -115.31 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.31 Total: 2.41 kcal Total: -66.83 1.19 -65.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596330870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.303 kcal (2) G-P(sol) polarization free energy of solvation -66.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds