Wall clock time and date at job start Tue Mar 31 2020 11:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.70627 * 2 1 4 4 O 1.21285 * 120.00375 * 262.06421 * 3 2 1 5 5 N 1.34779 * 120.00139 * 82.33178 * 3 2 1 6 6 C 1.46492 * 120.00330 * 174.78427 * 5 3 2 7 7 C 1.52999 * 109.47366 * 184.95853 * 6 5 3 8 8 C 1.50701 * 115.55439 * 303.73882 * 7 6 5 9 9 H 1.08000 * 120.00301 * 144.03235 * 8 7 6 10 10 C 1.37879 * 119.99780 * 324.04293 * 8 7 6 11 11 N 1.31511 * 119.99636 * 3.53079 * 10 8 7 12 12 Si 1.86797 * 119.99856 * 183.53632 * 10 8 7 13 13 H 1.48505 * 109.47007 * 64.99708 * 12 10 8 14 14 H 1.48501 * 109.47037 * 184.99116 * 12 10 8 15 15 H 1.48491 * 109.47382 * 304.99305 * 12 10 8 16 16 C 1.53003 * 117.50252 * 158.06417 * 7 6 5 17 17 C 1.53001 * 117.49671 * 89.40498 * 7 6 5 18 18 C 1.53466 * 109.74016 * 239.39797 * 2 1 3 19 19 O 1.43190 * 108.22731 * 180.54874 * 18 2 1 20 20 C 1.36106 * 116.69319 * 46.27120 * 19 18 2 21 21 C 1.38702 * 119.38994 * 162.87797 * 20 19 18 22 22 C 1.38198 * 120.06142 * 179.69350 * 21 20 19 23 23 C 1.38251 * 120.11707 * 359.97438 * 22 21 20 24 24 C 1.38196 * 120.11110 * 0.06473 * 23 22 21 25 25 C 1.38710 * 120.06946 * 359.97438 * 24 23 22 26 26 O 1.36100 * 119.39994 * 179.86375 * 25 24 23 27 27 H 1.09005 * 109.47326 * 59.99612 * 1 2 3 28 28 H 1.08997 * 109.47365 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47317 * 300.00354 * 1 2 3 30 30 H 0.97004 * 119.99360 * 354.79374 * 5 3 2 31 31 H 1.09002 * 109.47558 * 304.95800 * 6 5 3 32 32 H 1.09006 * 109.47247 * 64.96201 * 6 5 3 33 33 H 0.97006 * 119.99842 * 185.01246 * 11 10 8 34 34 H 1.09009 * 117.49383 * 0.02562 * 16 7 6 35 35 H 1.08996 * 117.50006 * 145.02247 * 16 7 6 36 36 H 1.09004 * 117.50114 * 214.97848 * 17 7 6 37 37 H 1.09004 * 117.50190 * 0.02562 * 17 7 6 38 38 H 1.08999 * 109.71441 * 300.24753 * 18 2 1 39 39 H 1.08997 * 109.71112 * 60.87971 * 18 2 1 40 40 H 1.07997 * 119.96917 * 359.71418 * 21 20 19 41 41 H 1.08005 * 119.94476 * 180.02562 * 22 21 20 42 42 H 1.07993 * 119.94978 * 180.02562 * 23 22 21 43 43 H 1.07997 * 119.96763 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0381 1.4187 0.0000 4 8 2.3792 1.9408 -1.0403 5 7 2.1187 2.1057 1.1568 6 6 2.7184 3.4421 1.1748 7 6 2.7986 3.9457 2.6173 8 6 1.4922 3.9790 3.3678 9 1 1.4689 3.7456 4.4220 10 6 0.3266 4.3072 2.7085 11 7 0.3434 4.5233 1.4114 12 14 -1.2763 4.4451 3.6578 13 1 -1.1875 5.5748 4.6176 14 1 -2.3935 4.6874 2.7100 15 1 -1.5220 3.1828 4.4003 16 6 3.8193 5.0427 2.9270 17 6 4.0621 3.6116 3.4130 18 6 2.0483 -0.7353 -1.2433 19 8 3.4797 -0.7273 -1.2041 20 6 4.0607 -1.0560 -0.0181 21 6 5.4002 -1.4152 0.0073 22 6 6.0058 -1.7454 1.2048 23 6 5.2789 -1.7183 2.3805 24 6 3.9437 -1.3621 2.3620 25 6 3.3295 -1.0303 1.1634 26 8 2.0132 -0.6843 1.1606 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.7797 1.7150 1.9774 31 1 3.7211 3.3962 0.7498 32 1 2.1048 4.1237 0.5856 33 1 -0.4602 4.8249 0.9595 34 1 4.4334 5.4059 2.1028 35 1 3.5460 5.7882 3.6737 36 1 3.9484 3.4163 4.4793 37 1 4.8363 3.0334 2.9087 38 1 1.6860 -1.7633 -1.2402 39 1 1.7025 -0.2258 -2.1426 40 1 5.9705 -1.4365 -0.9096 41 1 7.0490 -2.0244 1.2225 42 1 5.7550 -1.9765 3.3148 43 1 3.3782 -1.3413 3.2818 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599872917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:56 Heat of formation + Delta-G solvation = -51.657521 kcal Electronic energy + Delta-G solvation = -28087.037807 eV Core-core repulsion = 24292.044954 eV Total energy + Delta-G solvation = -3794.992853 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47703 -38.82303 -37.42291 -37.12887 -36.57033 -33.03434 -32.74743 -32.21051 -30.54803 -29.01144 -26.66866 -26.29813 -25.47569 -23.62107 -22.58370 -21.71917 -21.20037 -19.38537 -19.15500 -18.57793 -17.65401 -16.80086 -16.39141 -15.48708 -15.33775 -15.21072 -14.83449 -14.73323 -14.42829 -14.08233 -13.90779 -13.75674 -13.48203 -13.29093 -12.78594 -12.68894 -12.57705 -12.18928 -11.85257 -11.77878 -11.67914 -11.51699 -11.38691 -11.10992 -11.01540 -10.79247 -10.53735 -10.28285 -10.24426 -9.75061 -9.18978 -8.96859 -8.88248 -8.50990 -8.31496 -7.92873 -7.87113 -6.03439 -4.23585 1.39061 1.42218 2.89759 3.19838 3.26735 3.27884 3.28823 3.41686 3.79385 3.91268 4.26073 4.29011 4.68546 4.87573 4.92333 5.06167 5.10533 5.27415 5.36945 5.37635 5.47670 5.49223 5.56775 5.67080 5.70335 5.96597 6.01144 6.09633 6.22545 6.30038 6.30979 6.52376 6.53561 6.62221 6.69470 6.71815 6.87831 7.02302 7.08063 7.24890 7.49457 7.55024 7.59910 7.95318 8.28225 8.48209 8.78337 9.05130 9.39887 10.85449 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.005341 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.870504 B = 5240.729110 C = 5978.014412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.060 3.940 3 C 0.492 3.508 4 O -0.546 6.546 5 N -0.663 5.663 6 C 0.161 3.839 7 C 0.036 3.964 8 C -0.494 4.494 9 H 0.061 0.939 10 C 0.073 3.927 11 N -0.870 5.870 12 Si 0.893 3.107 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.275 1.275 16 C -0.197 4.197 17 C -0.209 4.209 18 C 0.052 3.948 19 O -0.295 6.295 20 C 0.056 3.944 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.108 4.108 25 C 0.053 3.947 26 O -0.292 6.292 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.403 0.597 31 H 0.020 0.980 32 H 0.120 0.880 33 H 0.263 0.737 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.128 0.872 40 H 0.131 0.869 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.958 -13.127 -1.604 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.018 3.982 3 C 0.274 3.726 4 O -0.425 6.425 5 N -0.309 5.309 6 C 0.039 3.961 7 C 0.035 3.965 8 C -0.531 4.531 9 H 0.079 0.921 10 C -0.130 4.130 11 N -0.507 5.507 12 Si 0.721 3.279 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.236 4.236 17 C -0.247 4.247 18 C -0.024 4.024 19 O -0.209 6.209 20 C 0.011 3.989 21 C -0.138 4.138 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.126 4.126 25 C 0.008 3.992 26 O -0.207 6.207 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.238 0.762 31 H 0.038 0.962 32 H 0.137 0.863 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.146 0.854 40 H 0.149 0.851 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.006 -12.713 -2.529 13.568 hybrid contribution -1.105 0.166 0.943 1.462 sum 2.901 -12.548 -1.586 12.976 Atomic orbital electron populations 1.21717 0.88691 1.03722 1.05053 1.22886 0.98046 0.90930 0.86357 1.20194 0.80237 0.87068 0.85142 1.90662 1.50237 1.70049 1.31601 1.45589 1.58136 1.17928 1.09262 1.21223 0.94633 0.83064 0.97211 1.19214 0.88905 0.96412 0.91969 1.20496 0.89721 1.47848 0.95056 0.92101 1.25002 0.98836 0.94532 0.94665 1.69834 1.28935 1.44395 1.07504 0.86630 0.82754 0.78830 0.79711 1.20237 1.21175 1.20024 1.22942 1.06455 0.91626 1.02588 1.22928 1.03041 0.99013 0.99683 1.23457 0.79119 1.00395 0.99404 1.86353 1.20740 1.84505 1.29300 1.19025 0.94013 1.01365 0.84530 1.20398 0.91962 1.02073 0.99363 1.20859 0.99887 1.01217 0.91696 1.20859 0.93171 1.01418 0.98460 1.20459 0.94731 1.01879 0.95581 1.18941 0.84499 1.02233 0.93532 1.86351 1.21561 1.72294 1.40488 0.89401 0.90660 0.89831 0.76229 0.96174 0.86300 0.92624 0.91504 0.90160 0.90597 0.91431 0.90340 0.85431 0.85095 0.85382 0.85282 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 8.87 37.16 0.33 -1.54 16 2 C 0.06 1.00 1.03 -91.53 -0.09 0.90 16 3 C 0.49 10.43 5.87 -10.99 -0.06 10.36 16 4 O -0.55 -13.20 15.93 2.41 0.04 -13.17 16 5 N -0.66 -14.75 5.22 -60.30 -0.31 -15.06 16 6 C 0.16 3.92 4.62 -4.05 -0.02 3.90 16 7 C 0.04 0.85 2.03 -155.66 -0.32 0.54 16 8 C -0.49 -12.51 8.38 -34.44 -0.29 -12.80 16 9 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 10 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 11 N -0.87 -22.79 10.24 55.43 0.57 -22.23 16 12 Si 0.89 19.83 29.54 -169.99 -5.02 14.80 16 13 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 14 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 16 C -0.20 -4.38 9.96 -26.69 -0.27 -4.65 16 17 C -0.21 -4.47 9.93 -26.69 -0.27 -4.74 16 18 C 0.05 0.78 5.58 37.40 0.21 0.99 16 19 O -0.30 -5.15 9.89 -38.99 -0.39 -5.53 16 20 C 0.06 0.94 6.31 -39.14 -0.25 0.69 16 21 C -0.12 -1.69 9.96 -39.42 -0.39 -2.09 16 22 C -0.12 -1.43 10.04 -39.59 -0.40 -1.83 16 23 C -0.12 -1.48 10.04 -39.59 -0.40 -1.88 16 24 C -0.11 -1.55 9.96 -39.42 -0.39 -1.94 16 25 C 0.05 0.88 6.17 -39.14 -0.24 0.63 16 26 O -0.29 -4.92 9.30 -32.84 -0.31 -5.23 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.40 8.89 7.64 -40.82 -0.31 8.58 16 31 H 0.02 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.12 3.24 5.79 -51.93 -0.30 2.94 16 33 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 34 H 0.07 1.41 8.14 -51.92 -0.42 0.99 16 35 H 0.08 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.13 1.80 7.90 -51.93 -0.41 1.39 16 40 H 0.13 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 42 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -29.55 358.50 -9.02 -38.57 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -6.06 Total: 14.11 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.94 Total: -11.67 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.25 Total: -37.29 kcal Atomic # 8 Polarization: -23.27 SS G_CDS: -0.65 Total: -23.93 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.55 -9.02 -38.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599872917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.084 kcal (2) G-P(sol) polarization free energy of solvation -29.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds