Wall clock time and date at job start Tue Mar 31 2020 11:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50695 * 109.70627 * 2 1 4 4 O 1.21285 * 120.00375 * 262.06421 * 3 2 1 5 5 N 1.34779 * 120.00139 * 82.33178 * 3 2 1 6 6 C 1.46492 * 120.00330 * 174.78427 * 5 3 2 7 7 C 1.52999 * 109.47366 * 184.95853 * 6 5 3 8 8 C 1.50701 * 115.55439 * 303.73882 * 7 6 5 9 9 H 1.08000 * 120.00301 * 144.03235 * 8 7 6 10 10 C 1.37879 * 119.99780 * 324.04293 * 8 7 6 11 11 N 1.31511 * 119.99636 * 3.53079 * 10 8 7 12 12 Si 1.86797 * 119.99856 * 183.53632 * 10 8 7 13 13 H 1.48505 * 109.47007 * 64.99708 * 12 10 8 14 14 H 1.48501 * 109.47037 * 184.99116 * 12 10 8 15 15 H 1.48491 * 109.47382 * 304.99305 * 12 10 8 16 16 C 1.53003 * 117.50252 * 158.06417 * 7 6 5 17 17 C 1.53001 * 117.49671 * 89.40498 * 7 6 5 18 18 C 1.53466 * 109.74016 * 239.39797 * 2 1 3 19 19 O 1.43190 * 108.22731 * 180.54874 * 18 2 1 20 20 C 1.36106 * 116.69319 * 46.27120 * 19 18 2 21 21 C 1.38702 * 119.38994 * 162.87797 * 20 19 18 22 22 C 1.38198 * 120.06142 * 179.69350 * 21 20 19 23 23 C 1.38251 * 120.11707 * 359.97438 * 22 21 20 24 24 C 1.38196 * 120.11110 * 0.06473 * 23 22 21 25 25 C 1.38710 * 120.06946 * 359.97438 * 24 23 22 26 26 O 1.36100 * 119.39994 * 179.86375 * 25 24 23 27 27 H 1.09005 * 109.47326 * 59.99612 * 1 2 3 28 28 H 1.08997 * 109.47365 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47317 * 300.00354 * 1 2 3 30 30 H 0.97004 * 119.99360 * 354.79374 * 5 3 2 31 31 H 1.09002 * 109.47558 * 304.95800 * 6 5 3 32 32 H 1.09006 * 109.47247 * 64.96201 * 6 5 3 33 33 H 0.97006 * 119.99842 * 185.01246 * 11 10 8 34 34 H 1.09009 * 117.49383 * 0.02562 * 16 7 6 35 35 H 1.08996 * 117.50006 * 145.02247 * 16 7 6 36 36 H 1.09004 * 117.50114 * 214.97848 * 17 7 6 37 37 H 1.09004 * 117.50190 * 0.02562 * 17 7 6 38 38 H 1.08999 * 109.71441 * 300.24753 * 18 2 1 39 39 H 1.08997 * 109.71112 * 60.87971 * 18 2 1 40 40 H 1.07997 * 119.96917 * 359.71418 * 21 20 19 41 41 H 1.08005 * 119.94476 * 180.02562 * 22 21 20 42 42 H 1.07993 * 119.94978 * 180.02562 * 23 22 21 43 43 H 1.07997 * 119.96763 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0381 1.4187 0.0000 4 8 2.3792 1.9408 -1.0403 5 7 2.1187 2.1057 1.1568 6 6 2.7184 3.4421 1.1748 7 6 2.7986 3.9457 2.6173 8 6 1.4922 3.9790 3.3678 9 1 1.4689 3.7456 4.4220 10 6 0.3266 4.3072 2.7085 11 7 0.3434 4.5233 1.4114 12 14 -1.2763 4.4451 3.6578 13 1 -1.1875 5.5748 4.6176 14 1 -2.3935 4.6874 2.7100 15 1 -1.5220 3.1828 4.4003 16 6 3.8193 5.0427 2.9270 17 6 4.0621 3.6116 3.4130 18 6 2.0483 -0.7353 -1.2433 19 8 3.4797 -0.7273 -1.2041 20 6 4.0607 -1.0560 -0.0181 21 6 5.4002 -1.4152 0.0073 22 6 6.0058 -1.7454 1.2048 23 6 5.2789 -1.7183 2.3805 24 6 3.9437 -1.3621 2.3620 25 6 3.3295 -1.0303 1.1634 26 8 2.0132 -0.6843 1.1606 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.7797 1.7150 1.9774 31 1 3.7211 3.3962 0.7498 32 1 2.1048 4.1237 0.5856 33 1 -0.4602 4.8249 0.9595 34 1 4.4334 5.4059 2.1028 35 1 3.5460 5.7882 3.6737 36 1 3.9484 3.4163 4.4793 37 1 4.8363 3.0334 2.9087 38 1 1.6860 -1.7633 -1.2402 39 1 1.7025 -0.2258 -2.1426 40 1 5.9705 -1.4365 -0.9096 41 1 7.0490 -2.0244 1.2225 42 1 5.7550 -1.9765 3.3148 43 1 3.3782 -1.3413 3.2818 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599872917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:55 Heat of formation + Delta-G solvation = -68.672629 kcal Electronic energy + Delta-G solvation = -28087.775637 eV Core-core repulsion = 24292.044954 eV Total energy + Delta-G solvation = -3795.730683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.71992 -40.35190 -38.79341 -38.36022 -38.22381 -34.81301 -34.16226 -33.95841 -31.61094 -30.10775 -28.16956 -27.74827 -27.38497 -24.89627 -23.66183 -23.18164 -22.88651 -21.20712 -20.57119 -19.92064 -19.03178 -18.14265 -17.94656 -16.97158 -16.86481 -16.67741 -16.45036 -15.92164 -15.86100 -15.62245 -15.29041 -14.98237 -14.89426 -14.75537 -14.42628 -14.05517 -13.74720 -13.61923 -13.35937 -13.27789 -12.97375 -12.91976 -12.80113 -12.64371 -12.57325 -12.32046 -12.09564 -12.08868 -11.57969 -11.40767 -10.98044 -10.78613 -10.67415 -10.19121 -9.74394 -9.61369 -9.05944 -7.96439 -6.22530 0.31768 0.34661 1.43365 1.45630 1.47565 1.52557 1.98056 2.10791 2.39226 2.42629 2.77184 3.02575 3.06816 3.52629 3.58575 3.72335 3.74658 4.10063 4.14325 4.21019 4.25269 4.35320 4.46708 4.47208 4.48706 4.57778 4.63952 4.70954 4.72402 4.90396 4.90652 4.99875 5.07059 5.22190 5.23305 5.25627 5.47953 5.52472 5.55975 5.70092 5.77127 5.89234 5.94863 6.34286 6.36338 6.69898 6.87040 7.33372 7.42934 8.90511 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014139 B = 0.005341 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.870504 B = 5240.729110 C = 5978.014412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.065 3.935 3 C 0.486 3.514 4 O -0.583 6.583 5 N -0.663 5.663 6 C 0.175 3.825 7 C 0.009 3.991 8 C -0.504 4.504 9 H 0.059 0.941 10 C 0.036 3.964 11 N -0.892 5.892 12 Si 0.950 3.050 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.267 1.267 16 C -0.197 4.197 17 C -0.186 4.186 18 C 0.051 3.949 19 O -0.319 6.319 20 C 0.027 3.973 21 C -0.132 4.132 22 C -0.109 4.109 23 C -0.114 4.114 24 C -0.119 4.119 25 C 0.024 3.976 26 O -0.297 6.297 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.067 0.933 30 H 0.403 0.597 31 H 0.006 0.994 32 H 0.087 0.913 33 H 0.259 0.741 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.130 0.870 40 H 0.142 0.858 41 H 0.165 0.835 42 H 0.164 0.836 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.541 -14.914 -0.194 15.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.023 3.977 3 C 0.271 3.729 4 O -0.465 6.465 5 N -0.309 5.309 6 C 0.051 3.949 7 C 0.008 3.992 8 C -0.541 4.541 9 H 0.077 0.923 10 C -0.165 4.165 11 N -0.530 5.530 12 Si 0.776 3.224 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.192 1.192 16 C -0.235 4.235 17 C -0.223 4.223 18 C -0.025 4.025 19 O -0.233 6.233 20 C -0.018 4.018 21 C -0.150 4.150 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.138 4.138 25 C -0.021 4.021 26 O -0.212 6.212 27 H 0.110 0.890 28 H 0.130 0.870 29 H 0.086 0.914 30 H 0.238 0.762 31 H 0.025 0.975 32 H 0.105 0.895 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.129 0.871 39 H 0.148 0.852 40 H 0.160 0.840 41 H 0.182 0.818 42 H 0.182 0.818 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.595 -14.520 -1.097 15.269 hybrid contribution -1.157 0.709 0.526 1.455 sum 3.438 -13.811 -0.570 14.244 Atomic orbital electron populations 1.21771 0.86608 1.05944 1.04486 1.22835 0.99397 0.87910 0.87574 1.21069 0.78979 0.88851 0.84026 1.90625 1.51663 1.71540 1.32692 1.45532 1.58278 1.17309 1.09768 1.20852 0.93184 0.83674 0.97152 1.19265 0.89597 0.98392 0.91923 1.20660 0.90567 1.47909 0.94990 0.92312 1.25601 1.01390 0.94297 0.95243 1.70007 1.29212 1.45114 1.08618 0.85731 0.79370 0.78868 0.78400 1.20283 1.21414 1.19173 1.22967 1.05724 0.92026 1.02822 1.22890 1.01304 0.98162 0.99913 1.23652 0.78388 1.01963 0.98490 1.86293 1.21831 1.85082 1.30134 1.19398 0.95128 1.02874 0.84366 1.20768 0.91321 1.02020 1.00937 1.21326 1.01466 0.99225 0.90677 1.21319 0.92255 0.99629 1.00022 1.20791 0.95890 1.01880 0.95209 1.19281 0.84533 1.03861 0.94421 1.86343 1.22172 1.72170 1.40484 0.88951 0.87020 0.91393 0.76202 0.97537 0.89519 0.93115 0.90885 0.90024 0.89498 0.90609 0.87055 0.85234 0.84041 0.81752 0.81832 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 8.87 71.98 0.64 -2.89 16 2 C 0.06 2.16 1.03 -11.39 -0.01 2.15 16 3 C 0.49 21.19 5.87 87.65 0.51 21.70 16 4 O -0.58 -29.33 15.93 -0.04 0.00 -29.33 16 5 N -0.66 -30.26 5.22 -463.07 -2.42 -32.68 16 6 C 0.18 8.77 4.62 86.38 0.40 9.17 16 7 C 0.01 0.43 2.03 -52.93 -0.11 0.32 16 8 C -0.50 -25.51 8.38 25.60 0.21 -25.29 16 9 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 10 C 0.04 1.83 5.38 84.66 0.46 2.29 16 11 N -0.89 -47.79 10.24 21.45 0.22 -47.57 16 12 Si 0.95 40.63 29.54 68.60 2.03 42.66 16 13 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 14 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 15 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 16 C -0.20 -8.63 9.96 30.62 0.30 -8.33 16 17 C -0.19 -7.70 9.93 30.62 0.30 -7.40 16 18 C 0.05 1.50 5.58 72.14 0.40 1.90 16 19 O -0.32 -11.19 9.89 -76.67 -0.76 -11.95 16 20 C 0.03 0.90 6.31 22.56 0.14 1.04 16 21 C -0.13 -3.56 9.96 22.37 0.22 -3.34 16 22 C -0.11 -2.30 10.04 22.26 0.22 -2.08 16 23 C -0.11 -2.44 10.04 22.26 0.22 -2.21 16 24 C -0.12 -3.22 9.96 22.37 0.22 -3.00 16 25 C 0.02 0.76 6.17 22.56 0.14 0.90 16 26 O -0.30 -9.87 9.30 -82.46 -0.77 -10.64 16 27 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16 28 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.40 18.15 7.64 -92.71 -0.71 17.44 16 31 H 0.01 0.33 8.10 -2.39 -0.02 0.31 16 32 H 0.09 4.95 5.79 -2.38 -0.01 4.94 16 33 H 0.26 13.57 8.32 -92.70 -0.77 12.80 16 34 H 0.07 3.07 8.14 -2.38 -0.02 3.05 16 35 H 0.08 3.52 8.14 -2.39 -0.02 3.51 16 36 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.08 3.01 8.14 -2.38 -0.02 2.99 16 38 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.13 3.67 7.90 -2.39 -0.02 3.65 16 40 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 41 H 0.16 2.22 8.06 -2.91 -0.02 2.20 16 42 H 0.16 2.31 8.06 -2.91 -0.02 2.29 16 43 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -65.23 358.50 2.91 -62.32 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: 0.32 Total: 42.27 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: 4.29 Total: -15.08 kcal Atomic # 7 Polarization: -78.05 SS G_CDS: -2.20 Total: -80.25 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -1.53 Total: -51.92 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 2.03 Total: 42.66 kcal Total: -65.23 2.91 -62.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599872917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.353 kcal (2) G-P(sol) polarization free energy of solvation -65.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds