Wall clock time and date at job start Tue Mar 31 2020 11:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00081 * 2 1 4 4 N 1.46498 * 109.47182 * 125.62782 * 3 2 1 5 5 C 1.46498 * 119.99842 * 265.03509 * 4 3 2 6 6 C 1.50705 * 109.47135 * 276.51479 * 5 4 3 7 7 H 1.08001 * 119.99877 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00241 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99516 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 119.99997 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47479 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47441 * 119.99829 * 10 8 6 13 13 H 1.48501 * 109.47093 * 239.99937 * 10 8 6 14 14 C 1.34778 * 120.00260 * 85.03617 * 4 3 2 15 15 O 1.21277 * 120.00059 * 5.74774 * 14 4 3 16 16 C 1.50698 * 120.00000 * 185.75504 * 14 4 3 17 17 C 1.52998 * 109.73724 * 286.18976 * 16 14 4 18 18 C 1.53466 * 109.70863 * 165.58426 * 16 14 4 19 19 O 1.43172 * 108.25867 * 300.02173 * 18 16 14 20 20 C 1.36112 * 116.71168 * 313.82513 * 19 18 16 21 21 C 1.38706 * 119.39741 * 197.15238 * 20 19 18 22 22 C 1.38193 * 120.06849 * 180.19912 * 21 20 19 23 23 C 1.38257 * 120.10922 * 0.04924 * 22 21 20 24 24 C 1.38193 * 120.11427 * 359.92895 * 23 22 21 25 25 C 1.38702 * 120.06555 * 0.26572 * 24 23 22 26 26 O 1.36112 * 119.38860 * 180.64410 * 25 24 23 27 27 H 1.08005 * 119.99584 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.00179 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99584 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47791 * 5.62565 * 3 2 1 31 31 H 1.09009 * 109.46878 * 245.62374 * 3 2 1 32 32 H 1.08998 * 109.47558 * 36.51500 * 5 4 3 33 33 H 1.08998 * 109.47445 * 156.51991 * 5 4 3 34 34 H 0.97005 * 119.99564 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.47407 * 294.60348 * 17 16 14 36 36 H 1.08995 * 109.47382 * 54.60868 * 17 16 14 37 37 H 1.09003 * 109.47329 * 174.60462 * 17 16 14 38 38 H 1.09005 * 109.70385 * 180.32751 * 18 16 14 39 39 H 1.09000 * 109.70890 * 59.71521 * 18 16 14 40 40 H 1.08004 * 119.96411 * 0.21786 * 21 20 19 41 41 H 1.07993 * 119.94698 * 180.02562 * 22 21 20 42 42 H 1.08003 * 119.94070 * 179.97438 * 23 22 21 43 43 H 1.07996 * 119.96702 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0045 1.3257 1.1227 5 6 2.6185 1.9500 2.3905 6 6 2.8545 3.4363 2.3109 7 1 3.2519 3.8723 1.4062 8 6 2.5632 4.2396 3.3930 9 7 2.0798 3.7086 4.4948 10 14 2.8552 6.0819 3.2941 11 1 3.4010 6.4255 1.9565 12 1 1.5716 6.7986 3.5044 13 1 3.8255 6.4864 4.3429 14 6 4.2252 0.7703 0.9891 15 8 4.5841 0.3469 -0.0891 16 6 5.1442 0.6754 2.1797 17 6 5.7105 2.0585 2.5069 18 6 6.2928 -0.2944 1.8709 19 8 5.7301 -1.5792 1.5837 20 6 4.7666 -2.0290 2.4333 21 6 4.4379 -3.3766 2.4379 22 6 3.4589 -3.8476 3.2919 23 6 2.8038 -2.9772 4.1433 24 6 3.1268 -1.6335 4.1441 25 6 4.1056 -1.1536 3.2865 26 8 4.4221 0.1700 3.3081 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3596 2.1311 0.1007 31 1 2.6125 1.4076 -0.9361 32 1 1.5626 1.7596 2.5827 33 1 3.2165 1.5300 3.1993 34 1 1.8745 4.2738 5.2560 35 1 6.3470 2.3936 1.6879 36 1 4.8908 2.7641 2.6421 37 1 6.2972 2.0033 3.4239 38 1 6.9542 -0.3675 2.7343 39 1 6.8533 0.0629 1.0071 40 1 4.9479 -4.0585 1.7734 41 1 3.2048 -4.8972 3.2941 42 1 2.0388 -3.3482 4.8093 43 1 2.6133 -0.9557 4.8098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599961565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:00 Heat of formation + Delta-G solvation = -46.094088 kcal Electronic energy + Delta-G solvation = -28530.237782 eV Core-core repulsion = 24735.486177 eV Total energy + Delta-G solvation = -3794.751604 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.41427 -39.01037 -37.27838 -36.98631 -35.49857 -33.60807 -32.43569 -32.07601 -30.39736 -28.82501 -27.62175 -26.32054 -25.99166 -23.52579 -22.90233 -22.42510 -21.34995 -19.62372 -18.85296 -18.21219 -17.12480 -16.70140 -16.47221 -15.90077 -15.29746 -15.05521 -14.86418 -14.64881 -14.43917 -14.42078 -13.87590 -13.62243 -13.53145 -13.28429 -12.69198 -12.59316 -12.33113 -12.13783 -11.83526 -11.75317 -11.61101 -11.48802 -11.38318 -11.17865 -10.98793 -10.88744 -10.84720 -10.70336 -10.26551 -9.93426 -9.63882 -9.27722 -8.95949 -8.60665 -8.33220 -7.81967 -7.67965 -6.21597 -4.28016 1.53704 1.55572 2.55930 2.92705 3.17568 3.27081 3.30098 3.42903 3.55230 3.85478 3.99580 4.28166 4.49388 4.84417 4.99063 5.10180 5.13539 5.22850 5.35871 5.40344 5.45891 5.49211 5.57035 5.66673 5.73917 5.92673 5.96156 6.14968 6.15183 6.19048 6.32963 6.35220 6.45228 6.66709 6.74884 6.86736 6.93806 6.94151 7.07896 7.24957 7.37413 7.56009 7.69912 7.73886 8.03821 8.26372 8.71051 8.87092 9.36603 10.84230 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.005606 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.246872 B = 4993.280487 C = 5278.234152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.154 4.154 3 C 0.142 3.858 4 N -0.575 5.575 5 C 0.217 3.783 6 C -0.540 4.540 7 H 0.062 0.938 8 C 0.068 3.932 9 N -0.881 5.881 10 Si 0.892 3.108 11 H -0.272 1.272 12 H -0.282 1.282 13 H -0.281 1.281 14 C 0.503 3.497 15 O -0.554 6.554 16 C 0.072 3.928 17 C -0.166 4.166 18 C 0.050 3.950 19 O -0.296 6.296 20 C 0.053 3.947 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.108 4.108 25 C 0.052 3.948 26 O -0.270 6.270 27 H 0.097 0.903 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.078 0.922 32 H 0.030 0.970 33 H 0.078 0.922 34 H 0.265 0.735 35 H 0.073 0.927 36 H 0.131 0.869 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.991 -9.683 -1.278 10.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.173 4.173 3 C 0.020 3.980 4 N -0.304 5.304 5 C 0.099 3.901 6 C -0.578 4.578 7 H 0.080 0.920 8 C -0.136 4.136 9 N -0.518 5.518 10 Si 0.719 3.281 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.207 1.207 14 C 0.289 3.711 15 O -0.434 6.434 16 C 0.031 3.969 17 C -0.222 4.222 18 C -0.026 4.026 19 O -0.210 6.210 20 C 0.007 3.993 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.126 4.126 25 C 0.007 3.993 26 O -0.184 6.184 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.149 0.851 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.145 0.855 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.134 -9.769 -1.657 10.392 hybrid contribution 0.043 1.215 0.087 1.218 sum 3.176 -8.554 -1.570 9.259 Atomic orbital electron populations 1.23744 0.95679 1.01521 1.01942 1.23344 0.96109 0.99186 0.98639 1.20450 0.92045 0.94935 0.90616 1.48171 1.12378 1.54082 1.15803 1.20023 0.97633 0.92537 0.79954 1.21487 1.44210 0.92115 1.00036 0.92023 1.24932 0.94723 0.98794 0.95152 1.69948 1.42603 1.35724 1.03562 0.86532 0.78129 0.85100 0.78303 1.19614 1.20814 1.20720 1.20471 0.82967 0.78469 0.89236 1.90631 1.75138 1.49913 1.27696 1.22630 0.91672 0.97456 0.85160 1.22263 1.04644 0.93412 1.01917 1.23494 0.94115 0.81296 1.03654 1.86316 1.50947 1.34806 1.48961 1.19018 0.92377 0.93321 0.94539 1.20347 1.00444 0.91883 1.01371 1.20810 0.96935 0.99684 0.96725 1.20854 1.00656 0.92423 1.00114 1.20543 0.96017 0.96067 1.00010 1.19118 0.97231 0.83625 0.99355 1.86656 1.71093 1.19684 1.40991 0.88423 0.88889 0.88054 0.89453 0.90387 0.95164 0.90450 0.92521 0.90798 0.85106 0.91168 0.90366 0.85844 0.85342 0.85614 0.85451 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.93 14.32 29.01 0.42 -2.51 16 2 C -0.15 -2.73 9.81 -36.03 -0.35 -3.08 16 3 C 0.14 2.77 5.86 -5.20 -0.03 2.74 16 4 N -0.58 -12.45 2.46 -176.43 -0.43 -12.89 16 5 C 0.22 5.17 4.49 -5.19 -0.02 5.15 16 6 C -0.54 -13.51 6.92 -34.44 -0.24 -13.75 16 7 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 8 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 9 N -0.88 -23.58 13.29 55.43 0.74 -22.85 16 10 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 11 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 13 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 14 C 0.50 10.77 5.82 -10.99 -0.06 10.70 16 15 O -0.55 -12.66 15.28 -6.27 -0.10 -12.75 16 16 C 0.07 1.38 0.67 -91.53 -0.06 1.32 16 17 C -0.17 -2.96 8.62 37.16 0.32 -2.64 16 18 C 0.05 0.84 5.55 37.40 0.21 1.05 16 19 O -0.30 -5.46 9.70 -43.31 -0.42 -5.88 16 20 C 0.05 0.95 6.31 -39.14 -0.25 0.70 16 21 C -0.12 -1.83 9.96 -39.42 -0.39 -2.23 16 22 C -0.12 -1.61 10.04 -39.59 -0.40 -2.01 16 23 C -0.12 -1.67 10.04 -39.59 -0.40 -2.07 16 24 C -0.11 -1.79 9.96 -39.43 -0.39 -2.19 16 25 C 0.05 0.97 6.16 -39.14 -0.24 0.73 16 26 O -0.27 -5.43 6.88 -32.88 -0.23 -5.65 16 27 H 0.10 1.43 7.84 -52.48 -0.41 1.01 16 28 H 0.09 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.09 1.67 7.69 -51.93 -0.40 1.27 16 31 H 0.08 1.51 7.50 -51.92 -0.39 1.12 16 32 H 0.03 0.78 8.12 -51.93 -0.42 0.36 16 33 H 0.08 1.92 4.14 -51.93 -0.22 1.70 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 36 H 0.13 2.79 4.27 -51.93 -0.22 2.56 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.12 1.88 7.96 -51.93 -0.41 1.46 16 40 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 41 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 42 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 43 H 0.14 2.27 8.06 -52.49 -0.42 1.84 16 LS Contribution 354.85 15.07 5.35 5.35 Total: -1.00 -29.36 354.85 -7.93 -37.29 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -5.82 Total: 9.04 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.99 Total: -6.47 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.30 Total: -35.73 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.74 Total: -24.28 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.36 -7.93 -37.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599961565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.801 kcal (2) G-P(sol) polarization free energy of solvation -29.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds