Wall clock time and date at job start Tue Mar 31 2020 11:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 120.00081 * 2 1 4 4 N 1.46498 * 109.47182 * 125.62782 * 3 2 1 5 5 C 1.46498 * 119.99842 * 265.03509 * 4 3 2 6 6 C 1.50705 * 109.47135 * 276.51479 * 5 4 3 7 7 H 1.08001 * 119.99877 * 0.02562 * 6 5 4 8 8 C 1.37880 * 120.00241 * 180.02562 * 6 5 4 9 9 N 1.31511 * 119.99516 * 0.02562 * 8 6 5 10 10 Si 1.86792 * 119.99997 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47479 * 359.97438 * 10 8 6 12 12 H 1.48507 * 109.47441 * 119.99829 * 10 8 6 13 13 H 1.48501 * 109.47093 * 239.99937 * 10 8 6 14 14 C 1.34778 * 120.00260 * 85.03617 * 4 3 2 15 15 O 1.21277 * 120.00059 * 5.74774 * 14 4 3 16 16 C 1.50698 * 120.00000 * 185.75504 * 14 4 3 17 17 C 1.52998 * 109.73724 * 286.18976 * 16 14 4 18 18 C 1.53466 * 109.70863 * 165.58426 * 16 14 4 19 19 O 1.43172 * 108.25867 * 300.02173 * 18 16 14 20 20 C 1.36112 * 116.71168 * 313.82513 * 19 18 16 21 21 C 1.38706 * 119.39741 * 197.15238 * 20 19 18 22 22 C 1.38193 * 120.06849 * 180.19912 * 21 20 19 23 23 C 1.38257 * 120.10922 * 0.04924 * 22 21 20 24 24 C 1.38193 * 120.11427 * 359.92895 * 23 22 21 25 25 C 1.38702 * 120.06555 * 0.26572 * 24 23 22 26 26 O 1.36112 * 119.38860 * 180.64410 * 25 24 23 27 27 H 1.08005 * 119.99584 * 0.02562 * 1 2 3 28 28 H 1.07993 * 120.00179 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99584 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47791 * 5.62565 * 3 2 1 31 31 H 1.09009 * 109.46878 * 245.62374 * 3 2 1 32 32 H 1.08998 * 109.47558 * 36.51500 * 5 4 3 33 33 H 1.08998 * 109.47445 * 156.51991 * 5 4 3 34 34 H 0.97005 * 119.99564 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.47407 * 294.60348 * 17 16 14 36 36 H 1.08995 * 109.47382 * 54.60868 * 17 16 14 37 37 H 1.09003 * 109.47329 * 174.60462 * 17 16 14 38 38 H 1.09005 * 109.70385 * 180.32751 * 18 16 14 39 39 H 1.09000 * 109.70890 * 59.71521 * 18 16 14 40 40 H 1.08004 * 119.96411 * 0.21786 * 21 20 19 41 41 H 1.07993 * 119.94698 * 180.02562 * 22 21 20 42 42 H 1.08003 * 119.94070 * 179.97438 * 23 22 21 43 43 H 1.07996 * 119.96702 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0045 1.3257 1.1227 5 6 2.6185 1.9500 2.3905 6 6 2.8545 3.4363 2.3109 7 1 3.2519 3.8723 1.4062 8 6 2.5632 4.2396 3.3930 9 7 2.0798 3.7086 4.4948 10 14 2.8552 6.0819 3.2941 11 1 3.4010 6.4255 1.9565 12 1 1.5716 6.7986 3.5044 13 1 3.8255 6.4864 4.3429 14 6 4.2252 0.7703 0.9891 15 8 4.5841 0.3469 -0.0891 16 6 5.1442 0.6754 2.1797 17 6 5.7105 2.0585 2.5069 18 6 6.2928 -0.2944 1.8709 19 8 5.7301 -1.5792 1.5837 20 6 4.7666 -2.0290 2.4333 21 6 4.4379 -3.3766 2.4379 22 6 3.4589 -3.8476 3.2919 23 6 2.8038 -2.9772 4.1433 24 6 3.1268 -1.6335 4.1441 25 6 4.1056 -1.1536 3.2865 26 8 4.4221 0.1700 3.3081 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5400 -0.9352 -0.0004 29 1 1.8499 -0.9353 0.0004 30 1 1.3596 2.1311 0.1007 31 1 2.6125 1.4076 -0.9361 32 1 1.5626 1.7596 2.5827 33 1 3.2165 1.5300 3.1993 34 1 1.8745 4.2738 5.2560 35 1 6.3470 2.3936 1.6879 36 1 4.8908 2.7641 2.6421 37 1 6.2972 2.0033 3.4239 38 1 6.9542 -0.3675 2.7343 39 1 6.8533 0.0629 1.0071 40 1 4.9479 -4.0585 1.7734 41 1 3.2048 -4.8972 3.2941 42 1 2.0388 -3.3482 4.8093 43 1 2.6133 -0.9557 4.8098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599961565.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:59 Heat of formation + Delta-G solvation = -61.402149 kcal Electronic energy + Delta-G solvation = -28530.901589 eV Core-core repulsion = 24735.486177 eV Total energy + Delta-G solvation = -3795.415412 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.80621 -40.53283 -38.55011 -38.39179 -37.15166 -35.27523 -34.08638 -33.58448 -31.59799 -30.08230 -29.45942 -27.74130 -27.48987 -25.17027 -24.50475 -23.65298 -22.78146 -21.02571 -20.23627 -19.65127 -18.71775 -18.39616 -17.87931 -17.54120 -16.83145 -16.56839 -16.22312 -16.17633 -15.99083 -15.68163 -15.30699 -14.92158 -14.89808 -14.73935 -14.38383 -14.11836 -13.81816 -13.67343 -13.34390 -13.20913 -13.05268 -12.89193 -12.78019 -12.73677 -12.60898 -12.43103 -12.31784 -12.07449 -12.04988 -11.65922 -11.20792 -10.86035 -10.57804 -10.34489 -9.60666 -9.53124 -9.00782 -8.17879 -6.30505 0.32868 0.35207 1.18327 1.36294 1.40874 1.45453 1.54741 2.10241 2.12153 2.35330 2.46040 2.77840 3.10316 3.16044 3.37137 3.62045 3.81859 3.97966 4.09427 4.14068 4.14966 4.25145 4.36597 4.43558 4.47264 4.52867 4.68048 4.71164 4.75691 4.91012 4.92638 4.94903 5.18090 5.23984 5.38765 5.46480 5.52061 5.59378 5.61825 5.72904 5.75529 5.85546 5.95663 6.07832 6.39473 6.49992 6.81122 7.12396 7.38046 8.87844 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.005606 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.246872 B = 4993.280487 C = 5278.234152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.180 4.180 3 C 0.140 3.860 4 N -0.581 5.581 5 C 0.238 3.762 6 C -0.540 4.540 7 H 0.054 0.946 8 C 0.027 3.973 9 N -0.912 5.912 10 Si 0.953 3.047 11 H -0.269 1.269 12 H -0.281 1.281 13 H -0.276 1.276 14 C 0.499 3.501 15 O -0.574 6.574 16 C 0.069 3.931 17 C -0.162 4.162 18 C 0.052 3.948 19 O -0.312 6.312 20 C 0.029 3.971 21 C -0.126 4.126 22 C -0.108 4.108 23 C -0.113 4.113 24 C -0.127 4.127 25 C 0.020 3.980 26 O -0.290 6.290 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.002 0.998 33 H 0.070 0.930 34 H 0.267 0.733 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.147 0.853 41 H 0.169 0.831 42 H 0.162 0.838 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 -10.985 -1.172 11.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.200 4.200 3 C 0.018 3.982 4 N -0.309 5.309 5 C 0.118 3.882 6 C -0.579 4.579 7 H 0.072 0.928 8 C -0.174 4.174 9 N -0.551 5.551 10 Si 0.779 3.221 11 H -0.193 1.193 12 H -0.207 1.207 13 H -0.202 1.202 14 C 0.286 3.714 15 O -0.455 6.455 16 C 0.027 3.973 17 C -0.219 4.219 18 C -0.024 4.024 19 O -0.226 6.226 20 C -0.016 4.016 21 C -0.145 4.145 22 C -0.126 4.126 23 C -0.131 4.131 24 C -0.145 4.145 25 C -0.024 4.024 26 O -0.206 6.206 27 H 0.125 0.875 28 H 0.138 0.862 29 H 0.106 0.894 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.020 0.980 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.120 0.880 39 H 0.152 0.848 40 H 0.165 0.835 41 H 0.187 0.813 42 H 0.179 0.821 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.913 -11.078 -1.560 11.560 hybrid contribution 0.015 1.496 0.052 1.497 sum 2.927 -9.582 -1.508 10.132 Atomic orbital electron populations 1.24014 0.94716 1.03193 0.97890 1.23091 0.96883 0.97595 1.02384 1.20522 0.91877 0.96102 0.89724 1.48197 1.13121 1.54058 1.15551 1.19623 0.95582 0.92154 0.80866 1.21564 1.43823 0.92752 0.99721 0.92775 1.25595 0.94470 1.02624 0.94744 1.70046 1.43667 1.37166 1.04195 0.85581 0.77963 0.80285 0.78317 1.19343 1.20661 1.20159 1.20934 0.82984 0.77657 0.89828 1.90598 1.75517 1.50706 1.28714 1.22694 0.91842 0.98598 0.84139 1.22201 1.03826 0.92099 1.03726 1.23622 0.93352 0.80281 1.05110 1.86265 1.51355 1.35287 1.49735 1.19355 0.92898 0.94412 0.94909 1.20770 1.00833 0.91030 1.01857 1.21309 0.95001 1.01567 0.94713 1.21275 1.00689 0.91024 1.00110 1.20733 0.96142 0.97578 1.00095 1.19431 0.98777 0.83197 1.00999 1.86583 1.71801 1.20968 1.41210 0.87517 0.86245 0.89404 0.89596 0.90923 0.97967 0.91232 0.92381 0.88811 0.88425 0.89270 0.87997 0.84804 0.83488 0.81336 0.82084 0.85589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.70 14.32 67.78 0.97 -3.73 16 2 C -0.18 -6.47 9.81 25.64 0.25 -6.21 16 3 C 0.14 5.63 5.86 85.63 0.50 6.13 16 4 N -0.58 -26.04 2.46 -830.51 -2.04 -28.08 16 5 C 0.24 11.75 4.49 85.64 0.38 12.14 16 6 C -0.54 -27.72 6.92 25.60 0.18 -27.55 16 7 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 8 C 0.03 1.39 5.46 84.66 0.46 1.85 16 9 N -0.91 -49.76 13.29 21.45 0.28 -49.47 16 10 Si 0.95 40.92 29.54 68.60 2.03 42.94 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.28 -11.56 7.11 99.48 0.71 -10.86 16 14 C 0.50 21.95 5.82 87.66 0.51 22.46 16 15 O -0.57 -26.83 15.28 8.29 0.13 -26.71 16 16 C 0.07 2.66 0.67 -11.38 -0.01 2.66 16 17 C -0.16 -5.84 8.62 71.98 0.62 -5.22 16 18 C 0.05 1.72 5.55 72.14 0.40 2.12 16 19 O -0.31 -11.46 9.70 -72.63 -0.70 -12.17 16 20 C 0.03 1.04 6.31 22.56 0.14 1.18 16 21 C -0.13 -3.56 9.96 22.37 0.22 -3.34 16 22 C -0.11 -2.46 10.04 22.26 0.22 -2.23 16 23 C -0.11 -2.83 10.04 22.26 0.22 -2.60 16 24 C -0.13 -4.23 9.96 22.37 0.22 -4.01 16 25 C 0.02 0.78 6.16 22.56 0.14 0.91 16 26 O -0.29 -12.07 6.88 -82.59 -0.57 -12.64 16 27 H 0.11 2.95 7.84 -2.91 -0.02 2.92 16 28 H 0.12 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.09 3.38 8.06 -2.91 -0.02 3.36 16 30 H 0.09 3.38 7.69 -2.39 -0.02 3.36 16 31 H 0.07 2.93 7.50 -2.38 -0.02 2.91 16 32 H 0.00 0.12 8.12 -2.39 -0.02 0.10 16 33 H 0.07 3.61 4.14 -2.40 -0.01 3.60 16 34 H 0.27 13.78 8.31 -92.70 -0.77 13.01 16 35 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 36 H 0.10 4.26 4.27 -2.39 -0.01 4.25 16 37 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 38 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 39 H 0.13 4.01 7.96 -2.39 -0.02 3.99 16 40 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 41 H 0.17 2.40 8.06 -2.91 -0.02 2.38 16 42 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 43 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -65.22 354.85 5.58 -59.64 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 1.01 Total: 31.92 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 5.44 Total: -5.44 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -1.75 Total: -77.55 kcal Atomic # 8 Polarization: -50.37 SS G_CDS: -1.15 Total: -51.51 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Total: -65.22 5.58 -59.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599961565.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.761 kcal (2) G-P(sol) polarization free energy of solvation -65.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds