Wall clock time and date at job start Tue Mar 31 2020 11:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99971 * 2 1 4 4 N 1.46509 * 109.46847 * 127.09772 * 3 2 1 5 5 C 1.46502 * 119.99695 * 277.99829 * 4 3 2 6 6 C 1.50703 * 109.46569 * 269.99802 * 5 4 3 7 7 H 1.07996 * 120.00352 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99564 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00239 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99989 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46985 * 60.00143 * 10 8 6 12 12 H 1.48505 * 109.47129 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46752 * 299.99911 * 10 8 6 14 14 C 1.34770 * 119.99976 * 97.99638 * 4 3 2 15 15 O 1.21280 * 119.99913 * 185.54839 * 14 4 3 16 16 C 1.50702 * 119.99998 * 5.55192 * 14 4 3 17 17 C 1.52999 * 109.70917 * 70.78782 * 16 14 4 18 18 C 1.53490 * 109.75643 * 191.40115 * 16 14 4 19 19 O 1.43173 * 108.24645 * 59.93904 * 18 16 14 20 20 C 1.36112 * 116.70940 * 46.16476 * 19 18 16 21 21 C 1.38701 * 119.39461 * 162.88753 * 20 19 18 22 22 C 1.38198 * 120.06675 * 179.86814 * 21 20 19 23 23 C 1.38250 * 120.11259 * 0.02562 * 22 21 20 24 24 C 1.38196 * 120.11344 * 0.05376 * 23 22 21 25 25 C 1.38701 * 120.06388 * 359.97438 * 24 23 22 26 26 O 1.36114 * 119.38975 * 179.81864 * 25 24 23 27 27 H 1.08003 * 120.00333 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.00206 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00206 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47038 * 7.10137 * 3 2 1 31 31 H 1.08997 * 109.47093 * 247.09089 * 3 2 1 32 32 H 1.09003 * 109.47347 * 29.99841 * 5 4 3 33 33 H 1.08998 * 109.47039 * 150.00121 * 5 4 3 34 34 H 0.96998 * 120.00430 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.46549 * 306.15469 * 17 16 14 36 36 H 1.09002 * 109.47030 * 66.15703 * 17 16 14 37 37 H 1.09002 * 109.47165 * 186.15555 * 17 16 14 38 38 H 1.09002 * 109.70935 * 300.24718 * 18 16 14 39 39 H 1.09002 * 109.70080 * 179.62621 * 18 16 14 40 40 H 1.07997 * 119.97289 * 359.84171 * 21 20 19 41 41 H 1.08003 * 119.94485 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.94818 * 180.02562 * 23 22 21 43 43 H 1.08006 * 119.96773 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0292 1.3114 1.1018 5 6 2.5916 1.6537 2.4573 6 6 2.7234 3.1402 2.6673 7 1 3.0954 3.7672 1.8705 8 6 2.3690 3.6997 3.8765 9 7 1.9164 2.9361 4.8470 10 14 2.5316 5.5424 4.1366 11 1 1.6855 6.2583 3.1484 12 1 2.0894 5.8892 5.5112 13 1 3.9500 5.9442 3.9573 14 6 4.3200 1.0023 0.8682 15 8 5.0982 0.9089 1.7937 16 6 4.7963 0.7726 -0.5430 17 6 4.8176 2.1004 -1.3029 18 6 6.2059 0.1654 -0.5224 19 8 6.1477 -1.0790 0.1832 20 6 5.1279 -1.9198 -0.1424 21 6 5.2046 -3.2559 0.2218 22 6 4.1759 -4.1212 -0.0993 23 6 3.0682 -3.6578 -0.7845 24 6 2.9862 -2.3281 -1.1517 25 6 4.0154 -1.4545 -0.8331 26 8 3.9221 -0.1484 -1.2047 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3620 2.1296 0.1270 31 1 2.5916 1.4197 -0.9466 32 1 1.5503 1.3592 2.5883 33 1 3.2120 1.1279 3.1830 34 1 1.6674 3.3296 5.6978 35 1 3.8392 2.5753 -1.2318 36 1 5.5722 2.7558 -0.8681 37 1 5.0567 1.9158 -2.3503 38 1 6.8912 0.8442 -0.0148 39 1 6.5469 -0.0065 -1.5434 40 1 6.0692 -3.6207 0.7564 41 1 4.2379 -5.1613 0.1849 42 1 2.2656 -4.3362 -1.0336 43 1 2.1199 -1.9687 -1.6873 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599961566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:04 Heat of formation + Delta-G solvation = -40.677633 kcal Electronic energy + Delta-G solvation = -28347.788225 eV Core-core repulsion = 24553.271496 eV Total energy + Delta-G solvation = -3794.516729 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.66109 -39.01362 -37.48656 -37.17731 -35.60418 -33.21286 -32.95070 -32.00551 -30.60655 -29.09148 -27.73729 -26.67966 -25.57930 -24.14046 -23.05936 -22.64391 -21.12649 -19.70529 -18.99865 -18.50016 -17.26698 -16.85169 -16.50506 -16.07475 -15.30522 -15.27063 -14.93090 -14.68304 -14.51661 -14.29533 -14.05033 -13.83650 -13.79393 -13.31542 -12.93498 -12.71042 -12.55355 -12.33278 -12.11411 -11.86959 -11.79871 -11.61368 -11.36460 -11.26372 -11.10760 -11.00869 -10.80918 -10.59241 -10.26007 -10.18021 -9.67899 -9.09813 -9.03211 -8.49890 -8.45368 -7.93771 -7.72566 -6.06090 -4.11870 1.31575 1.36949 2.57442 2.79040 3.26472 3.29420 3.34116 3.35174 3.40740 3.73518 3.82722 4.22085 4.40630 4.60999 4.79481 4.82911 4.99965 5.13084 5.22222 5.28021 5.31847 5.35164 5.41215 5.48508 5.54273 5.56285 5.59320 5.74732 5.88772 5.99373 6.14130 6.15738 6.22564 6.32626 6.47396 6.65433 6.91221 6.94799 7.02471 7.11283 7.42713 7.47949 7.51690 7.89211 8.19850 8.31692 8.80541 8.96871 9.52884 11.02027 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.004837 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.651490 B = 5787.088991 C = 6247.847807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.163 4.163 3 C 0.130 3.870 4 N -0.577 5.577 5 C 0.247 3.753 6 C -0.529 4.529 7 H 0.057 0.943 8 C 0.063 3.937 9 N -0.892 5.892 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.494 3.506 15 O -0.520 6.520 16 C 0.056 3.944 17 C -0.141 4.141 18 C 0.053 3.947 19 O -0.290 6.290 20 C 0.061 3.939 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.114 4.114 25 C 0.050 3.950 26 O -0.288 6.288 27 H 0.093 0.907 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.264 0.736 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.079 0.921 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 -9.729 -15.975 18.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.182 4.182 3 C 0.007 3.993 4 N -0.307 5.307 5 C 0.128 3.872 6 C -0.568 4.568 7 H 0.075 0.925 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.278 3.722 15 O -0.396 6.396 16 C 0.014 3.986 17 C -0.198 4.198 18 C -0.023 4.023 19 O -0.204 6.204 20 C 0.015 3.985 21 C -0.137 4.137 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.133 4.133 25 C 0.005 3.995 26 O -0.203 6.203 27 H 0.111 0.889 28 H 0.114 0.886 29 H 0.132 0.868 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.144 0.856 39 H 0.097 0.903 40 H 0.150 0.850 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.000 -9.681 -15.246 18.307 hybrid contribution -0.065 1.185 0.287 1.221 sum 2.935 -8.495 -14.959 17.451 Atomic orbital electron populations 1.23748 0.95790 1.01493 1.01945 1.23697 0.96266 0.99637 0.98583 1.20826 0.92426 0.95349 0.90697 1.48132 1.06365 1.64862 1.11369 1.19314 0.95697 0.95853 0.76337 1.21354 1.44066 0.92366 0.99015 0.92499 1.24932 0.95017 0.98370 0.95655 1.69928 1.43518 1.35393 1.04245 0.86560 0.78560 0.85049 0.77250 1.20209 1.21126 1.20182 1.20256 0.83676 0.79062 0.89236 1.90718 1.53889 1.50811 1.44165 1.22959 0.91154 0.91539 0.92965 1.21906 1.05170 0.92451 1.00294 1.23433 0.96097 0.84930 0.97815 1.86375 1.45200 1.27841 1.60943 1.19037 0.88075 0.91252 1.00140 1.20432 1.00798 0.89667 1.02767 1.20870 0.93601 0.99515 0.99494 1.20860 0.98685 0.94650 1.00032 1.20464 0.97066 0.92679 1.03055 1.18912 0.94439 0.84544 1.01611 1.86431 1.59313 1.13884 1.60683 0.88900 0.88581 0.86828 0.90199 0.89157 0.94799 0.93872 0.92602 0.89756 0.89326 0.90335 0.85554 0.90312 0.84973 0.85316 0.85290 0.84680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 14.32 29.02 0.42 -2.36 16 2 C -0.16 -2.65 8.74 -36.02 -0.31 -2.96 16 3 C 0.13 2.30 4.91 -5.19 -0.03 2.28 16 4 N -0.58 -12.66 2.45 -176.42 -0.43 -13.09 16 5 C 0.25 6.62 5.21 -5.19 -0.03 6.60 16 6 C -0.53 -14.96 9.39 -34.44 -0.32 -15.29 16 7 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 10 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 14 C 0.49 10.58 5.91 -10.99 -0.06 10.52 16 15 O -0.52 -13.29 15.12 -8.33 -0.13 -13.41 16 16 C 0.06 0.89 0.67 -91.52 -0.06 0.83 16 17 C -0.14 -1.77 8.49 37.16 0.32 -1.45 16 18 C 0.05 0.79 5.55 37.41 0.21 0.99 16 19 O -0.29 -5.07 9.62 -44.25 -0.43 -5.50 16 20 C 0.06 0.99 6.31 -39.14 -0.25 0.74 16 21 C -0.12 -1.65 9.96 -39.42 -0.39 -2.04 16 22 C -0.12 -1.36 10.04 -39.59 -0.40 -1.75 16 23 C -0.12 -1.41 10.04 -39.59 -0.40 -1.81 16 24 C -0.11 -1.49 7.71 -39.43 -0.30 -1.80 16 25 C 0.05 0.77 5.31 -39.14 -0.21 0.56 16 26 O -0.29 -4.41 6.71 -32.88 -0.22 -4.63 16 27 H 0.09 1.16 8.06 -52.48 -0.42 0.74 16 28 H 0.10 1.35 7.85 -52.49 -0.41 0.93 16 29 H 0.11 1.87 3.82 -52.49 -0.20 1.67 16 30 H 0.08 1.43 7.79 -51.93 -0.40 1.03 16 31 H 0.09 1.40 3.76 -51.93 -0.20 1.20 16 32 H 0.03 0.94 8.07 -51.93 -0.42 0.52 16 33 H 0.04 1.32 7.35 -51.93 -0.38 0.94 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.08 1.10 6.05 -51.93 -0.31 0.79 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.13 1.78 7.99 -51.93 -0.42 1.37 16 39 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 42 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.14 1.56 7.51 -52.48 -0.39 1.17 16 LS Contribution 349.01 15.07 5.26 5.26 Total: -1.00 -34.17 349.01 -7.79 -41.96 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -5.64 Total: 3.95 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.92 Total: -5.25 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.30 Total: -39.07 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.77 Total: -23.54 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.17 -7.79 -41.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599961566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.284 kcal (2) G-P(sol) polarization free energy of solvation -34.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds