Wall clock time and date at job start Tue Mar 31 2020 11:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50701 * 119.99971 * 2 1 4 4 N 1.46509 * 109.46847 * 127.09772 * 3 2 1 5 5 C 1.46502 * 119.99695 * 277.99829 * 4 3 2 6 6 C 1.50703 * 109.46569 * 269.99802 * 5 4 3 7 7 H 1.07996 * 120.00352 * 0.02562 * 6 5 4 8 8 C 1.37876 * 119.99564 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00239 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99989 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46985 * 60.00143 * 10 8 6 12 12 H 1.48505 * 109.47129 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46752 * 299.99911 * 10 8 6 14 14 C 1.34770 * 119.99976 * 97.99638 * 4 3 2 15 15 O 1.21280 * 119.99913 * 185.54839 * 14 4 3 16 16 C 1.50702 * 119.99998 * 5.55192 * 14 4 3 17 17 C 1.52999 * 109.70917 * 70.78782 * 16 14 4 18 18 C 1.53490 * 109.75643 * 191.40115 * 16 14 4 19 19 O 1.43173 * 108.24645 * 59.93904 * 18 16 14 20 20 C 1.36112 * 116.70940 * 46.16476 * 19 18 16 21 21 C 1.38701 * 119.39461 * 162.88753 * 20 19 18 22 22 C 1.38198 * 120.06675 * 179.86814 * 21 20 19 23 23 C 1.38250 * 120.11259 * 0.02562 * 22 21 20 24 24 C 1.38196 * 120.11344 * 0.05376 * 23 22 21 25 25 C 1.38701 * 120.06388 * 359.97438 * 24 23 22 26 26 O 1.36114 * 119.38975 * 179.81864 * 25 24 23 27 27 H 1.08003 * 120.00333 * 180.02562 * 1 2 3 28 28 H 1.07999 * 120.00206 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00206 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47038 * 7.10137 * 3 2 1 31 31 H 1.08997 * 109.47093 * 247.09089 * 3 2 1 32 32 H 1.09003 * 109.47347 * 29.99841 * 5 4 3 33 33 H 1.08998 * 109.47039 * 150.00121 * 5 4 3 34 34 H 0.96998 * 120.00430 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.46549 * 306.15469 * 17 16 14 36 36 H 1.09002 * 109.47030 * 66.15703 * 17 16 14 37 37 H 1.09002 * 109.47165 * 186.15555 * 17 16 14 38 38 H 1.09002 * 109.70935 * 300.24718 * 18 16 14 39 39 H 1.09002 * 109.70080 * 179.62621 * 18 16 14 40 40 H 1.07997 * 119.97289 * 359.84171 * 21 20 19 41 41 H 1.08003 * 119.94485 * 179.97438 * 22 21 20 42 42 H 1.08003 * 119.94818 * 180.02562 * 23 22 21 43 43 H 1.08006 * 119.96773 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0292 1.3114 1.1018 5 6 2.5916 1.6537 2.4573 6 6 2.7234 3.1402 2.6673 7 1 3.0954 3.7672 1.8705 8 6 2.3690 3.6997 3.8765 9 7 1.9164 2.9361 4.8470 10 14 2.5316 5.5424 4.1366 11 1 1.6855 6.2583 3.1484 12 1 2.0894 5.8892 5.5112 13 1 3.9500 5.9442 3.9573 14 6 4.3200 1.0023 0.8682 15 8 5.0982 0.9089 1.7937 16 6 4.7963 0.7726 -0.5430 17 6 4.8176 2.1004 -1.3029 18 6 6.2059 0.1654 -0.5224 19 8 6.1477 -1.0790 0.1832 20 6 5.1279 -1.9198 -0.1424 21 6 5.2046 -3.2559 0.2218 22 6 4.1759 -4.1212 -0.0993 23 6 3.0682 -3.6578 -0.7845 24 6 2.9862 -2.3281 -1.1517 25 6 4.0154 -1.4545 -0.8331 26 8 3.9221 -0.1484 -1.2047 27 1 -0.5401 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3620 2.1296 0.1270 31 1 2.5916 1.4197 -0.9466 32 1 1.5503 1.3592 2.5883 33 1 3.2120 1.1279 3.1830 34 1 1.6674 3.3296 5.6978 35 1 3.8392 2.5753 -1.2318 36 1 5.5722 2.7558 -0.8681 37 1 5.0567 1.9158 -2.3503 38 1 6.8912 0.8442 -0.0148 39 1 6.5469 -0.0065 -1.5434 40 1 6.0692 -3.6207 0.7564 41 1 4.2379 -5.1613 0.1849 42 1 2.2656 -4.3362 -1.0336 43 1 2.1199 -1.9687 -1.6873 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599961566.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:03 Heat of formation + Delta-G solvation = -61.553092 kcal Electronic energy + Delta-G solvation = -28348.693453 eV Core-core repulsion = 24553.271496 eV Total energy + Delta-G solvation = -3795.421957 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.87796 -40.47836 -38.62439 -38.43909 -37.20888 -35.13606 -34.16013 -33.66049 -31.64061 -30.16839 -29.67704 -27.82829 -27.02370 -25.84033 -24.45502 -23.70921 -22.62112 -20.96689 -20.22148 -19.84512 -18.71169 -18.52635 -17.94734 -17.62485 -16.71482 -16.59846 -16.46155 -16.14240 -15.82582 -15.54905 -15.44270 -15.05578 -14.86364 -14.67512 -14.45611 -14.13463 -13.84193 -13.76355 -13.37031 -13.33975 -13.06046 -12.91492 -12.87343 -12.77889 -12.59277 -12.52087 -12.29460 -12.22523 -12.02027 -11.73119 -11.34711 -10.70276 -10.67413 -10.28814 -9.59189 -9.55003 -9.04305 -8.25338 -6.41520 0.29384 0.33820 1.29056 1.34498 1.39881 1.41526 1.48406 2.04484 2.06854 2.31803 2.41498 2.74962 3.03676 3.04862 3.32514 3.58261 3.69656 4.04377 4.09923 4.12915 4.21291 4.25934 4.34066 4.39605 4.44717 4.48190 4.59710 4.64319 4.79872 4.86751 4.93436 5.03358 5.06229 5.14523 5.21544 5.21949 5.44676 5.50819 5.68664 5.72161 5.72515 5.87678 5.93873 6.00117 6.36387 6.58020 6.68007 7.15871 7.32641 8.82468 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.004837 C = 0.004480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.651490 B = 5787.088991 C = 6247.847807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.188 4.188 3 C 0.130 3.870 4 N -0.582 5.582 5 C 0.266 3.734 6 C -0.544 4.544 7 H 0.060 0.940 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.971 3.029 11 H -0.258 1.258 12 H -0.280 1.280 13 H -0.275 1.275 14 C 0.485 3.515 15 O -0.575 6.575 16 C 0.066 3.934 17 C -0.139 4.139 18 C 0.049 3.951 19 O -0.320 6.320 20 C 0.027 3.973 21 C -0.137 4.137 22 C -0.110 4.110 23 C -0.117 4.117 24 C -0.117 4.117 25 C 0.025 3.975 26 O -0.282 6.282 27 H 0.118 0.882 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.018 0.982 33 H -0.009 1.009 34 H 0.268 0.732 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.136 0.864 41 H 0.162 0.838 42 H 0.167 0.833 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.553 -9.899 -18.411 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.207 4.207 3 C 0.008 3.992 4 N -0.312 5.312 5 C 0.145 3.855 6 C -0.583 4.583 7 H 0.078 0.922 8 C -0.191 4.191 9 N -0.569 5.569 10 Si 0.795 3.205 11 H -0.182 1.182 12 H -0.205 1.205 13 H -0.200 1.200 14 C 0.271 3.729 15 O -0.455 6.455 16 C 0.024 3.976 17 C -0.196 4.196 18 C -0.026 4.026 19 O -0.234 6.234 20 C -0.018 4.018 21 C -0.155 4.155 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.135 4.135 25 C -0.020 4.020 26 O -0.197 6.197 27 H 0.136 0.864 28 H 0.118 0.882 29 H 0.131 0.869 30 H 0.092 0.908 31 H 0.132 0.868 32 H 0.036 0.964 33 H 0.009 0.991 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.133 0.867 40 H 0.154 0.846 41 H 0.180 0.820 42 H 0.184 0.816 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.892 -9.864 -17.742 20.387 hybrid contribution 0.201 1.077 1.072 1.533 sum 2.093 -8.787 -16.670 18.960 Atomic orbital electron populations 1.24005 0.95170 1.02901 0.98845 1.23596 0.96921 0.98746 1.01397 1.21036 0.91879 0.96213 0.90060 1.48114 1.07764 1.64763 1.10515 1.18695 0.93481 0.94899 0.78398 1.21629 1.44167 0.92976 0.99489 0.92224 1.25918 0.94292 1.03740 0.95172 1.70069 1.44266 1.37736 1.04789 0.85414 0.78725 0.78619 0.77739 1.18199 1.20474 1.19986 1.21317 0.82732 0.77375 0.91428 1.90671 1.55193 1.52975 1.46688 1.22828 0.91655 0.93535 0.89608 1.21998 1.05103 0.90361 1.02122 1.23654 0.95283 0.84179 0.99523 1.86303 1.46077 1.28831 1.62236 1.19450 0.88587 0.92054 1.01747 1.20767 1.02054 0.89493 1.03206 1.21315 0.92621 1.00709 0.98143 1.21351 0.99271 0.94470 0.98423 1.20801 0.96774 0.93152 1.02772 1.19226 0.95150 0.84795 1.02785 1.86421 1.59295 1.13966 1.60046 0.86386 0.88212 0.86916 0.90844 0.86754 0.96443 0.99110 0.92356 0.90344 0.88895 0.86383 0.85897 0.86663 0.84575 0.81996 0.81595 0.83088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 14.32 67.78 0.97 -3.64 16 2 C -0.19 -5.94 8.74 25.65 0.22 -5.72 16 3 C 0.13 4.57 4.91 85.63 0.42 4.99 16 4 N -0.58 -26.49 2.45 -830.48 -2.03 -28.53 16 5 C 0.27 15.11 5.21 85.63 0.45 15.55 16 6 C -0.54 -31.74 9.39 25.60 0.24 -31.50 16 7 H 0.06 3.36 7.81 -2.91 -0.02 3.33 16 8 C 0.01 0.46 5.46 84.65 0.46 0.92 16 9 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 10 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 11 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 14 C 0.49 21.62 5.91 87.66 0.52 22.14 16 15 O -0.58 -31.38 15.12 10.24 0.15 -31.23 16 16 C 0.07 2.09 0.67 -11.37 -0.01 2.08 16 17 C -0.14 -3.26 8.49 71.98 0.61 -2.65 16 18 C 0.05 1.45 5.55 72.15 0.40 1.85 16 19 O -0.32 -11.61 9.62 -71.72 -0.69 -12.30 16 20 C 0.03 0.88 6.31 22.56 0.14 1.02 16 21 C -0.14 -3.80 9.96 22.37 0.22 -3.57 16 22 C -0.11 -2.31 10.04 22.26 0.22 -2.09 16 23 C -0.12 -2.31 10.04 22.26 0.22 -2.09 16 24 C -0.12 -2.81 7.71 22.37 0.17 -2.64 16 25 C 0.02 0.76 5.31 22.56 0.12 0.88 16 26 O -0.28 -8.36 6.71 -82.63 -0.55 -8.91 16 27 H 0.12 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.10 2.61 7.85 -2.91 -0.02 2.59 16 29 H 0.11 3.61 3.82 -2.91 -0.01 3.60 16 30 H 0.07 2.64 7.79 -2.39 -0.02 2.62 16 31 H 0.11 3.42 3.76 -2.39 -0.01 3.41 16 32 H 0.02 1.03 8.07 -2.39 -0.02 1.01 16 33 H -0.01 -0.61 7.35 -2.39 -0.02 -0.63 16 34 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 35 H 0.08 1.93 6.05 -2.39 -0.01 1.92 16 36 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.12 3.58 7.99 -2.39 -0.02 3.57 16 39 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 42 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 43 H 0.15 3.07 7.51 -2.91 -0.02 3.05 16 Total: -1.00 -79.44 349.01 5.60 -73.84 By element: Atomic # 1 Polarization: 20.73 SS G_CDS: 1.02 Total: 21.75 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: 5.39 Total: -4.45 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -1.75 Total: -85.56 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -1.09 Total: -52.44 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -79.44 5.60 -73.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599961566.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.285 kcal (2) G-P(sol) polarization free energy of solvation -79.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds