Wall clock time and date at job start Tue Mar 31 2020 10:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35316 * 126.12710 * 2 1 4 4 C 1.39872 * 107.91706 * 180.14608 * 3 2 1 5 5 C 1.50701 * 125.89474 * 179.86238 * 4 3 2 6 6 N 1.46499 * 109.46992 * 94.71375 * 5 4 3 7 7 C 1.40012 * 120.00009 * 179.97438 * 6 5 4 8 8 C 1.38643 * 120.09693 * 359.97438 * 7 6 5 9 9 C 1.38291 * 120.00448 * 179.97438 * 8 7 6 10 10 C 1.38261 * 120.20000 * 0.05097 * 9 8 7 11 11 C 1.38252 * 120.20192 * 359.97438 * 10 9 8 12 12 C 1.38723 * 119.99221 * 359.67920 * 11 10 9 13 13 S 1.76193 * 120.10554 * 180.32260 * 12 11 10 14 14 C 1.81402 * 102.99888 * 0.27529 * 13 12 11 15 15 C 1.50699 * 109.47286 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00215 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99885 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99871 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00220 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47073 * 89.99465 * 19 17 15 21 21 H 1.48496 * 109.47058 * 209.99964 * 19 17 15 22 22 H 1.48502 * 109.47092 * 330.00261 * 19 17 15 23 23 N 1.30840 * 108.20428 * 359.59934 * 4 3 2 24 24 N 1.34945 * 126.12723 * 179.70255 * 2 1 3 25 25 C 1.46505 * 126.03615 * 0.02562 * 24 2 1 26 26 H 1.09004 * 109.46915 * 270.29352 * 1 2 3 27 27 H 1.08993 * 109.47161 * 30.29082 * 1 2 3 28 28 H 1.08998 * 109.46542 * 150.29848 * 1 2 3 29 29 H 1.07995 * 126.03948 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.47060 * 214.71587 * 5 4 3 31 31 H 1.09001 * 109.47380 * 334.71675 * 5 4 3 32 32 H 0.97000 * 120.00420 * 0.02562 * 6 5 4 33 33 H 1.08003 * 119.99409 * 359.97438 * 8 7 6 34 34 H 1.07994 * 119.89871 * 180.02562 * 9 8 7 35 35 H 1.08007 * 119.89915 * 179.97438 * 10 9 8 36 36 H 1.08001 * 120.00594 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.47130 * 300.00028 * 14 13 12 38 38 H 1.08999 * 109.47639 * 59.99644 * 14 13 12 39 39 H 0.96996 * 119.99515 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.47297 * 270.01987 * 25 24 2 41 41 H 1.08999 * 109.47017 * 30.02497 * 25 24 2 42 42 H 1.09005 * 109.46942 * 150.01867 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0930 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5394 -0.0075 6 7 5.3203 1.7349 1.3676 7 6 6.4488 2.5247 1.6188 8 6 7.1271 3.1223 0.5676 9 6 8.2412 3.9025 0.8179 10 6 8.6829 4.0884 2.1148 11 6 8.0132 3.4959 3.1693 12 6 6.8905 2.7176 2.9282 13 16 6.0297 1.9681 4.2705 14 6 6.9784 2.5119 5.7179 15 6 6.3576 1.9434 6.9679 16 1 5.4799 1.3179 6.8986 17 6 6.9102 2.2218 8.2001 18 7 6.3681 1.7261 9.2911 19 14 8.4287 3.3031 8.3200 20 1 8.0157 4.7225 8.4613 21 1 9.2307 2.9006 9.5032 22 1 9.2467 3.1457 7.0906 23 7 3.6334 -0.6525 0.0033 24 7 2.3027 -1.0899 0.0057 25 6 1.8539 -2.4846 0.0124 26 1 -0.3633 0.0053 1.0277 27 1 -0.3633 0.8873 -0.5183 28 1 -0.3632 -0.8927 -0.5092 29 1 1.9741 2.1210 0.0004 30 1 5.6423 1.0677 -0.5946 31 1 4.6027 2.5049 -0.4465 32 1 4.8475 1.3165 2.1040 33 1 6.7853 2.9786 -0.4468 34 1 8.7680 4.3675 -0.0021 35 1 9.5538 4.6983 2.3047 36 1 8.3612 3.6429 4.1811 37 1 8.0066 2.1607 5.6313 38 1 6.9695 3.6006 5.7702 39 1 6.7571 1.9217 10.1578 40 1 1.7419 -2.8253 1.0416 41 1 0.8958 -2.5604 -0.5018 42 1 2.5902 -3.1056 -0.4979 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610856008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:48 Heat of formation + Delta-G solvation = 100.225329 kcal Electronic energy + Delta-G solvation = -22728.837163 eV Core-core repulsion = 19415.476066 eV Total energy + Delta-G solvation = -3313.361096 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.48587 -38.96938 -35.80660 -33.56298 -33.07904 -32.23856 -30.80307 -29.85133 -29.20655 -27.32433 -27.17617 -25.11282 -22.80771 -22.51315 -21.11221 -20.57533 -19.55802 -17.67662 -16.89249 -16.70449 -16.23135 -16.01891 -15.65141 -14.54842 -14.50594 -14.39186 -14.18096 -13.78113 -13.68448 -13.53426 -13.36529 -13.19964 -12.99950 -12.83255 -12.67611 -12.58843 -12.43837 -12.28668 -12.02245 -11.59430 -10.97623 -10.84425 -10.75693 -10.35903 -10.16108 -9.88640 -9.67799 -9.37850 -9.14659 -9.09601 -8.72073 -8.68391 -7.51891 -6.37161 -6.21336 -4.24354 1.61768 1.68803 1.93544 2.25820 2.38281 2.53595 3.20948 3.28234 3.29733 3.54128 3.90341 4.16105 4.21867 4.29093 4.34498 4.65492 4.74081 4.87381 5.10211 5.11336 5.13391 5.17123 5.19287 5.33773 5.38449 5.47589 5.55953 5.61744 5.64715 5.80731 5.98006 6.01334 6.22707 6.41950 6.47946 6.54167 6.63946 6.67560 6.80038 6.92270 7.12839 7.37982 7.52960 7.56168 7.94106 8.25342 8.79380 9.34046 10.90534 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.003362 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.260906 B = 8327.568854 C =10187.255217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.079 3.921 3 C -0.257 4.257 4 C 0.060 3.940 5 C 0.213 3.787 6 N -0.738 5.738 7 C 0.229 3.771 8 C -0.188 4.188 9 C -0.091 4.091 10 C -0.160 4.160 11 C -0.092 4.092 12 C -0.143 4.143 13 S -0.139 6.139 14 C 0.034 3.966 15 C -0.518 4.518 16 H 0.084 0.916 17 C 0.082 3.918 18 N -0.890 5.890 19 Si 0.876 3.124 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.264 1.264 23 N -0.276 5.276 24 N -0.371 5.371 25 C 0.099 3.901 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.149 0.851 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.407 0.593 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.041 0.959 38 H 0.037 0.963 39 H 0.268 0.732 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.041 -1.628 -22.732 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.048 4.048 3 C -0.286 4.286 4 C -0.106 4.106 5 C 0.087 3.913 6 N -0.371 5.371 7 C 0.121 3.879 8 C -0.212 4.212 9 C -0.113 4.113 10 C -0.182 4.182 11 C -0.117 4.117 12 C -0.260 4.260 13 S 0.105 5.895 14 C -0.114 4.114 15 C -0.557 4.557 16 H 0.102 0.898 17 C -0.123 4.123 18 N -0.527 5.527 19 Si 0.703 3.297 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.189 1.189 23 N -0.098 5.098 24 N -0.154 5.154 25 C -0.042 4.042 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.088 0.912 29 H 0.167 0.833 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.244 0.756 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.141 0.859 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.451 -3.629 -22.618 24.416 hybrid contribution 1.211 1.801 0.586 2.248 sum -7.240 -1.828 -22.032 23.263 Atomic orbital electron populations 1.20458 0.87201 1.03697 1.03596 1.21109 0.94757 0.87236 1.01701 1.21152 0.91448 0.99245 1.16792 1.22152 0.95523 0.91596 1.01342 1.19430 0.90673 0.96167 0.85030 1.44653 1.30189 1.55341 1.06914 1.17246 0.87499 0.91612 0.91527 1.20445 0.99379 1.04349 0.97067 1.20755 0.95997 0.98133 0.96383 1.20770 1.01443 1.03400 0.92581 1.21061 0.94307 0.96739 0.99625 1.21563 1.01881 1.06597 0.95965 1.85103 1.41650 1.64367 0.98331 1.21664 0.97386 0.99004 0.93336 1.20426 1.14889 1.32793 0.87545 0.89834 1.24834 0.96948 0.95386 0.95125 1.69862 1.40519 1.44202 0.98100 0.86823 0.83329 0.81233 0.78345 1.19725 1.20709 1.18870 1.77397 0.96298 1.12373 1.23767 1.48471 1.03771 1.06127 1.57016 1.21868 1.00858 0.77813 1.03677 0.89942 0.89547 0.91241 0.83322 0.91061 0.90406 0.75636 0.86277 0.86600 0.86705 0.85886 0.94047 0.94488 0.92146 0.90448 0.89553 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 10.12 36.01 0.36 -0.18 16 2 C 0.08 0.81 6.93 -82.26 -0.57 0.24 16 3 C -0.26 -2.97 10.65 -40.01 -0.43 -3.40 16 4 C 0.06 0.79 6.59 -82.40 -0.54 0.25 16 5 C 0.21 2.65 5.48 -5.19 -0.03 2.62 16 6 N -0.74 -11.49 5.68 -59.62 -0.34 -11.83 16 7 C 0.23 3.85 6.66 -83.49 -0.56 3.30 16 8 C -0.19 -2.68 9.31 -39.41 -0.37 -3.05 16 9 C -0.09 -1.25 10.04 -39.55 -0.40 -1.65 16 10 C -0.16 -2.46 10.04 -39.57 -0.40 -2.85 16 11 C -0.09 -1.69 9.36 -39.40 -0.37 -2.06 16 12 C -0.14 -2.77 6.12 -38.92 -0.24 -3.01 16 13 S -0.14 -3.07 20.37 -107.50 -2.19 -5.26 16 14 C 0.03 0.84 3.16 36.01 0.11 0.95 16 15 C -0.52 -14.86 9.68 -34.44 -0.33 -15.19 16 16 H 0.08 2.61 7.96 -52.49 -0.42 2.20 16 17 C 0.08 2.35 5.47 -17.82 -0.10 2.26 16 18 N -0.89 -26.91 13.96 55.43 0.77 -26.14 16 19 Si 0.88 21.09 27.47 -169.99 -4.67 16.42 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.26 -6.08 6.54 56.52 0.37 -5.71 16 23 N -0.28 -3.93 12.58 33.67 0.42 -3.50 16 24 N -0.37 -4.19 4.01 -63.88 -0.26 -4.45 16 25 C 0.10 0.69 11.27 59.85 0.67 1.36 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.29 7.08 -51.93 -0.37 -0.07 16 29 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 30 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 31 H 0.08 0.82 7.96 -51.93 -0.41 0.40 16 32 H 0.41 7.03 7.01 -40.82 -0.29 6.74 16 33 H 0.12 1.38 6.74 -52.48 -0.35 1.03 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.12 2.34 5.88 -52.49 -0.31 2.03 16 37 H 0.04 1.01 6.79 -51.92 -0.35 0.66 16 38 H 0.04 0.89 7.19 -51.92 -0.37 0.52 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.09 0.34 7.05 -51.93 -0.37 -0.02 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -33.64 362.34 -9.74 -43.39 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.78 Total: 6.32 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -3.17 Total: -20.41 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: 0.60 Total: -45.92 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.67 Total: 16.42 kcal Atomic # 16 Polarization: -3.07 SS G_CDS: -2.19 Total: -5.26 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.64 -9.74 -43.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610856008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.613 kcal (2) G-P(sol) polarization free energy of solvation -33.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds