Wall clock time and date at job start Tue Mar 31 2020 10:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35316 * 126.12710 * 2 1 4 4 C 1.39872 * 107.91706 * 180.14608 * 3 2 1 5 5 C 1.50701 * 125.89474 * 179.86238 * 4 3 2 6 6 N 1.46499 * 109.46992 * 94.71375 * 5 4 3 7 7 C 1.40012 * 120.00009 * 179.97438 * 6 5 4 8 8 C 1.38643 * 120.09693 * 359.97438 * 7 6 5 9 9 C 1.38291 * 120.00448 * 179.97438 * 8 7 6 10 10 C 1.38261 * 120.20000 * 0.05097 * 9 8 7 11 11 C 1.38252 * 120.20192 * 359.97438 * 10 9 8 12 12 C 1.38723 * 119.99221 * 359.67920 * 11 10 9 13 13 S 1.76193 * 120.10554 * 180.32260 * 12 11 10 14 14 C 1.81402 * 102.99888 * 0.27529 * 13 12 11 15 15 C 1.50699 * 109.47286 * 180.02562 * 14 13 12 16 16 H 1.07993 * 120.00215 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99885 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99871 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00220 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47073 * 89.99465 * 19 17 15 21 21 H 1.48496 * 109.47058 * 209.99964 * 19 17 15 22 22 H 1.48502 * 109.47092 * 330.00261 * 19 17 15 23 23 N 1.30840 * 108.20428 * 359.59934 * 4 3 2 24 24 N 1.34945 * 126.12723 * 179.70255 * 2 1 3 25 25 C 1.46505 * 126.03615 * 0.02562 * 24 2 1 26 26 H 1.09004 * 109.46915 * 270.29352 * 1 2 3 27 27 H 1.08993 * 109.47161 * 30.29082 * 1 2 3 28 28 H 1.08998 * 109.46542 * 150.29848 * 1 2 3 29 29 H 1.07995 * 126.03948 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.47060 * 214.71587 * 5 4 3 31 31 H 1.09001 * 109.47380 * 334.71675 * 5 4 3 32 32 H 0.97000 * 120.00420 * 0.02562 * 6 5 4 33 33 H 1.08003 * 119.99409 * 359.97438 * 8 7 6 34 34 H 1.07994 * 119.89871 * 180.02562 * 9 8 7 35 35 H 1.08007 * 119.89915 * 179.97438 * 10 9 8 36 36 H 1.08001 * 120.00594 * 179.97438 * 11 10 9 37 37 H 1.09004 * 109.47130 * 300.00028 * 14 13 12 38 38 H 1.08999 * 109.47639 * 59.99644 * 14 13 12 39 39 H 0.96996 * 119.99515 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.47297 * 270.01987 * 25 24 2 41 41 H 1.08999 * 109.47017 * 30.02497 * 25 24 2 42 42 H 1.09005 * 109.46942 * 150.01867 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3049 1.0930 0.0000 4 6 3.6335 0.6559 -0.0034 5 6 4.8543 1.5394 -0.0075 6 7 5.3203 1.7349 1.3676 7 6 6.4488 2.5247 1.6188 8 6 7.1271 3.1223 0.5676 9 6 8.2412 3.9025 0.8179 10 6 8.6829 4.0884 2.1148 11 6 8.0132 3.4959 3.1693 12 6 6.8905 2.7176 2.9282 13 16 6.0297 1.9681 4.2705 14 6 6.9784 2.5119 5.7179 15 6 6.3576 1.9434 6.9679 16 1 5.4799 1.3179 6.8986 17 6 6.9102 2.2218 8.2001 18 7 6.3681 1.7261 9.2911 19 14 8.4287 3.3031 8.3200 20 1 8.0157 4.7225 8.4613 21 1 9.2307 2.9006 9.5032 22 1 9.2467 3.1457 7.0906 23 7 3.6334 -0.6525 0.0033 24 7 2.3027 -1.0899 0.0057 25 6 1.8539 -2.4846 0.0124 26 1 -0.3633 0.0053 1.0277 27 1 -0.3633 0.8873 -0.5183 28 1 -0.3632 -0.8927 -0.5092 29 1 1.9741 2.1210 0.0004 30 1 5.6423 1.0677 -0.5946 31 1 4.6027 2.5049 -0.4465 32 1 4.8475 1.3165 2.1040 33 1 6.7853 2.9786 -0.4468 34 1 8.7680 4.3675 -0.0021 35 1 9.5538 4.6983 2.3047 36 1 8.3612 3.6429 4.1811 37 1 8.0066 2.1607 5.6313 38 1 6.9695 3.6006 5.7702 39 1 6.7571 1.9217 10.1578 40 1 1.7419 -2.8253 1.0416 41 1 0.8958 -2.5604 -0.5018 42 1 2.5902 -3.1056 -0.4979 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610856008.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:48 Heat of formation + Delta-G solvation = 79.348904 kcal Electronic energy + Delta-G solvation = -22729.742432 eV Core-core repulsion = 19415.476066 eV Total energy + Delta-G solvation = -3314.266366 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 317.126 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.31757 -40.18452 -36.88585 -35.29114 -34.40961 -32.92155 -32.18153 -31.39041 -30.70148 -28.21621 -27.92327 -26.02856 -24.80769 -23.75198 -22.39020 -21.42299 -20.42842 -19.36425 -18.54472 -17.69180 -17.47255 -17.11214 -16.60546 -16.32577 -15.71800 -15.47043 -15.23459 -14.99379 -14.87045 -14.85554 -14.71878 -14.39421 -14.19723 -13.98999 -13.67709 -13.44166 -13.35278 -13.15781 -13.00455 -12.79165 -12.71556 -12.41476 -12.16900 -11.94251 -11.65162 -11.64089 -11.02586 -10.96093 -10.88198 -10.45683 -10.22438 -9.51615 -8.84345 -8.43020 -7.89772 -6.53633 0.42957 0.71258 0.74188 0.85783 1.30758 1.32579 1.43271 1.53192 1.56990 1.85077 2.25172 2.75253 2.89615 2.94170 3.43012 3.66885 3.95968 3.98947 4.23162 4.25955 4.33235 4.41023 4.42973 4.51832 4.55212 4.57778 4.60220 4.64408 4.73888 4.76870 4.77126 4.83260 5.01965 5.05818 5.22561 5.23416 5.29896 5.49464 5.55989 5.72064 5.96921 6.00186 6.09836 6.40440 6.49095 6.62008 6.65968 7.09294 8.72706 Molecular weight = 317.13amu Principal moments of inertia in cm(-1) A = 0.012191 B = 0.003362 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2296.260906 B = 8327.568854 C =10187.255217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.082 3.918 3 C -0.281 4.281 4 C 0.046 3.954 5 C 0.214 3.786 6 N -0.743 5.743 7 C 0.223 3.777 8 C -0.183 4.183 9 C -0.073 4.073 10 C -0.163 4.163 11 C -0.109 4.109 12 C -0.173 4.173 13 S -0.172 6.172 14 C 0.045 3.955 15 C -0.534 4.534 16 H 0.038 0.962 17 C 0.025 3.975 18 N -0.935 5.935 19 Si 0.949 3.051 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.248 1.248 23 N -0.322 5.322 24 N -0.376 5.376 25 C 0.089 3.911 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.161 0.839 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.394 0.606 33 H 0.152 0.848 34 H 0.159 0.841 35 H 0.141 0.859 36 H 0.108 0.892 37 H 0.042 0.958 38 H 0.042 0.958 39 H 0.274 0.726 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.241 -0.033 -25.756 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C -0.310 4.310 4 C -0.119 4.119 5 C 0.089 3.911 6 N -0.373 5.373 7 C 0.114 3.886 8 C -0.208 4.208 9 C -0.094 4.094 10 C -0.185 4.185 11 C -0.134 4.134 12 C -0.290 4.290 13 S 0.070 5.930 14 C -0.104 4.104 15 C -0.573 4.573 16 H 0.056 0.944 17 C -0.176 4.176 18 N -0.574 5.574 19 Si 0.771 3.229 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.171 1.171 23 N -0.146 5.146 24 N -0.159 5.159 25 C -0.051 4.051 26 H 0.105 0.895 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.179 0.821 30 H 0.095 0.905 31 H 0.119 0.881 32 H 0.228 0.772 33 H 0.170 0.830 34 H 0.177 0.823 35 H 0.159 0.841 36 H 0.126 0.874 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.139 0.861 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.649 -2.037 -25.688 26.880 hybrid contribution 0.850 1.227 1.372 2.027 sum -6.799 -0.810 -24.316 25.262 Atomic orbital electron populations 1.20613 0.84071 1.05597 1.04392 1.21785 0.96614 0.86560 0.99613 1.21454 0.91191 1.00442 1.17915 1.22334 0.96388 0.91573 1.01590 1.19609 0.90756 0.97313 0.83384 1.44823 1.29834 1.54860 1.07792 1.17505 0.87966 0.91867 0.91216 1.20874 0.98976 1.03185 0.97720 1.21276 0.95002 0.96246 0.96882 1.21095 1.01886 1.03076 0.92440 1.21126 0.94618 0.97553 1.00086 1.21482 1.03213 1.08940 0.95328 1.85033 1.42702 1.65966 0.99252 1.21356 0.97240 0.98846 0.92909 1.20599 1.13992 1.32666 0.90001 0.94381 1.25846 1.00613 0.96791 0.94367 1.70004 1.42576 1.45852 0.98955 0.85676 0.78799 0.79296 0.79144 1.18319 1.19789 1.17112 1.77290 0.98558 1.13156 1.25600 1.48825 1.03064 1.07735 1.56304 1.22206 1.02490 0.75974 1.04408 0.89491 0.88071 0.88967 0.82137 0.90546 0.88082 0.77169 0.83047 0.82294 0.84087 0.87382 0.93983 0.93948 0.91641 0.90233 0.86068 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 10.12 71.24 0.72 -0.14 16 2 C 0.08 1.60 6.93 41.41 0.29 1.88 16 3 C -0.28 -6.36 10.65 21.99 0.23 -6.12 16 4 C 0.05 1.22 6.59 43.10 0.28 1.50 16 5 C 0.21 5.13 5.48 85.63 0.47 5.59 16 6 N -0.74 -23.09 5.68 -342.53 -1.94 -25.03 16 7 C 0.22 7.27 6.66 38.24 0.25 7.53 16 8 C -0.18 -4.60 9.31 22.38 0.21 -4.40 16 9 C -0.07 -1.68 10.04 22.29 0.22 -1.45 16 10 C -0.16 -4.49 10.04 22.28 0.22 -4.27 16 11 C -0.11 -3.92 9.36 22.39 0.21 -3.71 16 12 C -0.17 -6.71 6.12 22.70 0.14 -6.57 16 13 S -0.17 -7.98 20.37 -56.49 -1.15 -9.13 16 14 C 0.04 2.27 3.16 71.24 0.23 2.49 16 15 C -0.53 -32.21 9.68 25.60 0.25 -31.97 16 16 H 0.04 2.57 7.96 -2.91 -0.02 2.54 16 17 C 0.02 1.45 5.47 84.66 0.46 1.91 16 18 N -0.94 -58.61 13.96 21.45 0.30 -58.31 16 19 Si 0.95 43.83 27.47 68.60 1.88 45.71 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 23 N -0.32 -9.32 12.58 -47.38 -0.60 -9.91 16 24 N -0.38 -8.32 4.01 -356.01 -1.43 -9.75 16 25 C 0.09 1.14 11.27 127.77 1.44 2.58 16 26 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.09 0.48 7.08 -2.39 -0.02 0.46 16 29 H 0.16 3.03 8.06 -2.91 -0.02 3.00 16 30 H 0.08 1.72 7.95 -2.39 -0.02 1.70 16 31 H 0.10 1.90 7.96 -2.39 -0.02 1.88 16 32 H 0.39 14.19 7.01 -92.71 -0.65 13.54 16 33 H 0.15 2.81 6.74 -2.91 -0.02 2.79 16 34 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.11 4.10 5.88 -2.91 -0.02 4.08 16 37 H 0.04 2.10 6.79 -2.39 -0.02 2.08 16 38 H 0.04 2.08 7.19 -2.39 -0.02 2.06 16 39 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.12 0.65 7.05 -2.39 -0.02 0.64 16 42 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -77.90 362.34 3.03 -74.88 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 0.33 Total: 26.66 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 5.63 Total: -35.12 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -3.67 Total: -103.00 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Atomic # 16 Polarization: -7.98 SS G_CDS: -1.15 Total: -9.13 kcal Total: -77.90 3.03 -74.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610856008.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.224 kcal (2) G-P(sol) polarization free energy of solvation -77.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds