Wall clock time and date at job start Tue Mar 31 2020 11:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.51491 * 2 1 4 4 C 1.53581 * 109.49282 * 120.07347 * 2 1 3 5 5 C 1.51839 * 107.15122 * 61.27652 * 4 2 1 6 6 O 1.21300 * 121.73832 * 220.04801 * 5 4 2 7 7 C 1.47374 * 116.52552 * 40.07022 * 5 4 2 8 8 C 1.39725 * 120.69947 * 168.02647 * 7 5 4 9 9 C 1.37823 * 119.72509 * 179.76475 * 8 7 5 10 10 C 1.38572 * 120.25995 * 359.72460 * 9 8 7 11 11 C 1.38558 * 120.62980 * 0.62674 * 10 9 8 12 12 N 1.40138 * 120.02378 * 179.72548 * 11 10 9 13 13 C 1.34778 * 119.99888 * 34.71922 * 12 11 10 14 14 O 1.21297 * 119.99884 * 355.51314 * 13 12 11 15 15 C 1.50697 * 120.00032 * 175.50363 * 13 12 11 16 16 C 1.53002 * 109.47058 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.46868 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00068 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99365 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00416 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99322 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47481 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46905 * 120.00313 * 21 19 17 24 24 H 1.48495 * 109.46893 * 239.99720 * 21 19 17 25 25 C 1.39463 * 119.95368 * 359.45926 * 11 10 9 26 26 O 1.35380 * 120.00488 * 179.78256 * 25 11 10 27 27 H 1.08996 * 109.47005 * 299.92544 * 1 2 3 28 28 H 1.09002 * 109.47359 * 59.92771 * 1 2 3 29 29 H 1.08999 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46900 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47458 * 300.07070 * 3 2 1 32 32 H 1.08999 * 109.46926 * 60.07648 * 3 2 1 33 33 H 1.08992 * 109.92126 * 301.86297 * 4 2 1 34 34 H 1.09006 * 109.91215 * 180.68169 * 4 2 1 35 35 H 1.07997 * 120.13836 * 359.74703 * 8 7 5 36 36 H 1.08001 * 119.86472 * 180.02562 * 9 8 7 37 37 H 1.07993 * 119.68525 * 180.35281 * 10 9 8 38 38 H 0.97007 * 120.00538 * 214.71780 * 12 11 10 39 39 H 1.08999 * 109.47394 * 300.00527 * 15 13 12 40 40 H 1.08999 * 109.47037 * 60.00324 * 15 13 12 41 41 H 1.09004 * 109.46946 * 300.00074 * 16 15 13 42 42 H 1.08996 * 109.47336 * 60.00622 * 16 15 13 43 43 H 0.96997 * 119.99901 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 6 2.0425 -0.7255 1.2529 5 6 1.5346 -2.1547 1.1819 6 8 1.1298 -2.7376 2.1656 7 6 1.5596 -2.7970 -0.1442 8 6 1.3527 -4.1727 -0.2746 9 6 1.3755 -4.7517 -1.5251 10 6 1.5969 -3.9743 -2.6506 11 6 1.8107 -2.6102 -2.5355 12 7 2.0390 -1.8370 -3.6818 13 6 1.4146 -2.1430 -4.8364 14 8 0.7189 -3.1343 -4.9054 15 6 1.5805 -1.2534 -6.0414 16 6 0.7727 -1.8218 -7.2100 17 6 0.9391 -0.9325 -8.4152 18 1 1.5593 -0.0505 -8.3540 19 6 0.3003 -1.2456 -9.5964 20 7 -0.4545 -2.3199 -9.6710 21 14 0.5060 -0.1429 -11.0901 22 1 1.3989 0.9931 -10.7476 23 1 1.1037 -0.9236 -12.2031 24 1 -0.8206 0.3778 -11.5073 25 6 1.7931 -2.0062 -1.2786 26 8 2.0063 -0.6742 -1.1645 27 1 -0.3633 0.5127 0.8906 28 1 -0.3634 0.5150 -0.8893 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1311 1.4412 -0.0005 31 1 1.6772 1.9566 -0.8893 32 1 1.6793 1.9557 0.8907 33 1 1.6565 -0.2382 2.1482 34 1 3.1325 -0.7190 1.2659 35 1 1.1759 -4.7798 0.6009 36 1 1.2154 -5.8148 -1.6285 37 1 1.6072 -4.4368 -3.6265 38 1 2.6465 -1.0816 -3.6444 39 1 1.2219 -0.2515 -5.8056 40 1 2.6342 -1.2069 -6.3163 41 1 1.1309 -2.8238 -7.4459 42 1 -0.2810 -1.8680 -6.9349 43 1 -0.9042 -2.5399 -10.5018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000634232014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:53 Heat of formation + Delta-G solvation = -94.623289 kcal Electronic energy + Delta-G solvation = -26355.039858 eV Core-core repulsion = 22558.183869 eV Total energy + Delta-G solvation = -3796.855988 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.59709 -39.82821 -38.71750 -37.77143 -34.77816 -34.14013 -33.53340 -31.44029 -31.02640 -29.36024 -28.58960 -27.80086 -25.79006 -24.28892 -22.91500 -22.18394 -21.14391 -20.03946 -19.12312 -18.28435 -17.37382 -17.00370 -16.44685 -15.86461 -15.62307 -15.55040 -15.37710 -14.96227 -14.91251 -14.59840 -14.44729 -14.13868 -13.49850 -13.37851 -13.14824 -12.86342 -12.67439 -12.49649 -12.37900 -12.24326 -12.09248 -12.00889 -11.96183 -11.31458 -11.21376 -10.99759 -10.98066 -10.61810 -10.33691 -10.03100 -9.98986 -9.72629 -9.25997 -9.09731 -8.77774 -8.36734 -7.92751 -6.00140 -4.04676 0.46128 1.15300 2.10253 2.67176 3.01511 3.24100 3.30312 3.37947 3.40972 3.59191 3.69546 4.04983 4.27417 4.32397 4.44168 4.57621 4.71171 4.92104 4.98063 5.07570 5.16340 5.20745 5.22867 5.30086 5.32318 5.35234 5.38214 5.58515 5.62900 5.68515 5.77683 5.93799 6.05919 6.12523 6.16944 6.30949 6.44442 6.70860 6.79627 7.11029 7.17880 7.64487 7.69993 7.79175 8.01448 8.32184 8.55217 9.03432 9.59273 11.10781 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020401 B = 0.002913 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.153116 B = 9608.558505 C =10605.219145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.125 3.875 3 C -0.139 4.139 4 C -0.192 4.192 5 C 0.407 3.593 6 O -0.450 6.450 7 C -0.239 4.239 8 C -0.050 4.050 9 C -0.143 4.143 10 C -0.059 4.059 11 C 0.120 3.880 12 N -0.677 5.677 13 C 0.511 3.489 14 O -0.517 6.517 15 C -0.128 4.128 16 C 0.036 3.964 17 C -0.527 4.527 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.152 3.848 26 O -0.303 6.303 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.155 0.845 38 H 0.413 0.587 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.191 4.523 23.143 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.087 3.913 3 C -0.196 4.196 4 C -0.230 4.230 5 C 0.285 3.715 6 O -0.325 6.325 7 C -0.241 4.241 8 C -0.069 4.069 9 C -0.162 4.162 10 C -0.080 4.080 11 C 0.025 3.975 12 N -0.324 5.324 13 C 0.301 3.699 14 O -0.391 6.391 15 C -0.167 4.167 16 C -0.001 4.001 17 C -0.566 4.566 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.527 5.527 21 Si 0.721 3.279 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.210 1.210 25 C 0.104 3.896 26 O -0.217 6.217 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.127 0.873 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.152 0.848 37 H 0.172 0.828 38 H 0.249 0.751 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.428 3.592 23.273 24.410 hybrid contribution 0.264 0.863 -0.691 1.136 sum 6.693 4.455 22.582 23.971 Atomic orbital electron populations 1.22500 0.93948 1.03580 1.04050 1.21905 0.94304 0.92936 0.82145 1.21817 1.02448 0.91529 1.03771 1.23132 1.04214 0.95129 1.00546 1.22363 0.73443 0.88560 0.87111 1.90544 1.36210 1.66959 1.38806 1.20258 1.14759 0.95516 0.93603 1.21090 0.95030 0.92623 0.98171 1.21037 1.03154 1.00575 0.91438 1.21566 0.94689 0.90872 1.00870 1.17256 1.05241 0.90904 0.84092 1.43767 1.47320 1.33001 1.08289 1.21861 0.77596 0.86630 0.83827 1.90658 1.37954 1.27234 1.83253 1.21903 1.03522 0.98408 0.92910 1.18927 0.95208 0.96490 0.89486 1.21234 1.29681 1.09796 0.95867 0.92484 1.25024 0.95198 0.95260 0.98891 1.69999 1.30876 1.25189 1.26680 0.86531 0.77871 0.80637 0.82901 1.19722 1.21003 1.21010 1.18804 0.96306 0.82536 0.91971 1.85739 1.74894 1.17704 1.43349 0.90415 0.90386 0.91864 0.91048 0.90582 0.90004 0.87258 0.86892 0.84842 0.84769 0.82781 0.75135 0.89778 0.89777 0.95692 0.95724 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.60 8.30 37.16 0.31 -1.29 16 2 C 0.12 1.03 1.11 -90.32 -0.10 0.93 16 3 C -0.14 -0.78 8.85 37.16 0.33 -0.46 16 4 C -0.19 -1.51 5.28 -27.02 -0.14 -1.65 16 5 C 0.41 4.60 5.89 -30.03 -0.18 4.43 16 6 O -0.45 -6.14 17.42 5.54 0.10 -6.04 16 7 C -0.24 -2.92 5.25 -104.87 -0.55 -3.47 16 8 C -0.05 -0.60 9.65 -39.18 -0.38 -0.97 16 9 C -0.14 -1.73 10.03 -39.61 -0.40 -2.13 16 10 C -0.06 -0.86 8.68 -39.34 -0.34 -1.20 16 11 C 0.12 1.72 6.32 -83.48 -0.53 1.19 16 12 N -0.68 -9.70 5.19 -9.74 -0.05 -9.75 16 13 C 0.51 9.35 7.67 -10.99 -0.08 9.27 16 14 O -0.52 -11.33 13.40 5.54 0.07 -11.26 16 15 C -0.13 -2.45 5.64 -27.88 -0.16 -2.61 16 16 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 17 C -0.53 -14.59 9.11 -34.43 -0.31 -14.90 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 21 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 25 C 0.15 1.92 6.03 -38.37 -0.23 1.68 16 26 O -0.30 -3.28 9.18 -17.83 -0.16 -3.45 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.68 6.42 -51.93 -0.33 0.35 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.13 1.41 7.81 -52.49 -0.41 1.00 16 36 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.15 2.47 6.17 -52.49 -0.32 2.15 16 38 H 0.41 4.75 8.56 -40.82 -0.35 4.40 16 39 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -34.03 359.42 -7.92 -41.95 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.03 Total: 1.85 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -2.98 Total: -8.80 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.69 Total: -35.95 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.01 Total: -20.75 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.03 -7.92 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000634232014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.672 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds