Wall clock time and date at job start Tue Mar 31 2020 11:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.51491 * 2 1 4 4 C 1.53581 * 109.49282 * 120.07347 * 2 1 3 5 5 C 1.51839 * 107.15122 * 61.27652 * 4 2 1 6 6 O 1.21300 * 121.73832 * 220.04801 * 5 4 2 7 7 C 1.47374 * 116.52552 * 40.07022 * 5 4 2 8 8 C 1.39725 * 120.69947 * 168.02647 * 7 5 4 9 9 C 1.37823 * 119.72509 * 179.76475 * 8 7 5 10 10 C 1.38572 * 120.25995 * 359.72460 * 9 8 7 11 11 C 1.38558 * 120.62980 * 0.62674 * 10 9 8 12 12 N 1.40138 * 120.02378 * 179.72548 * 11 10 9 13 13 C 1.34778 * 119.99888 * 34.71922 * 12 11 10 14 14 O 1.21297 * 119.99884 * 355.51314 * 13 12 11 15 15 C 1.50697 * 120.00032 * 175.50363 * 13 12 11 16 16 C 1.53002 * 109.47058 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.46868 * 180.02562 * 16 15 13 18 18 H 1.07997 * 120.00068 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99365 * 179.97438 * 17 16 15 20 20 N 1.31510 * 120.00416 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99322 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47481 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46905 * 120.00313 * 21 19 17 24 24 H 1.48495 * 109.46893 * 239.99720 * 21 19 17 25 25 C 1.39463 * 119.95368 * 359.45926 * 11 10 9 26 26 O 1.35380 * 120.00488 * 179.78256 * 25 11 10 27 27 H 1.08996 * 109.47005 * 299.92544 * 1 2 3 28 28 H 1.09002 * 109.47359 * 59.92771 * 1 2 3 29 29 H 1.08999 * 109.47059 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46900 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47458 * 300.07070 * 3 2 1 32 32 H 1.08999 * 109.46926 * 60.07648 * 3 2 1 33 33 H 1.08992 * 109.92126 * 301.86297 * 4 2 1 34 34 H 1.09006 * 109.91215 * 180.68169 * 4 2 1 35 35 H 1.07997 * 120.13836 * 359.74703 * 8 7 5 36 36 H 1.08001 * 119.86472 * 180.02562 * 9 8 7 37 37 H 1.07993 * 119.68525 * 180.35281 * 10 9 8 38 38 H 0.97007 * 120.00538 * 214.71780 * 12 11 10 39 39 H 1.08999 * 109.47394 * 300.00527 * 15 13 12 40 40 H 1.08999 * 109.47037 * 60.00324 * 15 13 12 41 41 H 1.09004 * 109.46946 * 300.00074 * 16 15 13 42 42 H 1.08996 * 109.47336 * 60.00622 * 16 15 13 43 43 H 0.96997 * 119.99901 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 6 2.0425 -0.7255 1.2529 5 6 1.5346 -2.1547 1.1819 6 8 1.1298 -2.7376 2.1656 7 6 1.5596 -2.7970 -0.1442 8 6 1.3527 -4.1727 -0.2746 9 6 1.3755 -4.7517 -1.5251 10 6 1.5969 -3.9743 -2.6506 11 6 1.8107 -2.6102 -2.5355 12 7 2.0390 -1.8370 -3.6818 13 6 1.4146 -2.1430 -4.8364 14 8 0.7189 -3.1343 -4.9054 15 6 1.5805 -1.2534 -6.0414 16 6 0.7727 -1.8218 -7.2100 17 6 0.9391 -0.9325 -8.4152 18 1 1.5593 -0.0505 -8.3540 19 6 0.3003 -1.2456 -9.5964 20 7 -0.4545 -2.3199 -9.6710 21 14 0.5060 -0.1429 -11.0901 22 1 1.3989 0.9931 -10.7476 23 1 1.1037 -0.9236 -12.2031 24 1 -0.8206 0.3778 -11.5073 25 6 1.7931 -2.0062 -1.2786 26 8 2.0063 -0.6742 -1.1645 27 1 -0.3633 0.5127 0.8906 28 1 -0.3634 0.5150 -0.8893 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1311 1.4412 -0.0005 31 1 1.6772 1.9566 -0.8893 32 1 1.6793 1.9557 0.8907 33 1 1.6565 -0.2382 2.1482 34 1 3.1325 -0.7190 1.2659 35 1 1.1759 -4.7798 0.6009 36 1 1.2154 -5.8148 -1.6285 37 1 1.6072 -4.4368 -3.6265 38 1 2.6465 -1.0816 -3.6444 39 1 1.2219 -0.2515 -5.8056 40 1 2.6342 -1.2069 -6.3163 41 1 1.1309 -2.8238 -7.4459 42 1 -0.2810 -1.8680 -6.9349 43 1 -0.9042 -2.5399 -10.5018 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000634232014.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:53 Heat of formation + Delta-G solvation = -116.343256 kcal Electronic energy + Delta-G solvation = -26355.981706 eV Core-core repulsion = 22558.183869 eV Total energy + Delta-G solvation = -3797.797837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.51086 -41.11375 -39.64121 -38.85343 -35.93831 -35.56544 -34.99682 -33.13341 -32.15181 -30.56690 -29.33305 -28.37455 -27.67040 -25.27794 -24.33965 -23.25803 -22.35695 -21.41351 -20.14070 -19.27895 -18.82672 -18.15974 -17.77768 -17.15050 -16.77518 -16.58807 -16.40957 -16.35334 -16.08527 -15.79385 -15.57173 -15.14268 -14.95917 -14.33448 -14.21932 -14.17003 -13.88933 -13.45445 -13.28861 -13.19766 -13.10471 -12.97128 -12.89960 -12.83248 -12.74674 -12.44536 -12.02428 -11.92888 -11.74059 -11.63961 -11.53944 -11.26919 -10.93191 -10.67312 -10.56429 -9.81903 -9.00512 -8.17332 -6.30752 -0.51640 0.12231 1.15444 1.43650 1.44467 1.57740 1.61888 1.84326 2.02392 2.44248 2.65718 2.79967 3.16326 3.39976 3.53520 3.64797 3.71606 3.82959 4.00133 4.14816 4.15732 4.22262 4.39817 4.47618 4.52807 4.54250 4.58371 4.67038 4.75290 4.88557 4.89187 4.93419 5.06027 5.09298 5.10371 5.29397 5.31709 5.36857 5.51577 5.63751 5.65342 5.86176 6.17962 6.21451 6.27833 6.42326 6.87566 7.17830 7.39462 8.95370 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.020401 B = 0.002913 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.153116 B = 9608.558505 C =10605.219145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.118 3.882 3 C -0.134 4.134 4 C -0.184 4.184 5 C 0.408 3.592 6 O -0.477 6.477 7 C -0.250 4.250 8 C -0.048 4.048 9 C -0.143 4.143 10 C -0.076 4.076 11 C 0.094 3.906 12 N -0.655 5.655 13 C 0.514 3.486 14 O -0.563 6.563 15 C -0.115 4.115 16 C 0.042 3.958 17 C -0.541 4.541 18 H 0.077 0.923 19 C -0.007 4.007 20 N -0.937 5.937 21 Si 0.972 3.028 22 H -0.252 1.252 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.165 3.835 26 O -0.306 6.306 27 H 0.101 0.899 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.148 0.852 36 H 0.155 0.845 37 H 0.131 0.869 38 H 0.428 0.572 39 H 0.108 0.892 40 H 0.111 0.889 41 H -0.014 1.014 42 H -0.017 1.017 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.786 7.404 24.721 27.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.081 3.919 3 C -0.191 4.191 4 C -0.221 4.221 5 C 0.288 3.712 6 O -0.354 6.354 7 C -0.252 4.252 8 C -0.067 4.067 9 C -0.161 4.161 10 C -0.096 4.096 11 C 0.000 4.000 12 N -0.302 5.302 13 C 0.304 3.696 14 O -0.441 6.441 15 C -0.155 4.155 16 C 0.004 3.996 17 C -0.578 4.578 18 H 0.095 0.905 19 C -0.204 4.204 20 N -0.577 5.577 21 Si 0.796 3.204 22 H -0.175 1.175 23 H -0.207 1.207 24 H -0.208 1.208 25 C 0.116 3.884 26 O -0.220 6.220 27 H 0.120 0.880 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.125 0.875 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.165 0.835 36 H 0.172 0.828 37 H 0.149 0.851 38 H 0.267 0.733 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.005 0.995 42 H 0.002 0.998 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.070 6.522 24.894 26.970 hybrid contribution -0.251 -0.060 -1.060 1.091 sum 7.819 6.462 23.834 25.903 Atomic orbital electron populations 1.22545 0.94538 1.02157 1.05006 1.22254 0.93991 0.94225 0.81385 1.21871 1.03089 0.89320 1.04833 1.23183 1.05360 0.92326 1.01210 1.22765 0.72540 0.89953 0.85985 1.90539 1.37538 1.68001 1.39313 1.20572 1.14441 0.95798 0.94428 1.21334 0.93978 0.92966 0.98403 1.21214 1.02590 1.01475 0.90856 1.21508 0.95892 0.91570 1.00641 1.17364 1.07151 0.91005 0.84516 1.43346 1.46509 1.33092 1.07277 1.21596 0.77432 0.85838 0.84697 1.90654 1.40269 1.29063 1.84109 1.21652 1.03870 0.98989 0.90974 1.18707 0.93736 0.94988 0.92168 1.21735 1.29451 1.10316 0.96342 0.90501 1.26110 0.94750 0.96783 1.02775 1.70174 1.32276 1.27535 1.27725 0.85298 0.78095 0.78826 0.78180 1.17528 1.20745 1.20788 1.18668 0.95088 0.83475 0.91145 1.85753 1.74692 1.16593 1.44983 0.87981 0.91017 0.94393 0.90071 0.90993 0.87498 0.84843 0.84870 0.83462 0.82775 0.85088 0.73322 0.87414 0.87104 0.99523 0.99813 0.92910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.88 8.30 71.98 0.60 -2.28 16 2 C 0.12 1.62 1.11 -10.60 -0.01 1.61 16 3 C -0.13 -1.01 8.85 71.98 0.64 -0.37 16 4 C -0.18 -2.26 5.28 30.41 0.16 -2.10 16 5 C 0.41 8.47 5.89 28.46 0.17 8.64 16 6 O -0.48 -12.32 17.42 -3.09 -0.05 -12.37 16 7 C -0.25 -5.88 5.25 -20.03 -0.11 -5.99 16 8 C -0.05 -1.11 9.65 22.53 0.22 -0.90 16 9 C -0.14 -3.48 10.03 22.25 0.22 -3.26 16 10 C -0.08 -2.27 8.68 22.43 0.19 -2.08 16 11 C 0.09 2.71 6.32 38.18 0.24 2.95 16 12 N -0.66 -18.64 5.19 -303.12 -1.57 -20.21 16 13 C 0.51 19.31 7.67 87.66 0.67 19.98 16 14 O -0.56 -26.25 13.40 -3.08 -0.04 -26.29 16 15 C -0.12 -4.42 5.64 29.85 0.17 -4.25 16 16 C 0.04 2.25 4.26 29.85 0.13 2.38 16 17 C -0.54 -30.06 9.11 25.60 0.23 -29.83 16 18 H 0.08 3.88 7.74 -2.91 -0.02 3.86 16 19 C -0.01 -0.39 5.46 84.66 0.46 0.08 16 20 N -0.94 -58.72 13.29 21.45 0.28 -58.44 16 21 Si 0.97 43.68 29.54 68.60 2.03 45.71 16 22 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 25 C 0.17 4.01 6.03 23.05 0.14 4.15 16 26 O -0.31 -6.03 9.18 -86.72 -0.80 -6.82 16 27 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.04 0.78 6.42 -2.39 -0.02 0.76 16 30 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.13 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.15 2.98 7.81 -2.91 -0.02 2.96 16 36 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 37 H 0.13 4.56 6.17 -2.91 -0.02 4.54 16 38 H 0.43 9.23 8.56 -92.70 -0.79 8.43 16 39 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 40 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 41 H -0.01 -0.83 8.10 -2.39 -0.02 -0.85 16 42 H -0.02 -1.02 8.10 -2.39 -0.02 -1.04 16 43 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -77.85 359.42 4.21 -73.64 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.24 Total: 16.06 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 4.13 Total: -11.27 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -1.29 Total: -78.65 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -0.89 Total: -45.49 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -77.85 4.21 -73.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000634232014.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.705 kcal (2) G-P(sol) polarization free energy of solvation -77.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds