Wall clock time and date at job start Tue Mar 31 2020 12:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47266 * 2 1 4 4 C 1.34971 * 120.00034 * 88.36055 * 3 2 1 5 5 C 1.46229 * 120.00233 * 351.19348 * 4 3 2 6 6 O 1.21756 * 120.00030 * 353.53511 * 5 4 3 7 7 N 1.34779 * 119.99907 * 173.52933 * 5 4 3 8 8 C 1.36714 * 119.99554 * 180.02562 * 7 5 4 9 9 H 1.07998 * 120.00618 * 17.42386 * 8 7 5 10 10 C 1.39130 * 119.99898 * 197.42883 * 8 7 5 11 11 N 1.31323 * 119.99665 * 12.64459 * 10 8 7 12 12 Si 1.86791 * 120.00219 * 192.64466 * 10 8 7 13 13 H 1.48506 * 109.47459 * 59.99685 * 12 10 8 14 14 H 1.48506 * 109.47355 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47471 * 299.99986 * 12 10 8 16 16 C 1.46501 * 120.00409 * 0.02562 * 7 5 4 17 17 C 1.50703 * 109.46955 * 82.60973 * 16 7 5 18 18 O 1.20826 * 119.99944 * 0.02562 * 17 16 7 19 19 O 1.34225 * 119.99603 * 180.02562 * 17 16 7 20 20 C 1.47145 * 119.99863 * 268.36415 * 3 2 1 21 21 C 1.39882 * 120.17403 * 64.72115 * 20 3 2 22 22 C 1.37872 * 119.82222 * 179.78778 * 21 20 3 23 23 C 1.38414 * 120.17588 * 0.49425 * 22 21 20 24 24 C 1.50698 * 119.82370 * 179.76155 * 23 22 21 25 25 C 1.38411 * 120.34729 * 359.73459 * 23 22 21 26 26 C 1.37873 * 120.18180 * 0.02799 * 25 23 22 27 27 H 1.08998 * 109.46901 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47155 * 300.00083 * 1 2 3 29 29 H 1.08992 * 109.47356 * 60.00151 * 1 2 3 30 30 H 1.09002 * 109.46885 * 120.00033 * 2 1 3 31 31 H 1.09003 * 109.46895 * 239.99476 * 2 1 3 32 32 H 1.08008 * 120.00024 * 171.19115 * 4 3 2 33 33 H 0.97006 * 119.99826 * 180.02562 * 11 10 8 34 34 H 1.08996 * 109.47263 * 202.61208 * 16 7 5 35 35 H 1.09005 * 109.46411 * 322.61303 * 16 7 5 36 36 H 0.96701 * 116.99838 * 180.02562 * 19 17 16 37 37 H 1.08001 * 120.08382 * 0.02562 * 21 20 3 38 38 H 1.08004 * 119.91308 * 180.22492 * 22 21 20 39 39 H 1.08997 * 109.47228 * 269.97078 * 24 23 22 40 40 H 1.09003 * 109.47463 * 29.97964 * 24 23 22 41 41 H 1.09002 * 109.46795 * 149.97703 * 24 23 22 42 42 H 1.08012 * 119.90861 * 180.02562 * 25 23 22 43 43 H 1.07995 * 120.09590 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2258 2.0682 1.1684 5 6 1.7698 1.4677 2.4213 6 8 1.1127 0.4429 2.4015 7 7 2.0768 2.0487 3.5980 8 6 1.6508 1.4870 4.7694 9 1 1.3227 0.4582 4.7870 10 6 1.6398 2.2407 5.9388 11 7 1.7962 3.5434 5.8817 12 14 1.4028 1.3999 7.5898 13 1 2.4952 0.4175 7.8064 14 1 1.4304 2.4167 8.6717 15 1 0.0949 0.6967 7.6040 16 6 2.8670 3.2821 3.6219 17 6 1.9622 4.4631 3.3814 18 8 0.7787 4.2920 3.2082 19 8 2.4712 5.7049 3.3595 20 6 2.3119 2.1023 -1.2738 21 6 1.2729 2.3682 -2.1718 22 6 1.5423 3.0110 -3.3613 23 6 2.8384 3.3840 -3.6726 24 6 3.1247 4.0814 -4.9774 25 6 3.8727 3.1201 -2.7915 26 6 3.6190 2.4824 -1.5957 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 2.7175 3.0298 1.1780 33 1 1.7889 4.0689 6.6971 34 1 3.3492 3.3859 4.5939 35 1 3.6270 3.2418 2.8416 36 1 1.8517 6.4305 3.2020 37 1 0.2617 2.0741 -1.9321 38 1 0.7406 3.2203 -4.0541 39 1 3.3473 3.3399 -5.7446 40 1 2.2535 4.6640 -5.2769 41 1 3.9807 4.7451 -4.8544 42 1 4.8814 3.4147 -3.0414 43 1 4.4271 2.2769 -0.9094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736833438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:20 Heat of formation + Delta-G solvation = -76.676114 kcal Electronic energy + Delta-G solvation = -26854.849493 eV Core-core repulsion = 23058.771753 eV Total energy + Delta-G solvation = -3796.077740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.67180 -39.22907 -38.24831 -35.86030 -34.94992 -34.30026 -32.01557 -31.83427 -30.94751 -29.70322 -27.79464 -26.92290 -24.97297 -23.31568 -22.50874 -21.70189 -21.14043 -20.05918 -17.94537 -17.20537 -16.94993 -16.53263 -15.68931 -15.55358 -15.23348 -15.02456 -14.65644 -14.48010 -14.11070 -13.90330 -13.74879 -13.44527 -13.37801 -12.99950 -12.62151 -12.46277 -12.29027 -12.03533 -11.90879 -11.64689 -11.53108 -11.43021 -11.38646 -10.96352 -10.93361 -10.54998 -10.50401 -10.42243 -10.41722 -10.12215 -9.63536 -9.07929 -8.89135 -8.78935 -8.31873 -8.13684 -7.90479 -6.48179 -3.93244 1.21742 1.48362 2.03384 3.17420 3.20646 3.24150 3.46204 3.78854 3.84309 4.11926 4.39504 4.69933 4.84992 4.85756 5.01164 5.07849 5.16673 5.28750 5.39563 5.45760 5.50032 5.67699 5.71410 5.79696 5.85629 5.96170 6.07791 6.10085 6.13776 6.17633 6.38067 6.43224 6.46652 6.61078 6.62893 6.67888 6.74408 6.91977 7.01510 7.07804 7.16725 7.45466 7.48450 7.98514 8.35322 9.00201 9.06006 9.26639 9.85542 10.57649 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.003870 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.736168 B = 7232.496402 C = 8206.137864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.077 4.077 3 C -0.041 4.041 4 C -0.170 4.170 5 C 0.483 3.517 6 O -0.568 6.568 7 N -0.423 5.423 8 C -0.292 4.292 9 H 0.109 0.891 10 C 0.025 3.975 11 N -0.888 5.888 12 Si 0.937 3.063 13 H -0.272 1.272 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.141 3.859 17 C 0.490 3.510 18 O -0.508 6.508 19 O -0.533 6.533 20 C -0.043 4.043 21 C -0.102 4.102 22 C -0.120 4.120 23 C -0.096 4.096 24 C -0.112 4.112 25 C -0.120 4.120 26 C -0.106 4.106 27 H 0.046 0.954 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.100 0.900 31 H 0.047 0.953 32 H 0.109 0.891 33 H 0.273 0.727 34 H 0.142 0.858 35 H 0.074 0.926 36 H 0.391 0.609 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.120 0.880 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.473 2.684 -14.337 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.114 4.114 3 C -0.044 4.044 4 C -0.191 4.191 5 C 0.275 3.725 6 O -0.454 6.454 7 N -0.141 5.141 8 C -0.420 4.420 9 H 0.127 0.873 10 C -0.176 4.176 11 N -0.529 5.529 12 Si 0.763 3.237 13 H -0.198 1.198 14 H -0.209 1.209 15 H -0.198 1.198 16 C 0.015 3.985 17 C 0.331 3.669 18 O -0.394 6.394 19 O -0.344 6.344 20 C -0.043 4.043 21 C -0.120 4.120 22 C -0.138 4.138 23 C -0.096 4.096 24 C -0.169 4.169 25 C -0.138 4.138 26 C -0.125 4.125 27 H 0.065 0.935 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.118 0.882 31 H 0.066 0.934 32 H 0.127 0.873 33 H 0.084 0.916 34 H 0.159 0.841 35 H 0.092 0.908 36 H 0.248 0.752 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.138 0.862 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.090 1.946 -14.121 15.136 hybrid contribution -0.609 0.683 0.880 1.270 sum 4.481 2.629 -13.241 14.223 Atomic orbital electron populations 1.21644 0.94796 1.00971 1.01617 1.20653 0.96779 0.91677 1.02249 1.20841 0.97198 0.95856 0.90515 1.22957 1.02561 1.00311 0.93311 1.17862 0.84240 0.87221 0.83146 1.90601 1.42549 1.25816 1.86450 1.43310 1.45424 1.19671 1.05656 1.19758 1.40971 0.97680 0.83564 0.87285 1.25332 0.96814 0.95073 1.00426 1.69681 1.48996 1.04668 1.29569 0.85817 0.79238 0.78529 0.80092 1.19757 1.20932 1.19769 1.20896 0.91169 0.81214 1.05258 1.23921 0.89036 0.83264 0.70728 1.90618 1.17818 1.85545 1.45417 1.84531 1.46445 1.17811 1.85602 1.19037 0.93356 0.97822 0.94083 1.21334 0.98965 0.98314 0.93339 1.20920 0.96093 0.99785 0.97038 1.19958 0.93492 0.99548 0.96642 1.20769 1.02159 0.99664 0.94266 1.20913 0.98600 1.00046 0.94264 1.21365 0.95910 0.98325 0.96853 0.93484 0.90516 0.94683 0.88167 0.93430 0.87303 0.91631 0.84080 0.90807 0.75241 0.85697 0.86200 0.91425 0.91737 0.91710 0.86161 0.85765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.37 37.16 0.35 -2.01 16 2 C -0.08 -1.36 5.30 -27.88 -0.15 -1.51 16 3 C -0.04 -0.74 4.73 -102.17 -0.48 -1.22 16 4 C -0.17 -3.43 8.62 -37.53 -0.32 -3.75 16 5 C 0.48 11.72 7.11 -13.05 -0.09 11.62 16 6 O -0.57 -14.78 10.95 5.14 0.06 -14.73 16 7 N -0.42 -10.62 2.19 -117.75 -0.26 -10.88 16 8 C -0.29 -7.88 9.38 -15.04 -0.14 -8.02 16 9 H 0.11 3.04 7.32 -52.49 -0.38 2.66 16 10 C 0.03 0.65 5.10 -17.44 -0.09 0.56 16 11 N -0.89 -22.88 9.05 55.51 0.50 -22.38 16 12 Si 0.94 20.34 29.57 -169.99 -5.03 15.32 16 13 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 14 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 15 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 16 C 0.14 3.10 4.83 -5.19 -0.03 3.08 16 17 C 0.49 11.02 6.10 36.01 0.22 11.24 16 18 O -0.51 -13.40 16.96 -18.75 -0.32 -13.72 16 19 O -0.53 -9.75 13.42 -39.24 -0.53 -10.28 16 20 C -0.04 -0.66 5.30 -105.05 -0.56 -1.22 16 21 C -0.10 -1.44 9.75 -39.10 -0.38 -1.83 16 22 C -0.12 -1.46 9.68 -39.65 -0.38 -1.84 16 23 C -0.10 -1.09 5.89 -104.49 -0.62 -1.71 16 24 C -0.11 -0.92 10.00 36.00 0.36 -0.56 16 25 C -0.12 -1.41 9.68 -39.65 -0.38 -1.80 16 26 C -0.11 -1.45 9.73 -39.10 -0.38 -1.83 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.08 1.64 6.36 -51.93 -0.33 1.31 16 29 H 0.03 0.54 6.53 -51.93 -0.34 0.20 16 30 H 0.10 2.02 6.01 -51.93 -0.31 1.71 16 31 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.11 2.05 6.22 -52.48 -0.33 1.72 16 33 H 0.27 6.75 8.31 -40.82 -0.34 6.42 16 34 H 0.14 3.23 6.02 -51.93 -0.31 2.92 16 35 H 0.07 1.36 6.63 -51.93 -0.34 1.01 16 36 H 0.39 5.53 9.10 45.56 0.41 5.94 16 37 H 0.13 1.74 6.48 -52.49 -0.34 1.40 16 38 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 41 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 42 H 0.12 1.12 8.06 -52.48 -0.42 0.70 16 43 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 357.75 15.07 5.39 5.39 Total: -1.00 -31.99 357.75 -8.04 -40.03 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -4.78 Total: 12.03 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -3.08 Total: -0.78 kcal Atomic # 7 Polarization: -33.50 SS G_CDS: 0.24 Total: -33.26 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.79 Total: -38.72 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.99 -8.04 -40.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736833438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.647 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds