Wall clock time and date at job start Tue Mar 31 2020 12:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47266 * 2 1 4 4 C 1.34971 * 120.00034 * 88.36055 * 3 2 1 5 5 C 1.46229 * 120.00233 * 351.19348 * 4 3 2 6 6 O 1.21756 * 120.00030 * 353.53511 * 5 4 3 7 7 N 1.34779 * 119.99907 * 173.52933 * 5 4 3 8 8 C 1.36714 * 119.99554 * 180.02562 * 7 5 4 9 9 H 1.07998 * 120.00618 * 17.42386 * 8 7 5 10 10 C 1.39130 * 119.99898 * 197.42883 * 8 7 5 11 11 N 1.31323 * 119.99665 * 12.64459 * 10 8 7 12 12 Si 1.86791 * 120.00219 * 192.64466 * 10 8 7 13 13 H 1.48506 * 109.47459 * 59.99685 * 12 10 8 14 14 H 1.48506 * 109.47355 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47471 * 299.99986 * 12 10 8 16 16 C 1.46501 * 120.00409 * 0.02562 * 7 5 4 17 17 C 1.50703 * 109.46955 * 82.60973 * 16 7 5 18 18 O 1.20826 * 119.99944 * 0.02562 * 17 16 7 19 19 O 1.34225 * 119.99603 * 180.02562 * 17 16 7 20 20 C 1.47145 * 119.99863 * 268.36415 * 3 2 1 21 21 C 1.39882 * 120.17403 * 64.72115 * 20 3 2 22 22 C 1.37872 * 119.82222 * 179.78778 * 21 20 3 23 23 C 1.38414 * 120.17588 * 0.49425 * 22 21 20 24 24 C 1.50698 * 119.82370 * 179.76155 * 23 22 21 25 25 C 1.38411 * 120.34729 * 359.73459 * 23 22 21 26 26 C 1.37873 * 120.18180 * 0.02799 * 25 23 22 27 27 H 1.08998 * 109.46901 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47155 * 300.00083 * 1 2 3 29 29 H 1.08992 * 109.47356 * 60.00151 * 1 2 3 30 30 H 1.09002 * 109.46885 * 120.00033 * 2 1 3 31 31 H 1.09003 * 109.46895 * 239.99476 * 2 1 3 32 32 H 1.08008 * 120.00024 * 171.19115 * 4 3 2 33 33 H 0.97006 * 119.99826 * 180.02562 * 11 10 8 34 34 H 1.08996 * 109.47263 * 202.61208 * 16 7 5 35 35 H 1.09005 * 109.46411 * 322.61303 * 16 7 5 36 36 H 0.96701 * 116.99838 * 180.02562 * 19 17 16 37 37 H 1.08001 * 120.08382 * 0.02562 * 21 20 3 38 38 H 1.08004 * 119.91308 * 180.22492 * 22 21 20 39 39 H 1.08997 * 109.47228 * 269.97078 * 24 23 22 40 40 H 1.09003 * 109.47463 * 29.97964 * 24 23 22 41 41 H 1.09002 * 109.46795 * 149.97703 * 24 23 22 42 42 H 1.08012 * 119.90861 * 180.02562 * 25 23 22 43 43 H 1.07995 * 120.09590 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2258 2.0682 1.1684 5 6 1.7698 1.4677 2.4213 6 8 1.1127 0.4429 2.4015 7 7 2.0768 2.0487 3.5980 8 6 1.6508 1.4870 4.7694 9 1 1.3227 0.4582 4.7870 10 6 1.6398 2.2407 5.9388 11 7 1.7962 3.5434 5.8817 12 14 1.4028 1.3999 7.5898 13 1 2.4952 0.4175 7.8064 14 1 1.4304 2.4167 8.6717 15 1 0.0949 0.6967 7.6040 16 6 2.8670 3.2821 3.6219 17 6 1.9622 4.4631 3.3814 18 8 0.7787 4.2920 3.2082 19 8 2.4712 5.7049 3.3595 20 6 2.3119 2.1023 -1.2738 21 6 1.2729 2.3682 -2.1718 22 6 1.5423 3.0110 -3.3613 23 6 2.8384 3.3840 -3.6726 24 6 3.1247 4.0814 -4.9774 25 6 3.8727 3.1201 -2.7915 26 6 3.6190 2.4824 -1.5957 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 2.7175 3.0298 1.1780 33 1 1.7889 4.0689 6.6971 34 1 3.3492 3.3859 4.5939 35 1 3.6270 3.2418 2.8416 36 1 1.8517 6.4305 3.2020 37 1 0.2617 2.0741 -1.9321 38 1 0.7406 3.2203 -4.0541 39 1 3.3473 3.3399 -5.7446 40 1 2.2535 4.6640 -5.2769 41 1 3.9807 4.7451 -4.8544 42 1 4.8814 3.4147 -3.0414 43 1 4.4271 2.2769 -0.9094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736833438.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:19 Heat of formation + Delta-G solvation = -94.647151 kcal Electronic energy + Delta-G solvation = -26855.628776 eV Core-core repulsion = 23058.771753 eV Total energy + Delta-G solvation = -3796.857023 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.34636 -40.50010 -39.86226 -37.46079 -36.60677 -35.98193 -33.80220 -33.04582 -31.96092 -31.13401 -29.56640 -28.09481 -26.62394 -24.83214 -23.49034 -23.04334 -22.71921 -21.51731 -19.44314 -19.04206 -18.71240 -18.25921 -17.33824 -16.90898 -16.53735 -16.27565 -16.15233 -15.98605 -15.77711 -15.35758 -15.11763 -14.77465 -14.47635 -14.31285 -13.99449 -13.80512 -13.64809 -13.49162 -13.31771 -13.17489 -12.97812 -12.75982 -12.67170 -12.45319 -12.41510 -12.20861 -12.15233 -11.96326 -11.79973 -11.70890 -11.42896 -10.96119 -10.20937 -10.14383 -9.86155 -9.81153 -9.27197 -8.41149 -5.94850 0.06212 0.51132 0.64163 1.41486 1.43595 1.52206 1.69715 2.15027 2.34056 2.59888 2.79428 3.03243 3.22004 3.68401 3.89516 3.98230 4.08398 4.11638 4.21087 4.32730 4.40012 4.51182 4.54328 4.63178 4.66875 4.81388 4.83969 4.89587 4.91526 4.94660 5.01784 5.17296 5.21522 5.28399 5.37633 5.38727 5.43219 5.53865 5.65788 5.69466 5.70703 5.90252 6.06857 6.10820 6.43460 7.11561 7.29181 7.43364 7.97796 8.62578 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.018017 B = 0.003870 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.736168 B = 7232.496402 C = 8206.137864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 C -0.004 4.004 4 C -0.202 4.202 5 C 0.476 3.524 6 O -0.599 6.599 7 N -0.440 5.440 8 C -0.329 4.329 9 H 0.084 0.916 10 C -0.006 4.006 11 N -0.901 5.901 12 Si 0.997 3.003 13 H -0.262 1.262 14 H -0.272 1.272 15 H -0.283 1.283 16 C 0.141 3.859 17 C 0.498 3.502 18 O -0.554 6.554 19 O -0.517 6.517 20 C -0.075 4.075 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.090 4.090 24 C -0.112 4.112 25 C -0.121 4.121 26 C -0.111 4.111 27 H 0.059 0.941 28 H 0.034 0.966 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.275 0.725 34 H 0.133 0.867 35 H 0.109 0.891 36 H 0.413 0.587 37 H 0.121 0.879 38 H 0.144 0.856 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.148 0.852 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.795 3.968 -16.810 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.116 4.116 3 C -0.007 4.007 4 C -0.223 4.223 5 C 0.270 3.730 6 O -0.487 6.487 7 N -0.158 5.158 8 C -0.457 4.457 9 H 0.102 0.898 10 C -0.206 4.206 11 N -0.541 5.541 12 Si 0.821 3.179 13 H -0.186 1.186 14 H -0.197 1.197 15 H -0.208 1.208 16 C 0.015 3.985 17 C 0.340 3.660 18 O -0.443 6.443 19 O -0.329 6.329 20 C -0.076 4.076 21 C -0.130 4.130 22 C -0.142 4.142 23 C -0.090 4.090 24 C -0.168 4.168 25 C -0.139 4.139 26 C -0.129 4.129 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.139 0.861 33 H 0.085 0.915 34 H 0.150 0.850 35 H 0.127 0.873 36 H 0.272 0.728 37 H 0.139 0.861 38 H 0.161 0.839 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.166 0.834 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.448 3.277 -16.606 18.113 hybrid contribution -1.005 0.324 1.409 1.761 sum 5.443 3.601 -15.197 16.539 Atomic orbital electron populations 1.21532 0.94644 1.01550 1.00583 1.20652 0.96870 0.91964 1.02141 1.21121 0.92950 0.95329 0.91265 1.22723 1.06084 1.01354 0.92131 1.18556 0.83493 0.86676 0.84291 1.90571 1.43801 1.27118 1.87199 1.43424 1.46190 1.20814 1.05371 1.19693 1.43354 0.97311 0.85356 0.89806 1.26041 0.96012 0.95671 1.02860 1.69768 1.48846 1.05233 1.30227 0.84932 0.78722 0.77882 0.76395 1.18626 1.19707 1.20846 1.20977 0.91340 0.80234 1.05955 1.23926 0.88223 0.84337 0.69466 1.90601 1.19645 1.86391 1.47697 1.84458 1.46529 1.17145 1.84756 1.18958 0.94925 1.00264 0.93413 1.21389 0.98467 0.99103 0.94077 1.21211 0.97425 0.99037 0.96506 1.20416 0.92929 0.98027 0.97623 1.20849 1.03228 1.00062 0.92658 1.21252 1.00202 0.99089 0.93371 1.21496 0.95163 0.98300 0.97910 0.92187 0.94707 0.92340 0.90995 0.90624 0.86105 0.91455 0.84999 0.87317 0.72799 0.86148 0.83855 0.90022 0.90713 0.90436 0.83412 0.85173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.55 9.37 71.98 0.67 -3.87 16 2 C -0.08 -2.86 5.30 29.85 0.16 -2.70 16 3 C 0.00 -0.14 4.73 -18.28 -0.09 -0.23 16 4 C -0.20 -8.34 8.62 23.60 0.20 -8.14 16 5 C 0.48 24.29 7.11 86.32 0.61 24.90 16 6 O -0.60 -33.23 10.95 -4.53 -0.05 -33.28 16 7 N -0.44 -23.08 2.19 -644.63 -1.41 -24.49 16 8 C -0.33 -18.68 9.38 84.15 0.79 -17.89 16 9 H 0.08 5.02 7.32 -2.91 -0.02 5.00 16 10 C -0.01 -0.29 5.10 84.98 0.43 0.14 16 11 N -0.90 -47.01 9.05 21.69 0.20 -46.81 16 12 Si 1.00 42.57 29.57 68.60 2.03 44.60 16 13 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 14 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 C 0.14 6.29 4.83 85.63 0.41 6.70 16 17 C 0.50 22.50 6.10 71.24 0.43 22.93 16 18 O -0.55 -29.87 16.96 21.96 0.37 -29.50 16 19 O -0.52 -18.24 13.42 -51.37 -0.69 -18.93 16 20 C -0.08 -2.24 5.30 -20.14 -0.11 -2.34 16 21 C -0.11 -3.01 9.75 22.58 0.22 -2.79 16 22 C -0.12 -2.63 9.68 22.22 0.22 -2.42 16 23 C -0.09 -1.70 5.89 -19.78 -0.12 -1.81 16 24 C -0.11 -1.32 10.00 71.24 0.71 -0.61 16 25 C -0.12 -2.43 9.68 22.22 0.22 -2.21 16 26 C -0.11 -2.77 9.73 22.58 0.22 -2.55 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.03 1.55 6.36 -2.39 -0.02 1.53 16 29 H 0.06 1.79 6.53 -2.39 -0.02 1.78 16 30 H 0.07 3.04 6.01 -2.39 -0.01 3.03 16 31 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 32 H 0.12 4.58 6.22 -2.91 -0.02 4.56 16 33 H 0.28 13.64 8.31 -92.70 -0.77 12.87 16 34 H 0.13 6.14 6.02 -2.39 -0.01 6.12 16 35 H 0.11 3.98 6.63 -2.38 -0.02 3.96 16 36 H 0.41 10.96 9.10 -74.06 -0.67 10.28 16 37 H 0.12 3.22 6.48 -2.91 -0.02 3.20 16 38 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 41 H 0.08 0.76 8.08 -2.39 -0.02 0.74 16 42 H 0.15 2.11 8.06 -2.90 -0.02 2.09 16 43 H 0.13 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -72.93 357.75 5.81 -67.12 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: 0.38 Total: 34.17 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 4.99 Total: 7.12 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -1.22 Total: -71.31 kcal Atomic # 8 Polarization: -81.34 SS G_CDS: -0.37 Total: -81.71 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -72.93 5.81 -67.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736833438.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.528 kcal (2) G-P(sol) polarization free energy of solvation -72.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds