Wall clock time and date at job start Tue Mar 31 2020 12:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.46902 * 2 1 4 4 C 1.34979 * 119.99797 * 95.00118 * 3 2 1 5 5 C 1.46227 * 119.99659 * 179.97438 * 4 3 2 6 6 O 1.21755 * 120.00510 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99569 * 180.02562 * 5 4 3 8 8 C 1.36718 * 119.99902 * 179.97438 * 7 5 4 9 9 H 1.08002 * 119.99729 * 14.91046 * 8 7 5 10 10 C 1.39119 * 120.00199 * 194.90451 * 8 7 5 11 11 N 1.31325 * 120.00174 * 23.41421 * 10 8 7 12 12 Si 1.86804 * 119.99914 * 203.41669 * 10 8 7 13 13 H 1.48505 * 109.47106 * 86.48001 * 12 10 8 14 14 H 1.48500 * 109.46842 * 206.47709 * 12 10 8 15 15 H 1.48496 * 109.47082 * 326.47902 * 12 10 8 16 16 C 1.46502 * 120.00254 * 359.97438 * 7 5 4 17 17 C 1.50694 * 109.47111 * 84.25882 * 16 7 5 18 18 O 1.20826 * 120.00076 * 359.97438 * 17 16 7 19 19 O 1.34237 * 120.00116 * 180.02562 * 17 16 7 20 20 C 1.47138 * 120.00177 * 274.99802 * 3 2 1 21 21 C 1.39875 * 120.17685 * 245.00499 * 20 3 2 22 22 C 1.37877 * 119.82775 * 179.97438 * 21 20 3 23 23 C 1.38417 * 120.17237 * 0.27253 * 22 21 20 24 24 C 1.50695 * 119.82402 * 179.72799 * 23 22 21 25 25 C 1.38412 * 120.34930 * 359.44638 * 23 22 21 26 26 C 1.37877 * 120.17561 * 0.55530 * 25 23 22 27 27 H 1.09001 * 109.47247 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47414 * 300.00263 * 1 2 3 29 29 H 1.09006 * 109.47036 * 59.99758 * 1 2 3 30 30 H 1.08996 * 109.46851 * 240.00021 * 2 1 3 31 31 H 1.08997 * 109.46953 * 120.00026 * 2 1 3 32 32 H 1.07997 * 120.00077 * 359.97438 * 4 3 2 33 33 H 0.96993 * 119.99896 * 180.02562 * 11 10 8 34 34 H 1.09001 * 109.46906 * 204.25616 * 16 7 5 35 35 H 1.08999 * 109.46875 * 324.25752 * 16 7 5 36 36 H 0.96699 * 116.99843 * 180.02562 * 19 17 16 37 37 H 1.08003 * 120.08817 * 359.95071 * 21 20 3 38 38 H 1.07996 * 119.91990 * 180.02562 * 22 21 20 39 39 H 1.09001 * 109.47329 * 89.99706 * 24 23 22 40 40 H 1.09004 * 109.47390 * 209.99514 * 24 23 22 41 41 H 1.08995 * 109.47297 * 329.99859 * 24 23 22 42 42 H 1.08003 * 119.91423 * 180.25947 * 25 23 22 43 43 H 1.07999 * 120.08930 * 179.74672 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3533 2.0231 1.1645 5 6 2.8412 3.4016 1.1644 6 8 2.9584 4.0060 0.1140 7 7 3.1622 4.0028 2.3272 8 6 3.6189 5.2915 2.3272 9 1 3.4990 5.9068 1.4477 10 6 4.2379 5.8102 3.4599 11 7 4.7962 5.0019 4.3315 12 14 4.2749 7.6565 3.7413 13 1 3.0335 8.0757 4.4403 14 1 5.4539 8.0068 4.5735 15 1 4.3667 8.3547 2.4340 16 6 3.0218 3.2755 3.5912 17 6 4.2541 2.4418 3.8305 18 8 5.1568 2.4535 3.0275 19 8 4.3485 1.6853 4.9354 20 6 2.1729 2.1515 -1.2694 21 6 3.4378 2.5465 -1.7169 22 6 3.5613 3.2304 -2.9078 23 6 2.4370 3.5312 -3.6571 24 6 2.5804 4.2843 -4.9544 25 6 1.1823 3.1387 -3.2239 26 6 1.0422 2.4542 -2.0353 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2498 1.4870 2.0963 33 1 5.2274 5.3635 5.1214 34 1 2.9001 3.9869 4.4081 35 1 2.1478 2.6262 3.5415 36 1 5.1581 1.1681 5.0455 37 1 4.3156 2.3168 -1.1311 38 1 4.5373 3.5357 -3.2549 39 1 2.7139 3.5766 -5.7726 40 1 1.6837 4.8785 -5.1307 41 1 3.4472 4.9427 -4.8985 42 1 0.3102 3.3735 -3.8162 43 1 0.0621 2.1523 -1.6967 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736833442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:25 Heat of formation + Delta-G solvation = -73.731138 kcal Electronic energy + Delta-G solvation = -27220.262966 eV Core-core repulsion = 23424.312929 eV Total energy + Delta-G solvation = -3795.950037 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.62293 -38.99000 -37.89478 -35.75195 -35.06367 -34.40851 -31.97990 -31.73505 -30.46949 -29.80878 -27.74627 -26.59000 -25.07350 -23.58121 -22.03365 -21.34143 -21.13984 -19.94075 -17.99747 -17.19934 -16.96870 -16.52788 -15.67159 -15.42415 -14.90143 -14.74113 -14.50986 -14.32194 -14.19793 -13.82520 -13.51719 -13.38094 -13.22187 -12.87673 -12.73381 -12.43398 -12.02648 -11.99268 -11.86373 -11.75570 -11.63446 -11.40702 -11.23802 -10.98870 -10.95937 -10.48115 -10.47388 -10.40537 -10.36682 -10.27184 -9.67992 -9.09280 -8.86199 -8.52715 -8.22188 -7.92487 -7.39794 -6.53193 -3.87089 1.58218 2.07000 2.24001 3.14815 3.21296 3.26641 3.44333 3.82587 4.11776 4.33874 4.41350 4.73892 5.00756 5.09106 5.20351 5.25899 5.31086 5.41438 5.46227 5.54910 5.70853 5.74244 5.78450 5.81357 5.92826 5.96664 6.00800 6.05710 6.09399 6.24643 6.31343 6.40705 6.46780 6.56736 6.64784 6.73025 6.89382 7.07612 7.14368 7.23730 7.44461 7.48982 7.61939 7.99850 8.35947 8.98945 9.08288 9.27948 9.89758 10.54911 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.005049 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.358080 B = 5544.275804 C = 7075.950585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.048 4.048 4 C -0.172 4.172 5 C 0.475 3.525 6 O -0.560 6.560 7 N -0.420 5.420 8 C -0.297 4.297 9 H 0.111 0.889 10 C 0.028 3.972 11 N -0.874 5.874 12 Si 0.928 3.072 13 H -0.276 1.276 14 H -0.285 1.285 15 H -0.269 1.269 16 C 0.142 3.858 17 C 0.488 3.512 18 O -0.501 6.501 19 O -0.535 6.535 20 C -0.024 4.024 21 C -0.036 4.036 22 C -0.126 4.126 23 C -0.094 4.094 24 C -0.108 4.108 25 C -0.133 4.133 26 C -0.111 4.111 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.113 0.887 33 H 0.272 0.728 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.392 0.608 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.111 0.889 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.830 -8.572 -5.372 12.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.119 4.119 3 C -0.051 4.051 4 C -0.193 4.193 5 C 0.267 3.733 6 O -0.445 6.445 7 N -0.138 5.138 8 C -0.424 4.424 9 H 0.128 0.872 10 C -0.176 4.176 11 N -0.513 5.513 12 Si 0.755 3.245 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.193 1.193 16 C 0.016 3.984 17 C 0.328 3.672 18 O -0.386 6.386 19 O -0.346 6.346 20 C -0.024 4.024 21 C -0.054 4.054 22 C -0.144 4.144 23 C -0.094 4.094 24 C -0.165 4.165 25 C -0.152 4.152 26 C -0.129 4.129 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.131 0.869 33 H 0.083 0.917 34 H 0.145 0.855 35 H 0.097 0.903 36 H 0.248 0.752 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.129 0.871 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.753 -7.950 -5.979 12.023 hybrid contribution 0.959 0.613 0.866 1.430 sum -5.794 -7.337 -5.113 10.656 Atomic orbital electron populations 1.21805 0.94807 1.01417 1.02462 1.20545 0.96113 0.92640 1.02609 1.20800 0.97260 0.94782 0.92256 1.23095 1.02388 0.96655 0.97161 1.17922 0.84853 0.86504 0.84007 1.90737 1.58683 1.65652 1.29380 1.43416 1.55502 1.11993 1.02933 1.19750 1.35372 0.85945 1.01365 0.87168 1.25276 0.94988 1.00598 0.96691 1.69807 1.32795 1.35664 1.13063 0.85890 0.77666 0.82254 0.78716 1.20152 1.21065 1.19308 1.20752 0.91014 0.95141 0.91517 1.23856 0.90179 0.75754 0.77419 1.90617 1.39882 1.61623 1.46490 1.84526 1.46225 1.57927 1.45929 1.18524 0.93383 0.97725 0.92756 1.20963 0.96396 0.94405 0.93633 1.20727 0.97581 1.00499 0.95609 1.19776 0.93425 0.99422 0.96825 1.20722 1.02147 0.99098 0.94551 1.20650 0.96243 1.01137 0.97130 1.21026 0.97210 0.99912 0.94710 0.92592 0.92404 0.92264 0.91045 0.91082 0.86899 0.91740 0.85458 0.90288 0.75164 0.87003 0.87043 0.91970 0.92131 0.91972 0.87138 0.86863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.84 37.16 0.37 -1.27 16 2 C -0.08 -1.07 6.08 -27.88 -0.17 -1.24 16 3 C -0.05 -0.83 4.76 -102.17 -0.49 -1.32 16 4 C -0.17 -3.38 8.75 -37.53 -0.33 -3.70 16 5 C 0.48 11.60 7.23 -13.05 -0.09 11.51 16 6 O -0.56 -15.01 11.81 5.14 0.06 -14.95 16 7 N -0.42 -10.56 2.17 -117.75 -0.26 -10.82 16 8 C -0.30 -8.10 9.35 -15.05 -0.14 -8.24 16 9 H 0.11 3.19 7.36 -52.49 -0.39 2.80 16 10 C 0.03 0.72 4.84 -17.44 -0.08 0.63 16 11 N -0.87 -22.68 9.36 55.50 0.52 -22.16 16 12 Si 0.93 20.38 29.61 -169.99 -5.03 15.34 16 13 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 16 C 0.14 3.08 4.84 -5.20 -0.03 3.06 16 17 C 0.49 10.73 6.29 36.00 0.23 10.96 16 18 O -0.50 -13.01 16.84 -18.75 -0.32 -13.32 16 19 O -0.53 -9.47 13.42 -39.28 -0.53 -10.00 16 20 C -0.02 -0.44 3.85 -105.06 -0.40 -0.85 16 21 C -0.04 -0.71 6.96 -39.10 -0.27 -0.98 16 22 C -0.13 -2.28 9.68 -39.65 -0.38 -2.66 16 23 C -0.09 -1.54 5.89 -104.49 -0.62 -2.15 16 24 C -0.11 -1.37 10.00 36.00 0.36 -1.01 16 25 C -0.13 -2.13 9.68 -39.65 -0.38 -2.51 16 26 C -0.11 -1.86 9.51 -39.10 -0.37 -2.23 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.66 6.03 -51.93 -0.31 0.35 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.85 8.03 -51.93 -0.42 0.44 16 32 H 0.11 1.95 6.22 -52.49 -0.33 1.63 16 33 H 0.27 6.74 8.31 -40.82 -0.34 6.41 16 34 H 0.13 2.85 6.31 -51.93 -0.33 2.53 16 35 H 0.08 1.40 6.43 -51.93 -0.33 1.07 16 36 H 0.39 5.32 9.10 45.56 0.41 5.73 16 37 H 0.11 2.38 8.05 -52.48 -0.42 1.95 16 38 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 41 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 42 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 43 H 0.11 1.66 6.22 -52.49 -0.33 1.34 16 LS Contribution 358.96 15.07 5.41 5.41 Total: -1.00 -33.20 358.96 -7.90 -41.10 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -4.95 Total: 11.42 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -2.81 Total: -2.01 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.26 Total: -32.98 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.78 Total: -38.28 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.20 -7.90 -41.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736833442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.633 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds