Wall clock time and date at job start Tue Mar 31 2020 12:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.46902 * 2 1 4 4 C 1.34979 * 119.99797 * 95.00118 * 3 2 1 5 5 C 1.46227 * 119.99659 * 179.97438 * 4 3 2 6 6 O 1.21755 * 120.00510 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99569 * 180.02562 * 5 4 3 8 8 C 1.36718 * 119.99902 * 179.97438 * 7 5 4 9 9 H 1.08002 * 119.99729 * 14.91046 * 8 7 5 10 10 C 1.39119 * 120.00199 * 194.90451 * 8 7 5 11 11 N 1.31325 * 120.00174 * 23.41421 * 10 8 7 12 12 Si 1.86804 * 119.99914 * 203.41669 * 10 8 7 13 13 H 1.48505 * 109.47106 * 86.48001 * 12 10 8 14 14 H 1.48500 * 109.46842 * 206.47709 * 12 10 8 15 15 H 1.48496 * 109.47082 * 326.47902 * 12 10 8 16 16 C 1.46502 * 120.00254 * 359.97438 * 7 5 4 17 17 C 1.50694 * 109.47111 * 84.25882 * 16 7 5 18 18 O 1.20826 * 120.00076 * 359.97438 * 17 16 7 19 19 O 1.34237 * 120.00116 * 180.02562 * 17 16 7 20 20 C 1.47138 * 120.00177 * 274.99802 * 3 2 1 21 21 C 1.39875 * 120.17685 * 245.00499 * 20 3 2 22 22 C 1.37877 * 119.82775 * 179.97438 * 21 20 3 23 23 C 1.38417 * 120.17237 * 0.27253 * 22 21 20 24 24 C 1.50695 * 119.82402 * 179.72799 * 23 22 21 25 25 C 1.38412 * 120.34930 * 359.44638 * 23 22 21 26 26 C 1.37877 * 120.17561 * 0.55530 * 25 23 22 27 27 H 1.09001 * 109.47247 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47414 * 300.00263 * 1 2 3 29 29 H 1.09006 * 109.47036 * 59.99758 * 1 2 3 30 30 H 1.08996 * 109.46851 * 240.00021 * 2 1 3 31 31 H 1.08997 * 109.46953 * 120.00026 * 2 1 3 32 32 H 1.07997 * 120.00077 * 359.97438 * 4 3 2 33 33 H 0.96993 * 119.99896 * 180.02562 * 11 10 8 34 34 H 1.09001 * 109.46906 * 204.25616 * 16 7 5 35 35 H 1.08999 * 109.46875 * 324.25752 * 16 7 5 36 36 H 0.96699 * 116.99843 * 180.02562 * 19 17 16 37 37 H 1.08003 * 120.08817 * 359.95071 * 21 20 3 38 38 H 1.07996 * 119.91990 * 180.02562 * 22 21 20 39 39 H 1.09001 * 109.47329 * 89.99706 * 24 23 22 40 40 H 1.09004 * 109.47390 * 209.99514 * 24 23 22 41 41 H 1.08995 * 109.47297 * 329.99859 * 24 23 22 42 42 H 1.08003 * 119.91423 * 180.25947 * 25 23 22 43 43 H 1.07999 * 120.08930 * 179.74672 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3533 2.0231 1.1645 5 6 2.8412 3.4016 1.1644 6 8 2.9584 4.0060 0.1140 7 7 3.1622 4.0028 2.3272 8 6 3.6189 5.2915 2.3272 9 1 3.4990 5.9068 1.4477 10 6 4.2379 5.8102 3.4599 11 7 4.7962 5.0019 4.3315 12 14 4.2749 7.6565 3.7413 13 1 3.0335 8.0757 4.4403 14 1 5.4539 8.0068 4.5735 15 1 4.3667 8.3547 2.4340 16 6 3.0218 3.2755 3.5912 17 6 4.2541 2.4418 3.8305 18 8 5.1568 2.4535 3.0275 19 8 4.3485 1.6853 4.9354 20 6 2.1729 2.1515 -1.2694 21 6 3.4378 2.5465 -1.7169 22 6 3.5613 3.2304 -2.9078 23 6 2.4370 3.5312 -3.6571 24 6 2.5804 4.2843 -4.9544 25 6 1.1823 3.1387 -3.2239 26 6 1.0422 2.4542 -2.0353 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.2498 1.4870 2.0963 33 1 5.2274 5.3635 5.1214 34 1 2.9001 3.9869 4.4081 35 1 2.1478 2.6262 3.5415 36 1 5.1581 1.1681 5.0455 37 1 4.3156 2.3168 -1.1311 38 1 4.5373 3.5357 -3.2549 39 1 2.7139 3.5766 -5.7726 40 1 1.6837 4.8785 -5.1307 41 1 3.4472 4.9427 -4.8985 42 1 0.3102 3.3735 -3.8162 43 1 0.0621 2.1523 -1.6967 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736833442.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:24 Heat of formation + Delta-G solvation = -93.213148 kcal Electronic energy + Delta-G solvation = -27221.107769 eV Core-core repulsion = 23424.312929 eV Total energy + Delta-G solvation = -3796.794840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.31824 -40.50527 -39.52846 -37.24169 -36.63859 -36.18343 -33.81048 -33.00381 -31.82297 -31.13980 -29.50860 -27.97075 -26.70058 -24.90534 -23.41179 -22.87378 -22.54437 -21.52791 -19.46689 -19.01642 -18.71541 -18.24173 -17.37776 -16.99603 -16.39589 -16.21200 -16.14033 -15.94981 -15.55233 -15.16803 -14.99533 -14.78314 -14.49406 -14.27849 -14.17323 -13.72989 -13.60212 -13.48140 -13.42937 -13.18069 -12.95725 -12.73055 -12.60932 -12.48413 -12.31301 -12.20017 -12.14098 -12.03380 -11.79219 -11.52198 -11.47248 -10.96255 -10.47852 -10.06875 -9.88357 -9.57981 -8.87590 -8.46773 -5.89945 0.14614 0.67562 0.84113 1.39290 1.40482 1.51688 1.72031 2.16106 2.35028 2.60271 2.96302 3.03383 3.25101 3.73291 3.87396 4.03532 4.13415 4.17086 4.21154 4.36524 4.39698 4.49666 4.58985 4.63044 4.70423 4.76878 4.86566 4.88976 4.90967 4.99122 5.05362 5.11770 5.23480 5.28938 5.40679 5.43257 5.44071 5.52321 5.70866 5.79742 5.82686 5.93362 6.07037 6.28121 6.44021 7.13769 7.31543 7.46115 8.03198 8.59511 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012164 B = 0.005049 C = 0.003956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.358080 B = 5544.275804 C = 7075.950585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 C -0.016 4.016 4 C -0.206 4.206 5 C 0.469 3.531 6 O -0.597 6.597 7 N -0.438 5.438 8 C -0.334 4.334 9 H 0.077 0.923 10 C -0.001 4.001 11 N -0.888 5.888 12 Si 0.989 3.011 13 H -0.259 1.259 14 H -0.279 1.279 15 H -0.281 1.281 16 C 0.141 3.859 17 C 0.497 3.503 18 O -0.549 6.549 19 O -0.518 6.518 20 C -0.050 4.050 21 C -0.063 4.063 22 C -0.145 4.145 23 C -0.098 4.098 24 C -0.106 4.106 25 C -0.135 4.135 26 C -0.113 4.113 27 H 0.083 0.917 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.275 0.725 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.413 0.587 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.146 0.854 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.010 -9.744 -5.675 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.018 4.018 4 C -0.227 4.227 5 C 0.262 3.738 6 O -0.484 6.484 7 N -0.156 5.156 8 C -0.462 4.462 9 H 0.095 0.905 10 C -0.203 4.203 11 N -0.527 5.527 12 Si 0.813 3.187 13 H -0.184 1.184 14 H -0.204 1.204 15 H -0.206 1.206 16 C 0.016 3.984 17 C 0.339 3.661 18 O -0.438 6.438 19 O -0.330 6.330 20 C -0.050 4.050 21 C -0.081 4.081 22 C -0.163 4.163 23 C -0.098 4.098 24 C -0.162 4.162 25 C -0.153 4.153 26 C -0.131 4.131 27 H 0.102 0.898 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.154 0.846 33 H 0.085 0.915 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.273 0.727 37 H 0.098 0.902 38 H 0.134 0.866 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.163 0.837 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.943 -9.165 -6.236 14.243 hybrid contribution 1.631 0.863 0.818 2.018 sum -7.312 -8.302 -5.417 12.318 Atomic orbital electron populations 1.21787 0.92620 1.03260 1.02397 1.20699 0.97779 0.89453 1.03919 1.21376 0.93094 0.96395 0.90978 1.22945 1.05905 0.94680 0.99151 1.18742 0.83637 0.88037 0.83384 1.90699 1.59923 1.67109 1.30643 1.43510 1.56001 1.11830 1.04308 1.19548 1.37906 0.87451 1.01255 0.90507 1.25947 0.94008 1.04348 0.95968 1.69878 1.32738 1.36922 1.13197 0.85005 0.78347 0.77357 0.77962 1.18374 1.20389 1.20579 1.20873 0.92437 0.95303 0.89829 1.23855 0.89498 0.75378 0.77399 1.90605 1.41444 1.63431 1.48283 1.84453 1.47515 1.57345 1.43690 1.18798 0.93563 0.98850 0.93817 1.20867 0.96155 0.96471 0.94637 1.20940 0.98923 1.00789 0.95667 1.20230 0.92911 0.98731 0.97883 1.20778 1.02977 0.99370 0.93110 1.21117 0.97261 0.99917 0.97000 1.21359 0.97495 0.99457 0.94765 0.89824 0.92511 0.92311 0.89988 0.89555 0.84556 0.91482 0.86369 0.86343 0.72734 0.90248 0.86632 0.89686 0.90445 0.92078 0.83677 0.84433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.84 71.98 0.71 -1.97 16 2 C -0.08 -1.92 6.08 29.85 0.18 -1.74 16 3 C -0.02 -0.53 4.76 -18.28 -0.09 -0.62 16 4 C -0.21 -8.14 8.75 23.60 0.21 -7.94 16 5 C 0.47 23.86 7.23 86.32 0.62 24.48 16 6 O -0.60 -33.90 11.81 -4.52 -0.05 -33.96 16 7 N -0.44 -22.88 2.17 -644.65 -1.40 -24.27 16 8 C -0.33 -19.15 9.35 84.14 0.79 -18.37 16 9 H 0.08 4.79 7.36 -2.91 -0.02 4.76 16 10 C 0.00 -0.04 4.84 84.98 0.41 0.37 16 11 N -0.89 -46.77 9.36 21.69 0.20 -46.57 16 12 Si 0.99 42.71 29.61 68.60 2.03 44.74 16 13 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 14 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 C 0.14 6.15 4.84 85.63 0.41 6.57 16 17 C 0.50 21.85 6.29 71.23 0.45 22.30 16 18 O -0.55 -29.22 16.84 21.96 0.37 -28.85 16 19 O -0.52 -17.56 13.42 -51.48 -0.69 -18.25 16 20 C -0.05 -1.89 3.85 -20.15 -0.08 -1.97 16 21 C -0.06 -2.64 6.96 22.58 0.16 -2.48 16 22 C -0.15 -5.43 9.68 22.23 0.22 -5.22 16 23 C -0.10 -3.08 5.89 -19.78 -0.12 -3.20 16 24 C -0.11 -2.44 10.00 71.23 0.71 -1.73 16 25 C -0.14 -4.03 9.68 22.23 0.22 -3.82 16 26 C -0.11 -3.64 9.51 22.58 0.21 -3.43 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.06 1.10 6.03 -2.38 -0.01 1.09 16 30 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 31 H 0.09 1.81 8.03 -2.39 -0.02 1.80 16 32 H 0.14 4.58 6.22 -2.91 -0.02 4.56 16 33 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 34 H 0.12 5.34 6.31 -2.39 -0.02 5.33 16 35 H 0.12 4.08 6.43 -2.39 -0.02 4.06 16 36 H 0.41 10.49 9.10 -74.06 -0.67 9.81 16 37 H 0.08 3.72 8.05 -2.91 -0.02 3.70 16 38 H 0.12 4.02 8.06 -2.91 -0.02 4.00 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.54 8.08 -2.38 -0.02 1.52 16 41 H 0.06 1.42 8.08 -2.39 -0.02 1.40 16 42 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 43 H 0.14 3.67 6.22 -2.91 -0.02 3.65 16 Total: -1.00 -76.84 358.96 5.85 -71.00 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.37 Total: 34.90 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 5.01 Total: 1.25 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -1.19 Total: -70.84 kcal Atomic # 8 Polarization: -80.67 SS G_CDS: -0.37 Total: -81.05 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -76.84 5.85 -71.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736833442.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.216 kcal (2) G-P(sol) polarization free energy of solvation -76.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds