Wall clock time and date at job start Tue Mar 31 2020 11:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47181 * 2 1 4 4 C 1.50697 * 109.47100 * 120.00101 * 2 1 3 5 5 C 1.38282 * 119.93194 * 120.00174 * 4 2 1 6 6 C 1.38113 * 120.07175 * 180.02562 * 5 4 2 7 7 C 1.38875 * 119.93064 * 359.97438 * 6 5 4 8 8 N 1.39926 * 120.07292 * 180.02562 * 7 6 5 9 9 C 1.46763 * 124.34701 * 354.29948 * 8 7 6 10 10 C 1.54476 * 105.47383 * 162.96389 * 9 8 7 11 11 C 1.54625 * 101.76441 * 25.41069 * 10 9 8 12 12 H 1.09005 * 110.59802 * 93.94133 * 11 10 9 13 13 C 1.50705 * 110.48712 * 216.52645 * 11 10 9 14 14 O 1.21210 * 119.99922 * 356.22771 * 13 11 10 15 15 O 1.34311 * 119.99864 * 176.23149 * 13 11 10 16 16 C 1.34925 * 116.99852 * 179.97438 * 15 13 11 17 17 H 1.07996 * 119.99968 * 0.02562 * 16 15 13 18 18 C 1.38750 * 119.99771 * 179.97438 * 16 15 13 19 19 N 1.31446 * 120.00490 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00051 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46821 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47250 * 239.99841 * 20 18 16 23 23 H 1.48496 * 109.47341 * 119.99748 * 20 18 16 24 24 C 1.34418 * 124.35111 * 174.27261 * 8 7 6 25 25 O 1.21281 * 124.93772 * 0.39380 * 24 8 7 26 26 C 1.38874 * 119.85472 * 0.27698 * 7 6 5 27 27 C 1.38107 * 119.93161 * 359.42418 * 26 7 6 28 28 H 1.09000 * 109.46802 * 300.00288 * 1 2 3 29 29 H 1.08995 * 109.46823 * 59.99970 * 1 2 3 30 30 H 1.08998 * 109.47286 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47079 * 240.00052 * 2 1 3 32 32 H 1.08995 * 109.47267 * 299.99758 * 3 2 1 33 33 H 1.09000 * 109.47488 * 60.00132 * 3 2 1 34 34 H 1.09002 * 109.47108 * 179.97438 * 3 2 1 35 35 H 1.07996 * 119.96320 * 359.97106 * 5 4 2 36 36 H 1.07995 * 120.03296 * 180.02562 * 6 5 4 37 37 H 1.09003 * 110.24561 * 281.96312 * 9 8 7 38 38 H 1.09000 * 110.24792 * 43.96075 * 9 8 7 39 39 H 1.09001 * 110.96719 * 267.29526 * 10 9 8 40 40 H 1.08999 * 110.97578 * 143.53447 * 10 9 8 41 41 H 0.97006 * 119.99570 * 0.02562 * 19 18 16 42 42 H 1.08009 * 120.03148 * 179.72862 * 26 7 6 43 43 H 1.08001 * 119.97038 * 180.30013 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8273 -1.8346 1.1019 6 6 3.2888 -2.4882 2.2276 7 6 2.9542 -2.0151 3.4897 8 7 3.4206 -2.6747 4.6322 9 6 4.1667 -3.9383 4.6122 10 6 4.8311 -4.0466 6.0025 11 6 3.8853 -3.1861 6.8719 12 1 3.1286 -3.8098 7.3480 13 6 4.6693 -2.4252 7.9099 14 8 5.8649 -2.5966 8.0124 15 8 4.0433 -1.5573 8.7215 16 6 4.8034 -0.9095 9.6288 17 1 5.8654 -1.0995 9.6777 18 6 4.2207 0.0014 10.4982 19 7 2.9284 0.2338 10.4376 20 14 5.2732 0.8988 11.7538 21 1 6.6864 0.4639 11.6164 22 1 4.7885 0.5838 13.1216 23 1 5.1814 2.3626 11.5210 24 6 3.2432 -2.2321 5.8890 25 8 2.6547 -1.2155 6.1908 26 6 2.1513 -0.8889 3.6153 27 6 1.6981 -0.2362 2.4857 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 3.0868 -2.2023 0.1202 36 1 3.9099 -3.3659 2.1265 37 1 3.4869 -4.7753 4.4528 38 1 4.9271 -3.9151 3.8315 39 1 5.8371 -3.6270 5.9879 40 1 4.8463 -5.0802 6.3483 41 1 2.3819 -0.2319 9.7854 42 1 1.8857 -0.5210 4.5955 43 1 1.0777 0.6425 2.5827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745118606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:08 Heat of formation + Delta-G solvation = -93.960664 kcal Electronic energy + Delta-G solvation = -26263.944462 eV Core-core repulsion = 22467.117207 eV Total energy + Delta-G solvation = -3796.827255 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.20438 -39.44064 -38.62491 -36.64574 -35.75583 -35.05487 -32.47624 -32.04767 -30.97442 -28.63214 -28.15119 -27.32882 -24.94029 -23.78198 -23.33899 -21.91309 -21.02019 -19.91292 -19.50199 -17.98770 -17.61300 -17.15552 -16.53519 -16.02726 -15.33877 -15.18605 -14.81225 -14.50668 -14.34849 -13.97398 -13.80231 -13.79634 -13.67865 -13.43847 -13.19758 -13.06229 -13.04502 -12.57141 -12.40442 -12.22179 -11.84191 -11.54104 -11.39948 -11.15516 -11.09406 -10.96904 -10.83041 -10.79522 -10.44373 -10.23957 -10.06556 -9.73949 -9.48679 -9.14278 -8.95914 -8.49847 -7.81725 -6.72304 -4.08760 1.23611 1.39468 2.53821 2.76608 3.20240 3.30671 3.48317 3.51187 3.79510 3.91195 4.27493 4.33567 4.50552 4.53029 4.65442 4.87370 4.92545 4.97108 5.00294 5.01780 5.21108 5.25275 5.25341 5.36211 5.42162 5.42722 5.47881 5.62426 5.64207 5.68529 5.78344 5.79898 5.96874 6.03556 6.05363 6.09581 6.23460 6.35881 6.50555 6.56250 6.63649 7.04286 7.10941 7.61565 8.14790 8.42441 8.47085 9.06183 9.73327 10.72721 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.003223 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.613882 B = 8685.847628 C = 9880.803831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.051 4.051 3 C -0.146 4.146 4 C -0.110 4.110 5 C -0.091 4.091 6 C -0.160 4.160 7 C 0.171 3.829 8 N -0.564 5.564 9 C 0.098 3.902 10 C -0.115 4.115 11 C -0.107 4.107 12 H 0.135 0.865 13 C 0.406 3.594 14 O -0.547 6.547 15 O -0.213 6.213 16 C -0.464 4.464 17 H 0.089 0.911 18 C 0.014 3.986 19 N -0.874 5.874 20 Si 1.104 2.896 21 H -0.282 1.282 22 H -0.279 1.279 23 H -0.279 1.279 24 C 0.525 3.475 25 O -0.472 6.472 26 C -0.155 4.155 27 C -0.083 4.083 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.285 0.715 42 H 0.156 0.844 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.709 -6.587 -20.819 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.203 4.203 4 C -0.111 4.111 5 C -0.110 4.110 6 C -0.181 4.181 7 C 0.077 3.923 8 N -0.288 5.288 9 C -0.024 4.024 10 C -0.153 4.153 11 C -0.130 4.130 12 H 0.153 0.847 13 C 0.252 3.748 14 O -0.444 6.444 15 O -0.120 6.120 16 C -0.540 4.540 17 H 0.107 0.893 18 C -0.192 4.192 19 N -0.507 5.507 20 Si 0.928 3.072 21 H -0.207 1.207 22 H -0.205 1.205 23 H -0.205 1.205 24 C 0.313 3.687 25 O -0.343 6.343 26 C -0.175 4.175 27 C -0.102 4.102 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.122 0.878 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.173 0.827 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.817 -4.918 -19.317 20.131 hybrid contribution 0.120 -1.367 -1.310 1.897 sum -2.697 -6.285 -20.627 21.731 Atomic orbital electron populations 1.21867 0.94538 1.01925 1.01856 1.20046 0.95781 0.95928 0.95222 1.21873 1.01291 0.95252 1.01864 1.19792 0.99958 0.96735 0.94628 1.20750 0.97428 0.95111 0.97702 1.20702 1.04267 1.02475 0.90624 1.17809 0.95693 0.93385 0.85382 1.45816 1.54066 1.23786 1.05160 1.22307 0.95746 0.84925 0.99447 1.22620 1.00192 1.01241 0.91235 1.21565 0.99737 0.97192 0.94476 0.84748 1.21880 0.86591 0.82392 0.83937 1.90555 1.15791 1.66595 1.71509 1.83650 1.41389 1.46257 1.40670 1.22231 0.94049 1.24250 1.13427 0.89350 1.26647 0.98283 0.95272 0.99032 1.70449 1.05130 1.40095 1.35032 0.82989 0.73780 0.75948 0.74488 1.20748 1.20468 1.20484 1.20602 0.79602 0.85867 0.82644 1.90711 1.39639 1.23623 1.80345 1.21711 0.98681 0.95496 1.01599 1.20859 0.98954 0.99168 0.91203 0.92365 0.92593 0.92604 0.90757 0.92578 0.92340 0.92539 0.85970 0.85791 0.89993 0.89409 0.87777 0.88154 0.90422 0.82657 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.01 37.16 0.33 -0.82 16 2 C -0.05 -0.45 3.09 -91.78 -0.28 -0.73 16 3 C -0.15 -1.23 9.00 37.16 0.33 -0.89 16 4 C -0.11 -1.23 4.78 -104.59 -0.50 -1.73 16 5 C -0.09 -0.97 9.66 -39.61 -0.38 -1.35 16 6 C -0.16 -1.87 9.42 -39.39 -0.37 -2.24 16 7 C 0.17 2.54 6.60 -83.69 -0.55 1.99 16 8 N -0.56 -8.61 3.14 -112.27 -0.35 -8.96 16 9 C 0.10 1.06 6.51 -3.12 -0.02 1.04 16 10 C -0.12 -1.52 6.45 -25.10 -0.16 -1.68 16 11 C -0.11 -1.95 3.44 -91.78 -0.32 -2.26 16 12 H 0.13 2.10 8.14 -51.93 -0.42 1.68 16 13 C 0.41 10.19 7.21 36.01 0.26 10.45 16 14 O -0.55 -14.61 14.76 -19.05 -0.28 -14.89 16 15 O -0.21 -6.30 8.72 -22.93 -0.20 -6.50 16 16 C -0.46 -14.24 9.65 30.92 0.30 -13.94 16 17 H 0.09 2.75 6.86 -52.49 -0.36 2.39 16 18 C 0.01 0.42 5.49 -17.53 -0.10 0.32 16 19 N -0.87 -27.09 13.69 55.48 0.76 -26.33 16 20 Si 1.10 25.33 29.92 -169.99 -5.09 20.24 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 24 C 0.53 10.16 7.34 -10.86 -0.08 10.08 16 25 O -0.47 -11.05 14.29 3.86 0.06 -11.00 16 26 C -0.15 -2.46 9.29 -39.39 -0.37 -2.83 16 27 C -0.08 -1.09 8.70 -39.61 -0.34 -1.43 16 28 H 0.06 0.49 7.38 -51.93 -0.38 0.11 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.56 7.87 -51.93 -0.41 0.16 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.52 7.38 -51.93 -0.38 0.14 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.12 0.98 7.94 -52.49 -0.42 0.56 16 36 H 0.12 1.14 6.75 -52.49 -0.35 0.79 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.77 7.24 -51.93 -0.38 0.40 16 39 H 0.10 1.58 7.06 -51.93 -0.37 1.21 16 40 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.29 9.09 7.97 -40.82 -0.33 8.77 16 42 H 0.16 2.91 5.26 -52.48 -0.28 2.63 16 43 H 0.12 1.44 7.09 -52.49 -0.37 1.07 16 LS Contribution 357.25 15.07 5.38 5.38 Total: -1.00 -36.80 357.25 -7.74 -44.54 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -5.78 Total: 3.53 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -2.25 Total: -6.02 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.41 Total: -35.29 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -0.43 Total: -32.39 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.09 Total: 20.24 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.80 -7.74 -44.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745118606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.421 kcal (2) G-P(sol) polarization free energy of solvation -36.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds