Wall clock time and date at job start Tue Mar 31 2020 11:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47181 * 2 1 4 4 C 1.50697 * 109.47100 * 120.00101 * 2 1 3 5 5 C 1.38282 * 119.93194 * 120.00174 * 4 2 1 6 6 C 1.38113 * 120.07175 * 180.02562 * 5 4 2 7 7 C 1.38875 * 119.93064 * 359.97438 * 6 5 4 8 8 N 1.39926 * 120.07292 * 180.02562 * 7 6 5 9 9 C 1.46763 * 124.34701 * 354.29948 * 8 7 6 10 10 C 1.54476 * 105.47383 * 162.96389 * 9 8 7 11 11 C 1.54625 * 101.76441 * 25.41069 * 10 9 8 12 12 H 1.09005 * 110.59802 * 93.94133 * 11 10 9 13 13 C 1.50705 * 110.48712 * 216.52645 * 11 10 9 14 14 O 1.21210 * 119.99922 * 356.22771 * 13 11 10 15 15 O 1.34311 * 119.99864 * 176.23149 * 13 11 10 16 16 C 1.34925 * 116.99852 * 179.97438 * 15 13 11 17 17 H 1.07996 * 119.99968 * 0.02562 * 16 15 13 18 18 C 1.38750 * 119.99771 * 179.97438 * 16 15 13 19 19 N 1.31446 * 120.00490 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00051 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46821 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47250 * 239.99841 * 20 18 16 23 23 H 1.48496 * 109.47341 * 119.99748 * 20 18 16 24 24 C 1.34418 * 124.35111 * 174.27261 * 8 7 6 25 25 O 1.21281 * 124.93772 * 0.39380 * 24 8 7 26 26 C 1.38874 * 119.85472 * 0.27698 * 7 6 5 27 27 C 1.38107 * 119.93161 * 359.42418 * 26 7 6 28 28 H 1.09000 * 109.46802 * 300.00288 * 1 2 3 29 29 H 1.08995 * 109.46823 * 59.99970 * 1 2 3 30 30 H 1.08998 * 109.47286 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47079 * 240.00052 * 2 1 3 32 32 H 1.08995 * 109.47267 * 299.99758 * 3 2 1 33 33 H 1.09000 * 109.47488 * 60.00132 * 3 2 1 34 34 H 1.09002 * 109.47108 * 179.97438 * 3 2 1 35 35 H 1.07996 * 119.96320 * 359.97106 * 5 4 2 36 36 H 1.07995 * 120.03296 * 180.02562 * 6 5 4 37 37 H 1.09003 * 110.24561 * 281.96312 * 9 8 7 38 38 H 1.09000 * 110.24792 * 43.96075 * 9 8 7 39 39 H 1.09001 * 110.96719 * 267.29526 * 10 9 8 40 40 H 1.08999 * 110.97578 * 143.53447 * 10 9 8 41 41 H 0.97006 * 119.99570 * 0.02562 * 19 18 16 42 42 H 1.08009 * 120.03148 * 179.72862 * 26 7 6 43 43 H 1.08001 * 119.97038 * 180.30013 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.8273 -1.8346 1.1019 6 6 3.2888 -2.4882 2.2276 7 6 2.9542 -2.0151 3.4897 8 7 3.4206 -2.6747 4.6322 9 6 4.1667 -3.9383 4.6122 10 6 4.8311 -4.0466 6.0025 11 6 3.8853 -3.1861 6.8719 12 1 3.1286 -3.8098 7.3480 13 6 4.6693 -2.4252 7.9099 14 8 5.8649 -2.5966 8.0124 15 8 4.0433 -1.5573 8.7215 16 6 4.8034 -0.9095 9.6288 17 1 5.8654 -1.0995 9.6777 18 6 4.2207 0.0014 10.4982 19 7 2.9284 0.2338 10.4376 20 14 5.2732 0.8988 11.7538 21 1 6.6864 0.4639 11.6164 22 1 4.7885 0.5838 13.1216 23 1 5.1814 2.3626 11.5210 24 6 3.2432 -2.2321 5.8890 25 8 2.6547 -1.2155 6.1908 26 6 2.1513 -0.8889 3.6153 27 6 1.6981 -0.2362 2.4857 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 0.0005 35 1 3.0868 -2.2023 0.1202 36 1 3.9099 -3.3659 2.1265 37 1 3.4869 -4.7753 4.4528 38 1 4.9271 -3.9151 3.8315 39 1 5.8371 -3.6270 5.9879 40 1 4.8463 -5.0802 6.3483 41 1 2.3819 -0.2319 9.7854 42 1 1.8857 -0.5210 4.5955 43 1 1.0777 0.6425 2.5827 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745118606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:07 Heat of formation + Delta-G solvation = -116.905133 kcal Electronic energy + Delta-G solvation = -26264.939408 eV Core-core repulsion = 22467.117207 eV Total energy + Delta-G solvation = -3797.822202 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.54678 -41.06803 -40.04235 -38.13301 -37.48824 -36.27317 -34.36836 -33.59091 -31.97444 -29.79309 -29.32316 -27.97303 -27.05618 -24.77438 -24.70806 -23.19946 -22.22018 -21.20535 -20.74088 -20.15236 -18.88508 -18.73144 -18.04272 -17.36884 -17.10452 -16.52631 -16.12983 -15.86711 -15.62742 -15.47504 -15.16395 -14.96285 -14.81587 -14.60919 -14.39452 -14.25534 -14.11069 -13.49552 -13.46068 -13.17716 -13.10489 -13.05138 -12.86833 -12.47148 -12.37600 -12.30961 -12.03603 -11.98725 -11.93197 -11.73323 -11.58000 -11.30482 -11.05803 -10.81395 -10.72629 -9.94786 -9.10119 -8.88502 -6.49591 0.15524 0.40297 0.99791 1.34163 1.43429 1.58719 1.72475 1.75261 2.14368 2.53743 2.79769 2.90433 3.02742 3.25131 3.68779 3.77033 3.84212 3.89439 4.02669 4.13808 4.25510 4.34238 4.40216 4.43890 4.46296 4.53009 4.54318 4.71321 4.80696 4.84212 4.95411 5.00383 5.01164 5.04531 5.10506 5.17952 5.22262 5.34472 5.39087 5.42826 5.51348 5.71974 5.89262 6.06026 6.07015 6.26213 6.78054 6.80520 7.51322 8.35216 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016441 B = 0.003223 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.613882 B = 8685.847628 C = 9880.803831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.049 4.049 3 C -0.146 4.146 4 C -0.103 4.103 5 C -0.086 4.086 6 C -0.145 4.145 7 C 0.141 3.859 8 N -0.555 5.555 9 C 0.098 3.902 10 C -0.104 4.104 11 C -0.107 4.107 12 H 0.161 0.839 13 C 0.408 3.592 14 O -0.564 6.564 15 O -0.250 6.250 16 C -0.495 4.495 17 H 0.076 0.924 18 C -0.030 4.030 19 N -0.896 5.896 20 Si 1.151 2.849 21 H -0.268 1.268 22 H -0.257 1.257 23 H -0.265 1.265 24 C 0.512 3.488 25 O -0.533 6.533 26 C -0.188 4.188 27 C -0.094 4.094 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.163 0.837 36 H 0.161 0.839 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.082 0.918 40 H 0.142 0.858 41 H 0.265 0.735 42 H 0.114 0.886 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.607 -8.762 -24.148 25.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.067 4.067 3 C -0.204 4.204 4 C -0.104 4.104 5 C -0.104 4.104 6 C -0.165 4.165 7 C 0.048 3.952 8 N -0.278 5.278 9 C -0.022 4.022 10 C -0.142 4.142 11 C -0.130 4.130 12 H 0.178 0.822 13 C 0.255 3.745 14 O -0.462 6.462 15 O -0.158 6.158 16 C -0.571 4.571 17 H 0.093 0.907 18 C -0.229 4.229 19 N -0.529 5.529 20 Si 0.966 3.034 21 H -0.193 1.193 22 H -0.181 1.181 23 H -0.190 1.190 24 C 0.300 3.700 25 O -0.409 6.409 26 C -0.208 4.208 27 C -0.112 4.112 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.180 0.820 36 H 0.178 0.822 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.101 0.899 40 H 0.160 0.840 41 H 0.074 0.926 42 H 0.131 0.869 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.701 -7.154 -22.717 23.877 hybrid contribution -0.211 -0.781 -0.522 0.963 sum -1.912 -7.935 -23.239 24.631 Atomic orbital electron populations 1.21865 0.94117 1.02056 1.02117 1.20128 0.96096 0.95822 0.94675 1.21881 1.01009 0.95350 1.02120 1.20156 0.98971 0.96808 0.94472 1.21259 0.95899 0.94113 0.99170 1.21087 1.03378 1.03003 0.89001 1.18043 0.96921 0.93788 0.86421 1.45856 1.53330 1.24786 1.03850 1.22742 0.96907 0.83965 0.98605 1.22750 0.97780 1.02082 0.91544 1.21828 1.00972 0.97039 0.93124 0.82214 1.23304 0.87073 0.80690 0.83417 1.90520 1.17004 1.66727 1.71910 1.83717 1.42185 1.48010 1.41862 1.22408 0.93792 1.25903 1.14951 0.90662 1.28577 0.98652 0.95233 1.00430 1.70589 1.05992 1.41009 1.35292 0.82529 0.72721 0.75374 0.72797 1.19259 1.18093 1.18972 1.20841 0.79424 0.85349 0.84413 1.90699 1.42456 1.26183 1.81601 1.21554 1.01101 0.97492 1.00683 1.20919 0.99366 0.99338 0.91618 0.93647 0.90882 0.92531 0.88356 0.90766 0.93734 0.92956 0.81977 0.82151 0.85798 0.86122 0.89904 0.83979 0.92646 0.86855 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.01 71.98 0.65 -1.36 16 2 C -0.05 -0.71 3.09 -11.54 -0.04 -0.75 16 3 C -0.15 -2.21 9.00 71.98 0.65 -1.56 16 4 C -0.10 -2.09 4.78 -19.84 -0.09 -2.18 16 5 C -0.09 -1.47 9.66 22.25 0.21 -1.26 16 6 C -0.14 -2.83 9.42 22.39 0.21 -2.62 16 7 C 0.14 4.09 6.60 38.15 0.25 4.35 16 8 N -0.55 -16.44 3.14 -627.71 -1.97 -18.41 16 9 C 0.10 1.72 6.51 86.83 0.56 2.29 16 10 C -0.10 -2.47 6.45 31.65 0.20 -2.26 16 11 C -0.11 -3.93 3.44 -11.55 -0.04 -3.97 16 12 H 0.16 4.94 8.14 -2.38 -0.02 4.92 16 13 C 0.41 21.31 7.21 71.24 0.51 21.83 16 14 O -0.56 -31.00 14.76 20.78 0.31 -30.70 16 15 O -0.25 -15.67 8.72 16.93 0.15 -15.52 16 16 C -0.50 -32.00 9.65 67.94 0.66 -31.34 16 17 H 0.08 4.91 6.86 -2.91 -0.02 4.89 16 18 C -0.03 -1.82 5.49 84.87 0.47 -1.36 16 19 N -0.90 -58.23 13.69 21.62 0.30 -57.93 16 20 Si 1.15 51.65 29.92 68.60 2.05 53.71 16 21 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 C 0.51 20.64 7.34 87.90 0.65 21.28 16 25 O -0.53 -27.39 14.29 -1.41 -0.02 -27.41 16 26 C -0.19 -6.38 9.29 22.39 0.21 -6.17 16 27 C -0.09 -2.54 8.70 22.25 0.19 -2.34 16 28 H 0.04 0.74 7.38 -2.39 -0.02 0.72 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 1.02 7.87 -2.39 -0.02 1.01 16 32 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.04 0.79 7.38 -2.39 -0.02 0.77 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.16 1.55 7.94 -2.91 -0.02 1.53 16 36 H 0.16 1.94 6.75 -2.91 -0.02 1.92 16 37 H 0.12 1.28 8.14 -2.39 -0.02 1.27 16 38 H 0.12 1.43 7.24 -2.39 -0.02 1.41 16 39 H 0.08 2.37 7.06 -2.39 -0.02 2.35 16 40 H 0.14 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.26 18.07 7.97 -92.70 -0.74 17.33 16 42 H 0.11 4.83 5.26 -2.91 -0.02 4.81 16 43 H 0.12 3.15 7.09 -2.91 -0.02 3.13 16 Total: -1.00 -90.35 357.25 7.13 -83.23 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 1.06 Total: 20.47 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 5.25 Total: -7.44 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -1.67 Total: -76.34 kcal Atomic # 8 Polarization: -74.06 SS G_CDS: 0.43 Total: -73.62 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.05 Total: 53.71 kcal Total: -90.35 7.13 -83.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745118606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.677 kcal (2) G-P(sol) polarization free energy of solvation -90.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds