Wall clock time and date at job start Tue Mar 31 2020 12:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47581 * 2 1 4 4 C 1.34919 * 119.99739 * 85.42701 * 3 2 1 5 5 C 1.46229 * 120.00092 * 353.35550 * 4 3 2 6 6 O 1.21621 * 120.00375 * 353.46709 * 5 4 3 7 7 O 1.34915 * 120.00015 * 173.47495 * 5 4 3 8 8 C 1.42895 * 117.00025 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.47260 * 179.97438 * 8 7 5 10 10 O 1.21297 * 119.99362 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00225 * 179.97438 * 9 8 7 12 12 C 1.37097 * 119.99988 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00106 * 0.02562 * 12 11 9 14 14 C 1.38954 * 120.00192 * 179.97438 * 12 11 9 15 15 N 1.31407 * 120.00345 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99724 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47046 * 89.99636 * 16 14 12 18 18 H 1.48496 * 109.47280 * 209.99167 * 16 14 12 19 19 H 1.48493 * 109.47261 * 329.99679 * 16 14 12 20 20 C 1.47166 * 120.00090 * 265.42426 * 3 2 1 21 21 C 1.39860 * 120.17129 * 64.72860 * 20 3 2 22 22 C 1.37882 * 119.82620 * 179.74400 * 21 20 3 23 23 C 1.38407 * 120.17162 * 0.52462 * 22 21 20 24 24 C 1.50702 * 119.82892 * 179.74077 * 23 22 21 25 25 C 1.38407 * 120.34974 * 359.72680 * 23 22 21 26 26 C 1.37892 * 120.16922 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.47059 * 59.99517 * 1 2 3 28 28 H 1.08993 * 109.47468 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47221 * 300.00572 * 1 2 3 30 30 H 1.09010 * 109.46872 * 120.00188 * 2 1 3 31 31 H 1.09002 * 109.47221 * 239.99427 * 2 1 3 32 32 H 1.08004 * 119.99693 * 173.36242 * 4 3 2 33 33 H 1.09000 * 109.46958 * 299.98958 * 8 7 5 34 34 H 1.08999 * 109.47879 * 59.99346 * 8 7 5 35 35 H 0.97004 * 120.00181 * 0.02562 * 11 9 8 36 36 H 0.96999 * 120.00519 * 180.02562 * 15 14 12 37 37 H 1.07997 * 120.08403 * 359.97383 * 21 20 3 38 38 H 1.08000 * 119.91811 * 180.24915 * 22 21 20 39 39 H 1.08995 * 109.47363 * 269.98766 * 24 23 22 40 40 H 1.09007 * 109.46744 * 29.98508 * 24 23 22 41 41 H 1.08998 * 109.47245 * 149.97836 * 24 23 22 42 42 H 1.07998 * 119.91821 * 179.97438 * 25 23 22 43 43 H 1.08002 * 120.08198 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1695 2.0877 1.1647 5 6 1.6956 1.4876 2.4111 6 8 1.0726 0.4434 2.3850 7 8 1.9493 2.0923 3.5902 8 6 1.4571 1.4499 4.7679 9 6 1.8338 2.2640 5.9789 10 8 2.4624 3.2928 5.8464 11 7 1.4722 1.8488 7.2091 12 6 1.8154 2.5891 8.3108 13 1 2.3752 3.5052 8.1928 14 6 1.4422 2.1614 9.5791 15 7 1.7707 2.8712 10.6350 16 14 0.4735 0.5773 9.7830 17 1 1.4138 -0.5603 9.9471 18 1 -0.3946 0.6790 10.9835 19 1 -0.3687 0.3538 8.5806 20 6 2.3736 2.0806 -1.2704 21 6 1.3794 2.3308 -2.2217 22 6 1.7060 2.9542 -3.4074 23 6 3.0158 3.3224 -3.6619 24 6 3.3652 3.9981 -4.9629 25 6 4.0063 3.0735 -2.7278 26 6 3.6946 2.4555 -1.5352 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 2.6291 3.0650 1.1765 33 1 0.3719 1.3661 4.7094 34 1 1.8945 0.4549 4.8490 35 1 0.9698 1.0258 7.3151 36 1 1.5105 2.5725 11.5204 37 1 0.3578 2.0398 -2.0265 38 1 0.9388 3.1518 -4.1413 39 1 3.6240 3.2439 -5.7060 40 1 2.5096 4.5753 -5.3137 41 1 4.2145 4.6639 -4.8098 42 1 5.0260 3.3633 -2.9338 43 1 4.4688 2.2616 -0.8075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745126636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:52 Heat of formation + Delta-G solvation = -82.791306 kcal Electronic energy + Delta-G solvation = -24971.540779 eV Core-core repulsion = 21175.197864 eV Total energy + Delta-G solvation = -3796.342915 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.61289 -39.71021 -38.39268 -36.92275 -35.45094 -34.03294 -32.53650 -31.78119 -31.44082 -30.73941 -28.71096 -27.30147 -24.86744 -24.08166 -22.96455 -22.43862 -21.33731 -19.65839 -19.21130 -18.55138 -17.65249 -16.50485 -16.42124 -16.10663 -15.66272 -15.57261 -15.33788 -14.90523 -14.58883 -14.20362 -14.08666 -13.82959 -13.76038 -13.35285 -13.15698 -13.00006 -12.71050 -12.59124 -12.48563 -12.21513 -12.18860 -12.07142 -11.88343 -11.44346 -11.26572 -11.23216 -10.99168 -10.63404 -10.33003 -10.07765 -10.01165 -9.65605 -9.61331 -9.29721 -8.74734 -8.62617 -8.26979 -6.37192 -3.89898 0.57852 1.07474 1.15935 2.76797 2.89415 3.00394 3.04876 3.13395 3.37048 3.59080 4.05526 4.23197 4.47490 4.50820 4.54077 4.65632 4.70987 4.94771 5.04190 5.10644 5.13271 5.13638 5.19753 5.26865 5.34824 5.39155 5.41293 5.47179 5.59130 5.68207 5.70153 5.71173 5.76612 5.91112 5.97828 6.00344 6.16977 6.21172 6.24068 6.29973 6.61291 6.66535 7.47361 7.89362 8.03826 8.50624 8.86146 9.32382 9.68854 10.75171 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027575 B = 0.002194 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.175566 B =12757.244232 C =13508.042169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C 0.018 3.982 4 C -0.182 4.182 5 C 0.490 3.510 6 O -0.507 6.507 7 O -0.317 6.317 8 C 0.058 3.942 9 C 0.448 3.552 10 O -0.557 6.557 11 N -0.580 5.580 12 C -0.308 4.308 13 H 0.122 0.878 14 C 0.044 3.956 15 N -0.876 5.876 16 Si 0.879 3.121 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.268 1.268 20 C -0.068 4.068 21 C -0.094 4.094 22 C -0.120 4.120 23 C -0.083 4.083 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.096 4.096 27 H 0.045 0.955 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.099 0.901 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.373 0.627 36 H 0.275 0.725 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.125 0.875 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.632 -5.006 -29.713 30.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.132 4.132 3 C 0.018 3.982 4 C -0.200 4.200 5 C 0.337 3.663 6 O -0.399 6.399 7 O -0.231 6.231 8 C -0.021 4.021 9 C 0.233 3.767 10 O -0.439 6.439 11 N -0.220 5.220 12 C -0.436 4.436 13 H 0.140 0.860 14 C -0.159 4.159 15 N -0.515 5.515 16 Si 0.705 3.295 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.194 1.194 20 C -0.068 4.068 21 C -0.112 4.112 22 C -0.138 4.138 23 C -0.083 4.083 24 C -0.173 4.173 25 C -0.137 4.137 26 C -0.114 4.114 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.117 0.883 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.206 0.794 36 H 0.086 0.914 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.143 0.857 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.387 -4.558 -29.519 29.872 hybrid contribution -0.820 -1.294 0.546 1.627 sum -1.207 -5.852 -28.973 29.583 Atomic orbital electron populations 1.21654 0.93738 1.02112 1.01858 1.20916 0.97405 0.91381 1.03484 1.21173 0.90824 0.95303 0.90950 1.22039 1.06652 1.02696 0.88661 1.21289 0.77608 0.82548 0.84847 1.90820 1.38269 1.22895 1.87874 1.86254 1.71434 1.51373 1.14052 1.22340 1.00014 0.96556 0.83147 1.19233 0.86129 0.88021 0.83286 1.90605 1.42665 1.25351 1.85248 1.42035 1.50766 1.23620 1.05623 1.19429 1.34175 1.07554 0.82431 0.86032 1.25037 0.97685 0.98158 0.95055 1.69611 1.45241 1.38157 0.98495 0.86675 0.80503 0.83538 0.78765 1.19427 1.19975 1.19359 1.18820 0.94043 1.00278 0.93659 1.21248 0.98927 0.98131 0.92856 1.20959 0.95980 0.99679 0.97217 1.20076 0.93487 0.98257 0.96437 1.20827 1.02326 1.00026 0.94125 1.20985 0.99233 0.99790 0.93721 1.21366 0.95281 0.97477 0.97293 0.93612 0.92353 0.91113 0.88318 0.91622 0.83931 0.89737 0.89731 0.79402 0.91420 0.85522 0.85748 0.91067 0.91440 0.91388 0.85675 0.85375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.34 37.16 0.35 -1.04 16 2 C -0.10 -0.99 5.32 -27.89 -0.15 -1.14 16 3 C 0.02 0.20 4.74 -102.18 -0.48 -0.29 16 4 C -0.18 -2.26 9.76 -37.55 -0.37 -2.63 16 5 C 0.49 7.51 7.72 33.94 0.26 7.78 16 6 O -0.51 -7.88 10.92 -19.36 -0.21 -8.09 16 7 O -0.32 -5.84 9.65 -47.84 -0.46 -6.30 16 8 C 0.06 1.05 5.85 36.01 0.21 1.27 16 9 C 0.45 10.58 7.86 -10.99 -0.09 10.49 16 10 O -0.56 -15.60 16.08 -14.37 -0.23 -15.83 16 11 N -0.58 -13.97 5.09 -10.96 -0.06 -14.02 16 12 C -0.31 -8.70 10.16 -14.93 -0.15 -8.85 16 13 H 0.12 3.91 7.39 -52.49 -0.39 3.53 16 14 C 0.04 1.21 5.50 -17.47 -0.10 1.11 16 15 N -0.88 -25.34 13.96 55.50 0.77 -24.57 16 16 Si 0.88 19.20 27.74 -169.99 -4.71 14.49 16 17 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 19 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 20 C -0.07 -0.65 5.29 -105.06 -0.56 -1.21 16 21 C -0.09 -0.81 9.78 -39.10 -0.38 -1.19 16 22 C -0.12 -0.92 9.68 -39.65 -0.38 -1.30 16 23 C -0.08 -0.61 5.89 -104.50 -0.62 -1.23 16 24 C -0.12 -0.59 10.00 36.01 0.36 -0.23 16 25 C -0.12 -0.93 9.68 -39.65 -0.38 -1.32 16 26 C -0.10 -0.85 9.73 -39.11 -0.38 -1.23 16 27 H 0.04 0.39 6.77 -51.93 -0.35 0.04 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.86 6.24 -51.93 -0.32 0.54 16 30 H 0.10 1.19 6.07 -51.92 -0.32 0.88 16 31 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 32 H 0.14 1.66 8.06 -52.48 -0.42 1.24 16 33 H 0.08 1.37 8.13 -51.93 -0.42 0.95 16 34 H 0.08 1.36 8.13 -51.93 -0.42 0.94 16 35 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 36 H 0.28 7.32 8.31 -40.82 -0.34 6.99 16 37 H 0.13 0.96 6.68 -52.49 -0.35 0.61 16 38 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 40 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 41 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -33.32 366.70 -8.00 -41.32 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: -5.77 Total: 8.47 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.85 Total: -1.00 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: 0.72 Total: -38.59 kcal Atomic # 8 Polarization: -29.32 SS G_CDS: -0.90 Total: -30.22 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.32 -8.00 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745126636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.471 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds