Wall clock time and date at job start Tue Mar 31 2020 12:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 109.47581 * 2 1 4 4 C 1.34919 * 119.99739 * 85.42701 * 3 2 1 5 5 C 1.46229 * 120.00092 * 353.35550 * 4 3 2 6 6 O 1.21621 * 120.00375 * 353.46709 * 5 4 3 7 7 O 1.34915 * 120.00015 * 173.47495 * 5 4 3 8 8 C 1.42895 * 117.00025 * 180.02562 * 7 5 4 9 9 C 1.50705 * 109.47260 * 179.97438 * 8 7 5 10 10 O 1.21297 * 119.99362 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00225 * 179.97438 * 9 8 7 12 12 C 1.37097 * 119.99988 * 179.97438 * 11 9 8 13 13 H 1.08002 * 120.00106 * 0.02562 * 12 11 9 14 14 C 1.38954 * 120.00192 * 179.97438 * 12 11 9 15 15 N 1.31407 * 120.00345 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99724 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47046 * 89.99636 * 16 14 12 18 18 H 1.48496 * 109.47280 * 209.99167 * 16 14 12 19 19 H 1.48493 * 109.47261 * 329.99679 * 16 14 12 20 20 C 1.47166 * 120.00090 * 265.42426 * 3 2 1 21 21 C 1.39860 * 120.17129 * 64.72860 * 20 3 2 22 22 C 1.37882 * 119.82620 * 179.74400 * 21 20 3 23 23 C 1.38407 * 120.17162 * 0.52462 * 22 21 20 24 24 C 1.50702 * 119.82892 * 179.74077 * 23 22 21 25 25 C 1.38407 * 120.34974 * 359.72680 * 23 22 21 26 26 C 1.37892 * 120.16922 * 0.02562 * 25 23 22 27 27 H 1.09002 * 109.47059 * 59.99517 * 1 2 3 28 28 H 1.08993 * 109.47468 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47221 * 300.00572 * 1 2 3 30 30 H 1.09010 * 109.46872 * 120.00188 * 2 1 3 31 31 H 1.09002 * 109.47221 * 239.99427 * 2 1 3 32 32 H 1.08004 * 119.99693 * 173.36242 * 4 3 2 33 33 H 1.09000 * 109.46958 * 299.98958 * 8 7 5 34 34 H 1.08999 * 109.47879 * 59.99346 * 8 7 5 35 35 H 0.97004 * 120.00181 * 0.02562 * 11 9 8 36 36 H 0.96999 * 120.00519 * 180.02562 * 15 14 12 37 37 H 1.07997 * 120.08403 * 359.97383 * 21 20 3 38 38 H 1.08000 * 119.91811 * 180.24915 * 22 21 20 39 39 H 1.08995 * 109.47363 * 269.98766 * 24 23 22 40 40 H 1.09007 * 109.46744 * 29.98508 * 24 23 22 41 41 H 1.08998 * 109.47245 * 149.97836 * 24 23 22 42 42 H 1.07998 * 119.91821 * 179.97438 * 25 23 22 43 43 H 1.08002 * 120.08198 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1695 2.0877 1.1647 5 6 1.6956 1.4876 2.4111 6 8 1.0726 0.4434 2.3850 7 8 1.9493 2.0923 3.5902 8 6 1.4571 1.4499 4.7679 9 6 1.8338 2.2640 5.9789 10 8 2.4624 3.2928 5.8464 11 7 1.4722 1.8488 7.2091 12 6 1.8154 2.5891 8.3108 13 1 2.3752 3.5052 8.1928 14 6 1.4422 2.1614 9.5791 15 7 1.7707 2.8712 10.6350 16 14 0.4735 0.5773 9.7830 17 1 1.4138 -0.5603 9.9471 18 1 -0.3946 0.6790 10.9835 19 1 -0.3687 0.3538 8.5806 20 6 2.3736 2.0806 -1.2704 21 6 1.3794 2.3308 -2.2217 22 6 1.7060 2.9542 -3.4074 23 6 3.0158 3.3224 -3.6619 24 6 3.3652 3.9981 -4.9629 25 6 4.0063 3.0735 -2.7278 26 6 3.6946 2.4555 -1.5352 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 2.6291 3.0650 1.1765 33 1 0.3719 1.3661 4.7094 34 1 1.8945 0.4549 4.8490 35 1 0.9698 1.0258 7.3151 36 1 1.5105 2.5725 11.5204 37 1 0.3578 2.0398 -2.0265 38 1 0.9388 3.1518 -4.1413 39 1 3.6240 3.2439 -5.7060 40 1 2.5096 4.5753 -5.3137 41 1 4.2145 4.6639 -4.8098 42 1 5.0260 3.3633 -2.9338 43 1 4.4688 2.2616 -0.8075 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745126636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:51 Heat of formation + Delta-G solvation = -101.770153 kcal Electronic energy + Delta-G solvation = -24972.363764 eV Core-core repulsion = 21175.197864 eV Total energy + Delta-G solvation = -3797.165900 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.82608 -40.52451 -40.10142 -38.13753 -36.44685 -36.08299 -33.88093 -33.16966 -32.12527 -31.59503 -30.15236 -28.08696 -26.50920 -25.19574 -23.59563 -23.30947 -22.21637 -21.56738 -20.57662 -20.11359 -18.84138 -17.87572 -17.75613 -17.27071 -16.97462 -16.61259 -16.24978 -16.06923 -15.77934 -15.50263 -15.32968 -14.80335 -14.57068 -14.39323 -14.33685 -14.19341 -14.01354 -13.94627 -13.67077 -13.31908 -13.02634 -13.01710 -12.82461 -12.53187 -12.47223 -12.13786 -12.03575 -12.00784 -11.88471 -11.61578 -11.52974 -11.12538 -10.61167 -10.48357 -10.35410 -9.90442 -9.40036 -8.47157 -6.10475 -0.27078 0.39221 0.46994 1.29073 1.32721 1.41689 1.51245 1.73172 1.81147 2.19414 2.73248 2.85473 3.07075 3.49873 3.71697 3.84852 3.94007 4.01909 4.05417 4.07841 4.14739 4.15330 4.27067 4.42162 4.49011 4.52628 4.63033 4.80844 4.84767 4.88059 4.92153 5.09514 5.10387 5.14612 5.19125 5.27041 5.35484 5.44052 5.50251 5.52622 5.59098 5.67779 5.83961 6.03662 6.45889 6.69174 6.77305 7.24373 7.76706 8.69514 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027575 B = 0.002194 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.175566 B =12757.244232 C =13508.042169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C 0.049 3.951 4 C -0.207 4.207 5 C 0.491 3.509 6 O -0.510 6.510 7 O -0.344 6.344 8 C 0.069 3.931 9 C 0.447 3.553 10 O -0.611 6.611 11 N -0.575 5.575 12 C -0.335 4.335 13 H 0.059 0.941 14 C -0.008 4.008 15 N -0.925 5.925 16 Si 0.963 3.037 17 H -0.254 1.254 18 H -0.271 1.271 19 H -0.232 1.232 20 C -0.090 4.090 21 C -0.099 4.099 22 C -0.126 4.126 23 C -0.084 4.084 24 C -0.116 4.116 25 C -0.127 4.127 26 C -0.106 4.106 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.144 0.856 33 H 0.112 0.888 34 H 0.114 0.886 35 H 0.393 0.607 36 H 0.283 0.717 37 H 0.136 0.864 38 H 0.146 0.854 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.142 0.858 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.147 -7.437 -32.409 33.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 C 0.049 3.951 4 C -0.226 4.226 5 C 0.339 3.661 6 O -0.402 6.402 7 O -0.260 6.260 8 C -0.008 4.008 9 C 0.234 3.766 10 O -0.496 6.496 11 N -0.217 5.217 12 C -0.464 4.464 13 H 0.078 0.922 14 C -0.208 4.208 15 N -0.564 5.564 16 Si 0.782 3.218 17 H -0.178 1.178 18 H -0.196 1.196 19 H -0.155 1.155 20 C -0.090 4.090 21 C -0.117 4.117 22 C -0.143 4.143 23 C -0.084 4.084 24 C -0.173 4.173 25 C -0.145 4.145 26 C -0.124 4.124 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.162 0.838 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.229 0.771 36 H 0.092 0.908 37 H 0.153 0.847 38 H 0.163 0.837 39 H 0.100 0.900 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.159 0.841 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.910 -7.006 -32.242 33.050 hybrid contribution -0.264 -0.438 1.233 1.334 sum -2.174 -7.443 -31.010 31.965 Atomic orbital electron populations 1.21617 0.93199 1.02638 1.01608 1.20954 0.97785 0.91053 1.03565 1.21337 0.87835 0.95073 0.90890 1.21970 1.09239 1.03361 0.88066 1.21645 0.77510 0.82502 0.84417 1.90815 1.38651 1.23043 1.87721 1.86247 1.72279 1.52539 1.14910 1.22173 1.01707 0.96011 0.80933 1.20256 0.84226 0.87527 0.84582 1.90578 1.44721 1.27963 1.86299 1.41806 1.51086 1.23960 1.04828 1.19009 1.35574 1.06945 0.84826 0.92238 1.26110 0.98263 1.02790 0.93648 1.69779 1.46409 1.40808 0.99449 0.85400 0.79024 0.77229 0.80157 1.17848 1.19556 1.15524 1.18843 0.94834 1.01808 0.93492 1.21406 0.99088 0.98197 0.92967 1.21254 0.96712 0.99120 0.97247 1.20441 0.93373 0.97444 0.97181 1.20883 1.03003 1.00324 0.93042 1.21243 1.00353 0.99516 0.93417 1.21495 0.95170 0.97756 0.97987 0.91895 0.91471 0.93269 0.89875 0.89832 0.83793 0.86973 0.86826 0.77058 0.90779 0.84669 0.83651 0.90046 0.90526 0.90776 0.84063 0.85191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 9.34 71.98 0.67 -1.79 16 2 C -0.10 -1.87 5.32 29.85 0.16 -1.71 16 3 C 0.05 1.02 4.74 -18.28 -0.09 0.93 16 4 C -0.21 -5.16 9.76 23.58 0.23 -4.93 16 5 C 0.49 14.87 7.72 69.90 0.54 15.41 16 6 O -0.51 -15.27 10.92 19.44 0.21 -15.06 16 7 O -0.34 -12.69 9.65 -51.83 -0.50 -13.19 16 8 C 0.07 2.45 5.85 71.24 0.42 2.87 16 9 C 0.45 21.41 7.86 87.66 0.69 22.10 16 10 O -0.61 -35.92 16.08 15.95 0.26 -35.67 16 11 N -0.57 -27.71 5.09 -306.98 -1.56 -29.27 16 12 C -0.33 -19.72 10.16 84.04 0.85 -18.87 16 13 H 0.06 4.16 7.39 -2.91 -0.02 4.14 16 14 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 15 N -0.92 -55.19 13.96 21.66 0.30 -54.88 16 16 Si 0.96 38.38 27.74 68.60 1.90 40.28 16 17 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 18 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 19 H -0.23 -7.84 6.52 99.48 0.65 -7.20 16 20 C -0.09 -1.61 5.29 -20.15 -0.11 -1.72 16 21 C -0.10 -1.51 9.78 22.58 0.22 -1.29 16 22 C -0.13 -1.61 9.68 22.23 0.22 -1.39 16 23 C -0.08 -1.06 5.89 -19.78 -0.12 -1.18 16 24 C -0.12 -0.86 10.00 71.24 0.71 -0.14 16 25 C -0.13 -1.78 9.68 22.23 0.22 -1.57 16 26 C -0.11 -1.78 9.73 22.58 0.22 -1.56 16 27 H 0.06 0.93 6.77 -2.39 -0.02 0.91 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 1.14 6.24 -2.39 -0.01 1.12 16 30 H 0.08 1.92 6.07 -2.38 -0.01 1.90 16 31 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 32 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 33 H 0.11 3.36 8.13 -2.39 -0.02 3.34 16 34 H 0.11 3.37 8.13 -2.39 -0.02 3.35 16 35 H 0.39 15.54 5.76 -92.71 -0.53 15.00 16 36 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 37 H 0.14 1.75 6.68 -2.91 -0.02 1.73 16 38 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 39 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 0.44 8.08 -2.38 -0.02 0.42 16 41 H 0.07 0.47 8.08 -2.39 -0.02 0.45 16 42 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 43 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -77.23 366.70 6.35 -70.88 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.44 Total: 31.75 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 5.30 Total: 5.17 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -1.26 Total: -84.15 kcal Atomic # 8 Polarization: -63.88 SS G_CDS: -0.03 Total: -63.92 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.90 Total: 40.28 kcal Total: -77.23 6.35 -70.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745126636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.891 kcal (2) G-P(sol) polarization free energy of solvation -77.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds