Wall clock time and date at job start Tue Mar 31 2020 12:14:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.46972 * 2 1 4 4 C 1.34918 * 119.99976 * 95.00577 * 3 2 1 5 5 C 1.46228 * 119.99659 * 179.97438 * 4 3 2 6 6 O 1.21616 * 120.00696 * 359.97438 * 5 4 3 7 7 O 1.34911 * 119.99664 * 179.97438 * 5 4 3 8 8 C 1.42898 * 117.00247 * 180.02562 * 7 5 4 9 9 C 1.50694 * 109.47333 * 180.02562 * 8 7 5 10 10 O 1.21295 * 120.00271 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00212 * 180.02562 * 9 8 7 12 12 C 1.37099 * 120.00474 * 179.97438 * 11 9 8 13 13 H 1.07998 * 119.99613 * 0.02562 * 12 11 9 14 14 C 1.38949 * 120.00383 * 179.97438 * 12 11 9 15 15 N 1.31419 * 119.99801 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00198 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47606 * 89.99946 * 16 14 12 18 18 H 1.48502 * 109.47396 * 210.00067 * 16 14 12 19 19 H 1.48502 * 109.47187 * 329.99807 * 16 14 12 20 20 C 1.47177 * 119.99962 * 274.99913 * 3 2 1 21 21 C 1.39858 * 120.16919 * 245.00312 * 20 3 2 22 22 C 1.37887 * 119.82069 * 179.97438 * 21 20 3 23 23 C 1.38408 * 120.17153 * 0.27810 * 22 21 20 24 24 C 1.50701 * 119.82086 * 179.69923 * 23 22 21 25 25 C 1.38407 * 120.34838 * 359.44594 * 23 22 21 26 26 C 1.37879 * 120.17339 * 0.55211 * 25 23 22 27 27 H 1.09001 * 109.47580 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47361 * 299.99920 * 1 2 3 29 29 H 1.08999 * 109.47148 * 59.99745 * 1 2 3 30 30 H 1.08998 * 109.46942 * 239.99849 * 2 1 3 31 31 H 1.08999 * 109.47148 * 120.00255 * 2 1 3 32 32 H 1.07997 * 119.99502 * 359.97438 * 4 3 2 33 33 H 1.09008 * 109.46715 * 300.00090 * 8 7 5 34 34 H 1.09000 * 109.47309 * 59.99787 * 8 7 5 35 35 H 0.97004 * 119.99847 * 359.97438 * 11 9 8 36 36 H 0.96995 * 120.00180 * 180.02562 * 15 14 12 37 37 H 1.07995 * 120.08647 * 359.95580 * 21 20 3 38 38 H 1.08002 * 119.90932 * 179.97438 * 22 21 20 39 39 H 1.08993 * 109.47204 * 89.99881 * 24 23 22 40 40 H 1.09001 * 109.46644 * 209.99962 * 24 23 22 41 41 H 1.09000 * 109.47409 * 329.99766 * 24 23 22 42 42 H 1.08003 * 119.91096 * 180.28307 * 25 23 22 43 43 H 1.08000 * 120.09004 * 179.75014 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3533 2.0229 1.1640 5 6 2.8412 3.4013 1.1638 6 8 2.9581 4.0050 0.1146 7 8 3.1616 4.0035 2.3278 8 6 3.6312 5.3511 2.2534 9 6 3.9377 5.8536 3.6406 10 8 3.7701 5.1292 4.5989 11 7 4.3971 7.1084 3.8166 12 6 4.6755 7.5658 5.0787 13 1 4.5271 6.9205 5.9318 14 6 5.1497 8.8592 5.2601 15 7 5.3317 9.6440 4.2218 16 14 5.5297 9.4822 6.9796 17 1 6.9453 9.1824 7.3132 18 1 5.3082 10.9496 7.0347 19 1 4.6375 8.8099 7.9580 20 6 2.1729 2.1516 -1.2697 21 6 3.4377 2.5466 -1.7171 22 6 3.5612 3.2304 -2.9081 23 6 2.4369 3.5312 -3.6572 24 6 2.5803 4.2850 -4.9543 25 6 1.1823 3.1389 -3.2240 26 6 1.0423 2.4544 -2.0354 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.2498 1.4866 2.0957 33 1 4.5356 5.3877 1.6459 34 1 2.8637 5.9788 1.8005 35 1 4.5308 7.6879 3.0503 36 1 5.6631 10.5468 4.3483 37 1 4.3153 2.3167 -1.1312 38 1 4.5372 3.5364 -3.2547 39 1 2.7140 3.5776 -5.7727 40 1 1.6835 4.8790 -5.1303 41 1 3.4471 4.9435 -4.8980 42 1 0.3103 3.3734 -3.8165 43 1 0.0623 2.1524 -1.6966 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745126637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:56 Heat of formation + Delta-G solvation = -87.994819 kcal Electronic energy + Delta-G solvation = -25492.561204 eV Core-core repulsion = 21695.992648 eV Total energy + Delta-G solvation = -3796.568556 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.49967 -39.32795 -38.06864 -36.61549 -35.64797 -33.96345 -32.39411 -31.36759 -31.16801 -30.66973 -28.46100 -26.94352 -25.04600 -24.27673 -22.65319 -21.99391 -21.33659 -19.55796 -19.00969 -18.03676 -17.75697 -16.59969 -16.26551 -15.72894 -15.49764 -15.30602 -14.84945 -14.64802 -14.44502 -14.15259 -13.91593 -13.89555 -13.77783 -13.46694 -13.13206 -12.94121 -12.58782 -12.35164 -12.26226 -12.06818 -11.89201 -11.85192 -11.59839 -11.50238 -11.11558 -11.07378 -10.89373 -10.42374 -10.32072 -10.25402 -10.24491 -9.57949 -9.51032 -8.84082 -8.47818 -8.24527 -8.05266 -6.47377 -3.89266 0.73060 1.42366 1.52098 2.90392 3.05909 3.15133 3.24791 3.31445 3.72694 3.77947 4.14187 4.34534 4.55029 4.74182 4.82939 4.86904 4.91837 4.95159 4.99304 5.18088 5.25165 5.27295 5.32680 5.39992 5.44322 5.50572 5.57574 5.58441 5.68033 5.68185 5.76276 5.86929 5.92016 6.02798 6.08244 6.08928 6.17463 6.43425 6.50692 6.58898 6.75337 6.99349 7.50182 7.93405 8.06961 8.52240 9.09957 9.42819 9.93181 10.70008 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016839 B = 0.002687 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.401314 B =10418.732932 C =11742.617433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C 0.011 3.989 4 C -0.180 4.180 5 C 0.483 3.517 6 O -0.499 6.499 7 O -0.320 6.320 8 C 0.062 3.938 9 C 0.440 3.560 10 O -0.576 6.576 11 N -0.554 5.554 12 C -0.302 4.302 13 H 0.106 0.894 14 C 0.024 3.976 15 N -0.898 5.898 16 Si 0.934 3.066 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.268 1.268 20 C -0.062 4.062 21 C -0.049 4.049 22 C -0.123 4.123 23 C -0.081 4.081 24 C -0.114 4.114 25 C -0.128 4.128 26 C -0.100 4.100 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.146 0.854 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.395 0.605 36 H 0.273 0.727 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.067 0.933 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.118 0.882 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 -16.112 -17.156 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C 0.010 3.990 4 C -0.198 4.198 5 C 0.329 3.671 6 O -0.389 6.389 7 O -0.234 6.234 8 C -0.017 4.017 9 C 0.225 3.775 10 O -0.460 6.460 11 N -0.191 5.191 12 C -0.431 4.431 13 H 0.123 0.877 14 C -0.178 4.178 15 N -0.539 5.539 16 Si 0.760 3.240 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.062 4.062 21 C -0.067 4.067 22 C -0.141 4.141 23 C -0.081 4.081 24 C -0.171 4.171 25 C -0.146 4.146 26 C -0.118 4.118 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.163 0.837 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.228 0.772 36 H 0.083 0.917 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.136 0.864 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.510 -16.176 -16.796 24.499 hybrid contribution 0.400 1.077 0.393 1.215 sum -7.109 -15.099 -16.404 23.401 Atomic orbital electron populations 1.21815 0.93863 1.02373 1.02750 1.20710 0.96816 0.91299 1.03849 1.21230 0.91037 0.95077 0.91625 1.22159 1.06045 0.92430 0.99200 1.21416 0.75468 0.88308 0.81896 1.90949 1.50045 1.66033 1.31889 1.86234 1.75285 1.28442 1.33477 1.22302 1.00248 0.80488 0.98621 1.19360 0.85449 0.83908 0.88821 1.90556 1.57453 1.56479 1.41556 1.41710 1.56832 1.10683 1.09894 1.19726 1.40917 0.97370 0.85065 0.87652 1.25308 0.97013 0.95861 0.99619 1.69619 1.45443 1.08767 1.30041 0.85801 0.78940 0.77723 0.81505 1.20276 1.20822 1.19285 1.18683 0.94042 0.99751 0.93737 1.20963 0.95944 0.95150 0.94648 1.20822 0.98076 0.99941 0.95261 1.19947 0.93288 0.98144 0.96741 1.20794 1.02686 0.99336 0.94263 1.20799 0.96696 1.00283 0.96857 1.21096 0.97318 0.98960 0.94392 0.91766 0.91986 0.92115 0.90042 0.89886 0.83658 0.89999 0.89989 0.77176 0.91668 0.86758 0.86303 0.91409 0.91679 0.91553 0.86358 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.84 37.16 0.37 -0.63 16 2 C -0.09 -0.67 6.08 -27.88 -0.17 -0.84 16 3 C 0.01 0.12 4.75 -102.17 -0.49 -0.37 16 4 C -0.18 -2.29 9.79 -37.55 -0.37 -2.65 16 5 C 0.48 8.05 7.75 33.94 0.26 8.31 16 6 O -0.50 -8.80 11.96 -19.35 -0.23 -9.03 16 7 O -0.32 -6.29 9.65 -47.83 -0.46 -6.76 16 8 C 0.06 1.24 5.85 36.00 0.21 1.45 16 9 C 0.44 10.97 7.86 -10.99 -0.09 10.88 16 10 O -0.58 -16.47 16.08 -14.36 -0.23 -16.70 16 11 N -0.55 -14.38 5.29 -10.97 -0.06 -14.43 16 12 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 13 H 0.11 3.09 7.16 -52.49 -0.38 2.71 16 14 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 15 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 16 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 17 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 C -0.06 -0.76 3.85 -105.06 -0.40 -1.16 16 21 C -0.05 -0.63 6.96 -39.10 -0.27 -0.90 16 22 C -0.12 -1.48 9.68 -39.65 -0.38 -1.86 16 23 C -0.08 -0.90 5.89 -104.50 -0.62 -1.52 16 24 C -0.11 -0.96 10.00 36.01 0.36 -0.60 16 25 C -0.13 -1.39 9.68 -39.65 -0.38 -1.78 16 26 C -0.10 -1.12 9.51 -39.11 -0.37 -1.50 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.40 6.03 -51.93 -0.31 0.09 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.53 8.03 -51.93 -0.42 0.11 16 32 H 0.15 1.58 8.04 -52.49 -0.42 1.16 16 33 H 0.08 1.50 8.13 -51.92 -0.42 1.08 16 34 H 0.08 1.53 8.13 -51.93 -0.42 1.11 16 35 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 36 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.11 1.44 8.05 -52.49 -0.42 1.02 16 38 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 41 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 42 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 43 H 0.12 1.13 6.22 -52.49 -0.33 0.80 16 LS Contribution 370.40 15.07 5.58 5.58 Total: -1.00 -33.37 370.40 -8.23 -41.61 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -5.95 Total: 8.74 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -2.58 Total: -1.23 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.67 Total: -38.17 kcal Atomic # 8 Polarization: -31.57 SS G_CDS: -0.92 Total: -32.49 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.37 -8.23 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745126637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.388 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds